--- /dev/null
+/**
+* Copyright (C) 2017 EDIT
+* European Distributed Institute of Taxonomy
+* http://www.e-taxonomy.eu
+*
+* The contents of this file are subject to the Mozilla Public License Version 1.1
+* See LICENSE.TXT at the top of this package for the full license terms.
+*/
+package eu.etaxonomy.taxeditor.databaseAdmin.wizard;
+
+import org.eclipse.jface.wizard.WizardPage;
+import org.eclipse.swt.SWT;
+import org.eclipse.swt.layout.GridData;
+import org.eclipse.swt.layout.GridLayout;
+import org.eclipse.swt.widgets.Composite;
+import org.eclipse.swt.widgets.TabFolder;
+import org.eclipse.swt.widgets.TabItem;
+
+/**
+ * @author k.luther
+ * @date 26.04.2017
+ *
+ */
+public abstract class AbstractPreferenceWizard extends WizardPage {
+ /**
+ * @param pageName
+ */
+ protected AbstractPreferenceWizard(String pageName) {
+ super(pageName);
+
+ }
+ protected TabFolder tabFolder;
+ protected Composite composite;
+ /***
+ * Adds a tab to the page.
+ * @param text the tab label
+ */
+ public Composite addTab(String text) {
+ if (tabFolder == null){
+ // initialize tab folder
+ if (composite == null) {
+ composite = new Composite(getShell(), SWT.NONE);
+ }
+ tabFolder = new TabFolder(composite, SWT.NONE);
+ tabFolder.setLayoutData(new GridData(GridData.FILL_BOTH));
+ }
+
+ TabItem item = new TabItem(tabFolder, SWT.NONE);
+ item.setText(text);
+
+ Composite currentTab = new Composite(tabFolder, SWT.NULL);
+ GridLayout layout = new GridLayout();
+ currentTab.setLayout(layout);
+ currentTab.setFont(composite.getFont());
+ // currentTab.setLayoutData(new GridData(GridData.FILL_HORIZONTAL));
+
+ item.setControl(currentTab);
+ return currentTab;
+
+ }
+
+}
import org.eclipse.jface.preference.IPreferenceStore;
import org.eclipse.jface.wizard.IWizard;
import org.eclipse.jface.wizard.IWizardPage;
-import org.eclipse.jface.wizard.WizardPage;
import org.eclipse.swt.SWT;
import org.eclipse.swt.events.SelectionAdapter;
import org.eclipse.swt.events.SelectionEvent;
-import org.eclipse.swt.layout.GridData;
import org.eclipse.swt.layout.GridLayout;
import org.eclipse.swt.widgets.Button;
import org.eclipse.swt.widgets.Combo;
import org.eclipse.swt.widgets.Composite;
import org.eclipse.swt.widgets.Label;
-import org.eclipse.swt.widgets.TabFolder;
-import org.eclipse.swt.widgets.TabItem;
import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
import eu.etaxonomy.cdm.model.metadata.CdmPreference;
* @date 01.11.2016
*
*/
-public class DatabasePreferencesPage extends WizardPage implements IWizardPage{
+public class DatabasePreferencesPage extends AbstractPreferenceWizard implements IWizardPage{
CdmPreference preferedNomenclaturalCode;
NameDetailsConfigurator config ;
CdmPreference showCollectingAreaInGeneralSectionPreference;
CdmPreference showTaxonAssociationsPreference;
-
- TabFolder tabFolder;
-
- IPreferenceStore preferenceStore;
- Composite composite;
boolean isSimpleDetailsViewActivated;
Composite child ;
ListComponent biocaseProviderList;
Abcd206ImportConfigurator abcdImportConfigurator;
-
-// private UriWithLabelElement nomenclaturalCodeCombo;
-// private Label nomenclaturalCodeLabel;
-
String[][] labelAndValues;
/*
if (config == null){
config = new NameDetailsConfigurator(false);
}
- setPreferenceStore(PreferencesUtil.getPreferenceStore());
- }
- protected void setPreferenceStore(IPreferenceStore store){
- this.preferenceStore = store;
}
-
-
- /***
- * Adds a tab to the page.
- * @param text the tab label
- */
- public Composite addTab(String text) {
- if (tabFolder == null){
- // initialize tab folder
- if (composite == null) {
- composite = new Composite(getShell(), SWT.NONE);
- }
- tabFolder = new TabFolder(composite, SWT.NONE);
- tabFolder.setLayoutData(new GridData(GridData.FILL_BOTH));
- }
-
- TabItem item = new TabItem(tabFolder, SWT.NONE);
- item.setText(text);
-
- Composite currentTab = new Composite(tabFolder, SWT.NULL);
- GridLayout layout = new GridLayout();
- currentTab.setLayout(layout);
- currentTab.setFont(composite.getFont());
- // currentTab.setLayoutData(new GridData(GridData.FILL_HORIZONTAL));
-
- item.setControl(currentTab);
- return currentTab;
-
- }
-
-
-
-
protected IPreferenceStore doGetPreferenceStore() {
return PreferencesUtil.getPreferenceStore();
}
import eu.etaxonomy.cdm.api.application.ICdmRepository;
import eu.etaxonomy.cdm.api.service.IPreferenceService;
-import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
import eu.etaxonomy.cdm.model.metadata.CdmPreference;
import eu.etaxonomy.cdm.model.metadata.PreferencePredicate;
-import eu.etaxonomy.taxeditor.io.wizard.AbcdImportConfiguratorWizardPage;
import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
import eu.etaxonomy.taxeditor.store.CdmStore;
public DatabasePreferencesPage preferencePage;
- public AbcdImportConfiguratorWizardPage configAbcdImport;
+
public DatabasePreferencesWizard() {
setWindowTitle("Database Preferences Wizard");
preferencePage = new DatabasePreferencesPage("Database Preferences");
- configAbcdImport = AbcdImportConfiguratorWizardPage.createPage(Abcd206ImportConfigurator.NewInstance(null, null));
+
}
@Override
public void addPages() {
addPage(preferencePage);
- addPage(configAbcdImport);
+
}
@Override
public IWizardPage getNextPage(IWizardPage currentPage) {
- if (currentPage.equals(preferencePage)){
- return configAbcdImport;
- }
+
return null;
}
import org.eclipse.jface.wizard.Wizard;
-import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
+import eu.etaxonomy.cdm.api.application.ICdmRepository;
+import eu.etaxonomy.cdm.api.service.IPreferenceService;
+import eu.etaxonomy.cdm.model.metadata.CdmPreference;
+import eu.etaxonomy.cdm.model.metadata.PreferencePredicate;
import eu.etaxonomy.taxeditor.io.wizard.AbcdImportConfiguratorWizardPage;
+import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
+import eu.etaxonomy.taxeditor.store.CdmStore;
/**
* @author k.luther
public ImportPreferencesWizard() {
setWindowTitle("Abcd Import Configuration Wizard");
- configPage = AbcdImportConfiguratorWizardPage.createPreferencePage(Abcd206ImportConfigurator.NewInstance(null, null));
- }
+ configPage = AbcdImportConfiguratorWizardPage.createPreferencePage(PreferencesUtil.getAbcdImportConfigurationPreference(false));
+ }
+ @Override
+ public void addPages() {
+ addPage(configPage);
+ }
/**
* {@inheritDoc}
*/
@Override
public boolean performFinish() {
+ String configString = "";
+ this.configPage.saveConfigToPrefernceStore();
+ configString = this.configPage.createConfigString();
+
+ CdmPreference pref = CdmPreference.NewDatabaseInstance( PreferencePredicate.AbcdImportConfig, configString);
+ pref.setAllowOverride(true);
- return false;
+ ICdmRepository controller = CdmStore.getCurrentApplicationConfiguration();
+ if (controller == null){
+ return false;
+ }
+ IPreferenceService service = controller.getPreferenceService();
+ service.set(pref);
+
+
+ return true;
}
+
+
+
}
import java.io.File;
import java.io.FileOutputStream;
+import java.util.List;
import java.util.Map;
import java.util.Set;
import org.eclipse.core.runtime.jobs.Job;
import org.eclipse.swt.widgets.Display;
import org.eclipse.ui.IWorkbenchPart;
+import org.eclipse.ui.PlatformUI;
import eu.etaxonomy.cdm.api.application.CdmApplicationState;
import eu.etaxonomy.cdm.api.application.ICdmRepository;
import eu.etaxonomy.cdm.io.service.IIOService;
import eu.etaxonomy.taxeditor.model.CdmProgressMonitorAdapter;
import eu.etaxonomy.taxeditor.model.MessagingUtils;
+import eu.etaxonomy.taxeditor.store.CdmStore;
import eu.etaxonomy.taxeditor.store.StoreUtil;
import eu.etaxonomy.taxeditor.store.internal.TaxeditorStorePlugin;
+import eu.etaxonomy.taxeditor.ui.dialog.ReportTextDialog;
/**
* <p>
} catch(Exception e){
logger.error(e.getStackTrace());
}
+ final StringBuilder reportText = new StringBuilder();
+ if(result!=null){
+ List<byte[]> reports = result.getErrors();
+ reportText.append("Errors:\\r");
+ for (byte[] bs : reports) {
+ reportText.append(new String(bs));
+ }
+ List<byte[]> warnings = result.getWarnings();
+ reportText.append("Warnings:\\r");
+ for (byte[] bs : warnings) {
+ reportText.append(new String(bs));
+ }
+ List<Exception> exceptions = result.getExceptions();
+ reportText.append("Exceptions:\\r");
+ for (Exception ex : exceptions) {
+ reportText.append(ex.getStackTrace());
+ }
+ }
+ final Display display = Display.getDefault();
+ display.asyncExec(new Runnable() {
+
+ @Override
+ public void run() {
+ // display reports with possibility to save
+ ReportTextDialog dialog = new ReportTextDialog(PlatformUI.getWorkbench().getActiveWorkbenchWindow().getShell());
+ dialog.setTitle(configurator.getClass().getSimpleName()+" Report");
+ dialog.setReportText(reportText.toString());
+ dialog.open();
+ CdmStore.getContextManager().notifyContextRefresh();
+ }
+ });
+
} catch (Exception e) {
e,
true);
}
+
return Status.OK_STATUS;
}
};
import java.util.ArrayList;
import java.util.List;
-import org.eclipse.jface.wizard.WizardPage;
+import org.eclipse.jface.preference.IPreferenceStore;
import org.eclipse.swt.SWT;
import org.eclipse.swt.events.SelectionAdapter;
import org.eclipse.swt.events.SelectionEvent;
import org.eclipse.swt.widgets.Composite;
import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
-import eu.etaxonomy.taxeditor.databaseAdmin.wizard.ListComponent;
+import eu.etaxonomy.taxeditor.databaseAdmin.wizard.AbstractPreferenceWizard;
+import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
+import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
/**
*
* @author pplitzner
*
*/
-public class AbcdImportConfiguratorWizardPage extends WizardPage {
+public class AbcdImportConfiguratorWizardPage extends AbstractPreferenceWizard {
public static final String PAGE_NAME = "AbcdImportConfiguratorWizardPage";
@Override
public void createControl(Composite parent) {
final Composite composite = new Composite(parent, SWT.NULL);
-
+ //composite = addTab(Messages.DatabasePreferencesPage_Define_Default_NomenclaturalCode);
GridLayout gridLayout = new GridLayout();
composite.setLayout(gridLayout);
- if (isPreferencePage){
- ListComponent list = new ListComponent(composite, composite.getStyle());
- }
+// if (isPreferencePage){
+// ListComponent list = new ListComponent(composite, composite.getStyle());
+// }
Button checkBoxMediaSpecimen = new Button(composite, SWT.CHECK);
checkBoxMediaSpecimen.setSelection(configurator.isAddMediaAsMediaSpecimen());
configurator.setMapUnitIdToCatalogNumber(!configurator.isMapUnitIdToCatalogNumber());
}
});
-
+//TODO: only one of the mappings can be checked!
Button checkBoxMapUnitIdToAccessionNumber = new Button(composite, SWT.CHECK);
checkBoxMapUnitIdToAccessionNumber.setSelection(configurator.isMapUnitIdToAccessionNumber());
checkBoxMapUnitIdToAccessionNumber.setText("Map UnitID to accession number");
checkBoxMoveToDefaultClassification.addSelectionListener(new SelectionAdapter() {
@Override
public void widgetSelected(SelectionEvent e) {
- configurator.setRemoveCountryFromLocalityText(!configurator.isRemoveCountryFromLocalityText());
+ configurator.setMoveNewTaxaToDefaultClassification(!configurator.isMoveNewTaxaToDefaultClassification());
}
});
+ Button checkBoxImportSiblings = new Button(composite, SWT.CHECK);
+ checkBoxImportSiblings.setSelection(configurator.isGetSiblings());
+ checkBoxImportSiblings.setText("Import all children of cultures or tissue samples");
+ checkBoxImportSiblings
+ .setToolTipText("for a tissue sample or culture all children will be searched and imported");
+ checkBoxImportSiblings.addSelectionListener(new SelectionAdapter() {
+ @Override
+ public void widgetSelected(SelectionEvent e) {
+ configurator.setGetSiblings(!configurator.isGetSiblings());
+ }
+ });
+
+ Button checkBoxAddIndividualsAssociations = new Button(composite, SWT.CHECK);
+ checkBoxAddIndividualsAssociations.setSelection(configurator.isAddIndividualsAssociationsSuchAsSpecimenAndObservations());
+ checkBoxAddIndividualsAssociations.setText("Create an Individual Association for each Specimen");
+ checkBoxAddIndividualsAssociations
+ .setToolTipText("for each specimen associated to a taxon an indiviadual association to this taxon is created");
+ checkBoxAddIndividualsAssociations.addSelectionListener(new SelectionAdapter() {
+ @Override
+ public void widgetSelected(SelectionEvent e) {
+ configurator.setAddIndividualsAssociationsSuchAsSpecimenAndObservations(!configurator.isAddIndividualsAssociationsSuchAsSpecimenAndObservations());
+ }
+ });
+
+ Button checkBoxReuseDescriptiveGroups = new Button(composite, SWT.CHECK);
+ checkBoxReuseDescriptiveGroups.setSelection(configurator.isReuseExistingDescriptiveGroups());
+ checkBoxReuseDescriptiveGroups.setText("Reuse existing descriptive group");
+ checkBoxReuseDescriptiveGroups
+ .setToolTipText("reuse one of the existing descriptive groups or create a new one for every import");
+ checkBoxReuseDescriptiveGroups.addSelectionListener(new SelectionAdapter() {
+ @Override
+ public void widgetSelected(SelectionEvent e) {
+ configurator.setReuseExistingDescriptiveGroups(!configurator.isReuseExistingDescriptiveGroups());
+ }
+ });
+
+ Button checkBoxReuseExistingTaxa = new Button(composite, SWT.CHECK);
+ checkBoxReuseExistingTaxa.setSelection(configurator.isReuseExistingTaxaWhenPossible());
+ checkBoxReuseExistingTaxa.setText("Reuse existing taxa when possible");
+ checkBoxReuseExistingTaxa
+ .setToolTipText("reuse existing taxa when the name matches the identified name of the specimen");
+ checkBoxReuseExistingTaxa.addSelectionListener(new SelectionAdapter() {
+ @Override
+ public void widgetSelected(SelectionEvent e) {
+ configurator.setReuseExistingDescriptiveGroups(!configurator.isReuseExistingDescriptiveGroups());
+ }
+ });
+
+
setControl(composite);
}
+ public void saveConfigToPrefernceStore() {
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ADD_INDIVIDUALS_ASSOCIATIONS_SUCH_AS_SPECIMEN_AND_OBSERVATIONS,
+ configurator.isAddIndividualsAssociationsSuchAsSpecimenAndObservations());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ADD_MEDIA_AS_MEDIASPECIMEN,
+ configurator.isAddMediaAsMediaSpecimen());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ALLOW_REUSE_OTHER_CLASSIFICATIONS,
+ configurator.isAllowReuseOtherClassifications());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_CLASSIFICATIONS,
+ configurator.isDeduplicateClassifications());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_REFERENCES,
+ configurator.isDeduplicateReferences());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DO_SIBLINGS,
+ configurator.isGetSiblings());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_IGNORE_AUTHORSHIP,
+ configurator.isIgnoreAuthorship());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_IGNORE_IMPORT_OF_EXISTING_SPECIMEN,
+ configurator.isIgnoreImportOfExistingSpecimen());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_ACCESSION_NUMBER,
+ configurator.isMapUnitIdToAccessionNumber());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_BARCODE,
+ configurator.isMapUnitIdToBarcode());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TOCATALOG_NUMBER,
+ configurator.isMapUnitIdToCatalogNumber());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MOVE_NEW_TAXA_TO_DEFAULT_CLASSIFICATION,
+ configurator.isMoveNewTaxaToDefaultClassification());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_OVERWRITE_EXISTING_SPECIMEN,
+ configurator.isOverwriteExistingSpecimens());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_DESCRIPTIVE_GROUPS,
+ configurator.isReuseExistingDescriptiveGroups());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_META_DATA,
+ configurator.isReuseExistingMetaData());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_TAXA_WHEN_POSSIBLE,
+ configurator.isReuseExistingTaxaWhenPossible());
+
+ }
+
+ public String createConfigString(){
+ return configurator.toString();
+
+ }
+
+ protected IPreferenceStore doGetPreferenceStore() {
+ return PreferencesUtil.getPreferenceStore();
+ }
}
import eu.etaxonomy.cdm.database.DbSchemaValidation;
import eu.etaxonomy.cdm.io.common.IImportConfigurator.SOURCE_TYPE;
import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
+import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
import eu.etaxonomy.taxeditor.store.CdmStore;
/**
}
CdmStore.getImportManager().runMoniteredOperation(configurator, new File(source), SOURCE_TYPE.INPUTSTREAM);
-
+
return true;
}
@Override
public void init(IWorkbench workbench, IStructuredSelection selection) {
super.init(workbench, selection);
- configurator = CdmStore.getImportManager().AbcdConfigurator();
+ configurator = PreferencesUtil.getAbcdImportConfigurationPreference(true);
}
-
+
@Override
protected void addConfiguratorPage() {
AbcdImportConfiguratorWizardPage configuratorWizardPage = AbcdImportConfiguratorWizardPage.createPage(configurator);
import java.util.UUID;
import org.apache.commons.lang.StringUtils;
+import org.apache.log4j.Logger;
import org.eclipse.equinox.internal.p2.ui.model.MetadataRepositoryElement;
import org.eclipse.jface.preference.IPreferenceStore;
import org.eclipse.jface.window.Window;
import eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator;
import eu.etaxonomy.cdm.common.CdmUtils;
import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper;
+import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
import eu.etaxonomy.cdm.model.common.ICdmBase;
import eu.etaxonomy.cdm.model.common.IDefinedTerm;
import eu.etaxonomy.cdm.model.common.ISimpleTerm;
public static final String P2_REPOSITORIES_DELIM = ",";
public static final String P2_REPOSITORY_FIELDS_DELIM = ";";
-
+ private final static Logger logger = Logger.getLogger(PreferencesUtil.class);
/**
* <p>
* a {@link eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator}
* object.
*/
-// public static CdmPreference setAbcdImportConfigurationPreference(
-// Abcd206ImportConfigurator preferredConfiguration, boolean local) {
-// if (local){
-// /*
-// *
-// public static final String ABCD_IMPORT_CONFIGURATOR_DO_SIBLINGS = "eu.etaxonomy.taxeditor.abcd_import_configurator.doSiblings";
-// public static final String ABCD_IMPORT_CONFIGURATOR_IGNORE_IMPORT_OF_EXISTING_SPECIMEN= "eu.etaxonomy.taxeditor.abcd_import_configurator.ignoreImportOfExistingSpecimen";
-// public static final String ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_TAXA_WHEN_POSSIBLE= "eu.etaxonomy.taxeditor.abcd_import_configurator.reuseExistingTaxaWhenPossible";
-// public static final String ABCD_IMPORT_CONFIGURATOR_IGNORE_AUTHORSHIP= "eu.etaxonomy.taxeditor.abcd_import_configurator.ignoreAuthorship";
-// public static final String ABCD_IMPORT_CONFIGURATOR_REMOVE_COUNTRY_FROM_LOCALITY_TEXT= "eu.etaxonomy.taxeditor.abcd_import_configurator.removeCountryFromLocalityText";
-// public static final String ABCD_IMPORT_CONFIGURATOR_ADD_MEDIA_AS_MEDIASPECIMEN= "eu.etaxonomy.taxeditor.abcd_import_configurator.addMediaAsMediaSpecimen";
-// public static final String ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_META_DATA= "eu.etaxonomy.taxeditor.abcd_import_configurator.reuseExistingMetaData";
-// public static final String ABCD_IMPORT_CONFIGURATOR_ADD_INDIVIDUALS_ASSOCIATIONS_SUCH_AS_SPECIMEN_AND_OBSERVATIONS= "eu.etaxonomy.taxeditor.abcd_import_configurator.addIndividualsAssociationsSuchAsSpecimenAndObservations";
-// public static final String ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_DESCRIPTIVE_GROUPS= "eu.etaxonomy.taxeditor.abcd_import_configurator.reuseExistingDescriptiveGroups";
-// public static final String ABCD_IMPORT_CONFIGURATOR_ALLOW_REUSE_OTHER_CLASSIFICATIONS= "eu.etaxonomy.taxeditor.abcd_import_configurator.allowReuseOtherClassifications";
-// public static final String ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_REFERENCES= "eu.etaxonomy.taxeditor.abcd_import_configurator.deduplicateReferences";
-// public static final String ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_CLASSIFICATIONS= "eu.etaxonomy.taxeditor.abcd_import_configurator.deduplicateClassifications";
-// public static final String ABCD_IMPORT_CONFIGURATOR_MOVE_NEW_TAXA_TO_DEFAULT_CLASSIFICATION= "eu.etaxonomy.taxeditor.abcd_import_configurator.moveNewTaxaToDefaultClassification";
-// public static final String ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TOCATALOG_NUMBER= "eu.etaxonomy.taxeditor.abcd_import_configurator.mapUnitIdToCatalogNumber";
-// public static final String ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_ACCESSION_NUMBER= "eu.etaxonomy.taxeditor.abcd_import_configurator.mapUnitIdToAccessionNumber";
-// public static final String ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_BARCODE= "eu.etaxonomy.taxeditor.abcd_import_configurator.mapUnitIdToBarcode";
-// public static final String ABCD_IMPORT_CONFIGURATOR_OVERWRITE_EXISTING_SPECIMEN= "eu.etaxonomy.taxeditor.abcd_import_configurator.overwriteExistingSpecimens";
-//
-// */
-//
-// getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_SOURCE_URI,
-// getPreferenceKey(preferredConfiguration.getSourceUri()));
-// }
-// else{
-// ICdmRepository controller;
-// controller = CdmStore.getCurrentApplicationConfiguration();
-// PrefKey key = CdmPreference.NewKey(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.NomenclaturalCode);
-// CdmPreference preference = null;
-// if (controller == null){
-// return null;
-// }
-// if (preferredCode == null){
-// preference = controller.getPreferenceService().find(key);
-// if (preference == null){
-// return null;
-// } else{
-// int index = StringUtils.lastIndexOf(preference.getValue(), ".");
-// UUID uuid = UUID.fromString(preference.getValue().substring(index +1, preference.getValue().length()));
-// preferredCode = NomenclaturalCode.getByUuid(uuid);
-//
-// getPreferenceStore().setValue(CDM_NOMENCLATURAL_CODE_KEY,
-// getPreferenceKey(preferredCode));
-// getPreferenceStore().setValue(ALLOW_OVERRIDE_NOMENCLATURAL_CODE_KEY,preference.isAllowOverride());
-// return preference;
-// }
-// } else{
-// preference = CdmPreference.NewInstance(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.NomenclaturalCode, preferredCode.getKey());
-// controller.getPreferenceService().set(preference);
-//
-// }
-// }
-// return null;
-//
-//
-//
-// }
+ public static Abcd206ImportConfigurator getAbcdImportConfigurationPreference(boolean useLocal) {
+
+ Abcd206ImportConfigurator config = Abcd206ImportConfigurator.NewInstance(null,null);
+
+ if (useLocal){
+ config.setAddIndividualsAssociationsSuchAsSpecimenAndObservations(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ADD_INDIVIDUALS_ASSOCIATIONS_SUCH_AS_SPECIMEN_AND_OBSERVATIONS));
+
+ config.setAddMediaAsMediaSpecimen(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ADD_MEDIA_AS_MEDIASPECIMEN));
+
+ config.setAllowReuseOtherClassifications(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ALLOW_REUSE_OTHER_CLASSIFICATIONS));
+ config.setDeduplicateClassifications(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_CLASSIFICATIONS));
+ config.setDeduplicateReferences(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_REFERENCES));
+
+ config.setGetSiblings(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DO_SIBLINGS));
+ config.setIgnoreAuthorship(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_IGNORE_AUTHORSHIP));
+ config.setIgnoreImportOfExistingSpecimen(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_IGNORE_IMPORT_OF_EXISTING_SPECIMEN));
+ config.setMapUnitIdToAccessionNumber(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_ACCESSION_NUMBER));
+ config.setMapUnitIdToBarcode(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_BARCODE));
+ config.setMapUnitIdToCatalogNumber(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TOCATALOG_NUMBER));
+ config.setMoveNewTaxaToDefaultClassification(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MOVE_NEW_TAXA_TO_DEFAULT_CLASSIFICATION));
+ config.setOverwriteExistingSpecimens(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_OVERWRITE_EXISTING_SPECIMEN));
+ config.setReuseExistingDescriptiveGroups(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_DESCRIPTIVE_GROUPS));
+ config.setReuseExistingMetaData(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_META_DATA));
+ config.setReuseExistingTaxaWhenPossible(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_TAXA_WHEN_POSSIBLE));
+ return config;
+
+ }
+ ICdmRepository controller;
+ controller = CdmStore.getCurrentApplicationConfiguration();
+ PrefKey key = CdmPreference.NewKey(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.AbcdImportConfig);
+ CdmPreference preference = null;
+ if (controller == null){
+ return null;
+ }
+ preference = controller.getPreferenceService().find(key);
+ if (preference == null){
+ return config;
+ } else{
+ String configString = preference.getValue();
+ String[] configArray = configString.split(";");
+
+ for (String configItem: configArray){
+ String[] keyValue = configItem.split(":");
+ String keyString = keyValue[0];
+ String valueString = keyValue[1];
+ if (keyString.equals("ignoreImportOfExistingSpecimen")){
+ config.setIgnoreImportOfExistingSpecimen(Boolean.valueOf(valueString));
+ }else if (keyString.equals("addIndividualsAssociationsSuchAsSpecimenAndObservations")){
+ config.setAddIndividualsAssociationsSuchAsSpecimenAndObservations(Boolean.valueOf(valueString));
+ }else if (keyString.equals("reuseExistingTaxaWhenPossible")){
+ config.setReuseExistingTaxaWhenPossible(Boolean.valueOf(valueString));
+ }else if (keyString.equals("ignoreAuthorship")){
+ config.setIgnoreAuthorship(Boolean.valueOf(valueString));
+ }else if (keyString.equals("addMediaAsMediaSpecimen")){
+ config.setAddMediaAsMediaSpecimen(Boolean.valueOf(valueString));
+ }else if (keyString.equals("reuseExistingMetaData")){
+ config.setReuseExistingMetaData(Boolean.valueOf(valueString));
+ }else if (keyString.equals("reuseExistingDescriptiveGroups")){
+ config.setReuseExistingDescriptiveGroups(Boolean.valueOf(valueString));
+ }else if (keyString.equals("allowReuseOtherClassifications")){
+ config.setAllowReuseOtherClassifications(Boolean.valueOf(valueString));
+ }else if (keyString.equals("deduplicateReferences")){
+ config.setDeduplicateReferences(Boolean.valueOf(valueString));
+ }else if (keyString.equals("deduplicateClassifications")){
+ config.setDeduplicateClassifications(Boolean.valueOf(valueString));
+ }else if (keyString.equals("moveNewTaxaToDefaultClassification")){
+ config.setMoveNewTaxaToDefaultClassification(Boolean.valueOf(valueString));
+ }else if (keyString.equals("mapUnitIdToCatalogNumber")){
+ config.setMapUnitIdToCatalogNumber(Boolean.valueOf(valueString));
+ }else if (keyString.equals("mapUnitIdToAccessionNumber")){
+ config.setMapUnitIdToAccessionNumber(Boolean.valueOf(valueString));
+ }else if (keyString.equals("mapUnitIdToBarcode")){
+ config.setMapUnitIdToBarcode(Boolean.valueOf(valueString));
+ }else if (keyString.equals("overwriteExistingSpecimens")){
+ config.setOverwriteExistingSpecimens(Boolean.valueOf(valueString));
+ }else{
+ logger.debug("This key of the abcd configurator needs to be added to the transformer: " + keyString);
+ }
+
+ }
+ }
+ return config;
+
+
+
+ }
}
- private CdmStore(ICdmRepository applicationController,
+ private CdmStore(ICdmRepository repository,
ICdmSource cdmSource) {
- CdmApplicationState.setCurrentAppConfig(applicationController);
+ CdmApplicationState.setCurrentAppConfig(repository);
CdmApplicationState.setCurrentDataChangeService(new CdmUIDataChangeService());
this.cdmSource = cdmSource;
isConnected = true;
BGBM BDI Projects / taxeditor.git / commitdiff