eu.etaxonomy.taxeditor.remoting/pom.xml -text
eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationRemoteConfiguration.java -text
eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationRemoteController.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/CachedCommonServiceImpl.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/CdmEntityCacheManager.java -text
eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/CdmServiceCacher.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/CdmTransientEntityCacher.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/ICachedCommonService.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/LazyLoadingCachingUtils.java -text
eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/remote/CdmPersistentRemoteSource.java -text
eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/remote/CdmRemoteSource.java -text
eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/remote/CdmRemoteSourceBase.java -text
eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/taxeditor/remoting/RemotingTestPluginActivator.java -text
eu.etaxonomy.taxeditor.remoting/src/main/java/org/hibernate/collection/internal/AbstractPersistentCollection.java -text
eu.etaxonomy.taxeditor.remoting/src/main/java/org/hibernate/proxy/AbstractLazyInitializer.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/resources/etc/jetty/.svnignore -text
eu.etaxonomy.taxeditor.remoting/src/main/resources/etc/jetty/jetty-runner-9.2.3.v20140905.jar -text
eu.etaxonomy.taxeditor.remoting/src/main/resources/etc/jetty/start-9.2.3.v20140905.jar -text
eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/config.properties -text
eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/remotingApplicationContext.xml -text
eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/remoting_persistence_security.xml -text
eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/remoting_services_security.xml -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/cdm/polytomouskey/PolytomousKeyTest.java -text
eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/exception/CDMServerException.java -text
eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/BaseRemotingTest.java -text
eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/CDMServer.java -text
eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/CdmPersistentRemoteSourceTest.java -text
eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/CdmRemoteSourceTest.java -text
eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/CdmServerTest.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/CdmServerTestManager.java -text
eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/HttpInvokerServicesTest.java -text
eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/lazyloading/AbstractLazyInitializerTest.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/lazyloading/CdmEntityCacherTest.java -text
eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/lazyloading/CdmServiceCacherTest.java -text
eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/lazyloading/RemoteLazyLoadingTest.java -text
eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/lazyloading/RemotePersistentCollectionTest.java -text
eu.etaxonomy.taxeditor.remoting/src/test/resources/datasources.xml -text
eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/cdm/polytomouskey/PolytomousKeyTest.readPolytmousKeyData.xml -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/cdm/polytomouskey/PolytomousKeyTest.xml -text
eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/cdm/testRemotingApplicationContext.xml -text
eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/taxeditor/lazyloading/AbstractLazyInitializerTest.xml -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/taxeditor/lazyloading/CdmEntityCacherTest.xml -text
eu.etaxonomy.taxeditor.remoting/src/test/resources/h2/cdmTest.h2.db -text
eu.etaxonomy.taxeditor.remoting/src/test/resources/h2/cdmTest.trace.db -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/log4j.properties -text
eu.etaxonomy.taxeditor.remoting/src/test/resources/unitils.properties -text
eu.etaxonomy.taxeditor.store/.classpath -text
eu.etaxonomy.taxeditor.store/.project -text
eu.etaxonomy.taxeditor.remoting/.settings
eu.etaxonomy.taxeditor.remoting/lib
eu.etaxonomy.taxeditor.remoting/lib/*.jar
+eu.etaxonomy.taxeditor.remoting/src/main/resources/etc/jetty/cdmlib-remote-webapp.war
eu.etaxonomy.taxeditor.remoting/target
eu.etaxonomy.taxeditor.store/.settings
eu.etaxonomy.taxeditor.store/hibernate.log
--- /dev/null
+// $Id$
+/**
+* Copyright (C) 2014 EDIT
+* European Distributed Institute of Taxonomy
+* http://www.e-taxonomy.eu
+*
+* The contents of this file are subject to the Mozilla Public License Version 1.1
+* See LICENSE.TXT at the top of this package for the full license terms.
+*/
+package eu.etaxonomy.cdm.api.cache;
+
+import java.util.ArrayList;
+import java.util.HashMap;
+import java.util.HashSet;
+import java.util.List;
+import java.util.Map;
+import java.util.Set;
+import java.util.TreeMap;
+import java.util.TreeSet;
+
+import org.hibernate.collection.internal.PersistentList;
+import org.hibernate.collection.internal.PersistentMap;
+import org.hibernate.collection.internal.PersistentSet;
+import org.hibernate.collection.internal.PersistentSortedMap;
+import org.hibernate.collection.internal.PersistentSortedSet;
+import org.hibernate.collection.spi.PersistentCollection;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.stereotype.Component;
+
+import eu.etaxonomy.cdm.api.cache.LazyLoadingCachingUtils.CollectionType;
+import eu.etaxonomy.cdm.api.service.ICommonService;
+import eu.etaxonomy.cdm.model.common.CdmBase;
+import eu.etaxonomy.cdm.model.common.PersistentMultiLanguageText;
+
+/**
+ * @author cmathew
+ * @date 14 Oct 2014
+ *
+ */
+@Component
+public class CachedCommonServiceImpl implements ICachedCommonService {
+
+
+ @Autowired
+ private ICommonService commonService;
+
+ private static boolean cacheEnabled = true;
+
+ @Autowired
+ private CdmEntityCacheManager cdmEntityCacheManager;
+
+ @Autowired
+ private LazyLoadingCachingUtils lazyLoadingCachingUtils;
+
+
+ public static boolean isCacheEnabled() {
+ return cacheEnabled;
+ }
+
+ public static void setCacheEnabled(boolean cacheEnabled) {
+ CachedCommonServiceImpl.cacheEnabled = cacheEnabled;
+ }
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.taxeditor.remoting.service.ICachedCommonService#find(java.lang.Class, int)
+ */
+ @Override
+ public CdmBase find(Class<? extends CdmBase> clazz, int id){
+ if(cacheEnabled) {
+ CdmBase cdmEntity = cdmEntityCacheManager.getCdmTransientEntityCacher().getFromCache(clazz, id);
+ if(cdmEntity != null) {
+ return cdmEntity;
+ } else {
+ cdmEntity = commonService.find(clazz, id);
+ cdmEntity = cdmEntityCacheManager.getCdmTransientEntityCacher().put(clazz, id, cdmEntity);
+ return cdmEntity;
+ }
+ } else {
+ return commonService.find(clazz, id);
+ }
+ }
+
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.taxeditor.remoting.service.ICachedCommonService#initializeCollection(org.hibernate.collection.spi.PersistentCollection)
+ */
+ @Override
+ public PersistentCollection initializeCollection(PersistentCollection col) {
+ PersistentCollection pc = commonService.initializeCollection(col);
+
+ return pc;
+ }
+
+ @Override
+ public void updatePersistentCollection(CollectionField colf) {
+ switch(colf.getType()) {
+ case MAP:
+ lazyLoadingCachingUtils.updatePersistentCollection((Map)colf.getCollection());
+ case SET:
+ case LIST:
+ default:
+ }
+ }
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.taxeditor.remoting.service.ICachedCommonService#isEmpty(org.hibernate.collection.spi.PersistentCollection)
+ */
+ @Override
+ public boolean isEmpty(PersistentCollection col) {
+ return commonService.isEmpty(col);
+
+ }
+
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.taxeditor.remoting.service.ICachedCommonService#size(org.hibernate.collection.spi.PersistentCollection)
+ */
+ @Override
+ public int size(PersistentCollection col) {
+ return commonService.size(col);
+ }
+
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.taxeditor.remoting.service.ICachedCommonService#get(org.hibernate.collection.spi.PersistentCollection, int)
+ */
+ @Override
+ public Object get(PersistentCollection col, int index) {
+ return commonService.get(col, index);
+ }
+
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.taxeditor.remoting.service.ICachedCommonService#contains(org.hibernate.collection.spi.PersistentCollection, java.lang.Object)
+ */
+ @Override
+ public boolean contains(PersistentCollection col, Object element) {
+ return commonService.contains(col, element);
+ }
+
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.taxeditor.remoting.service.ICachedCommonService#containsKey(org.hibernate.collection.spi.PersistentCollection, java.lang.Object)
+ */
+ @Override
+ public boolean containsKey(PersistentCollection col, Object key) {
+ return commonService.containsKey(col, key);
+ }
+
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.taxeditor.remoting.service.ICachedCommonService#containsValue(org.hibernate.collection.spi.PersistentCollection, java.lang.Object)
+ */
+ @Override
+ public boolean containsValue(PersistentCollection col, Object element) {
+ return commonService.containsValue(col, element);
+ }
+
+ @Override
+ public CollectionField getCollectionField(PersistentCollection pc) {
+ if(pc != null) {
+ if(pc instanceof PersistentSet) {
+ return new CollectionField(new HashSet((Set)pc), CollectionType.SET);
+ }
+ if(pc instanceof PersistentSortedSet) {
+ return new CollectionField(new TreeSet((Set)pc), CollectionType.SET);
+ }
+ if(pc instanceof PersistentList) {
+ return new CollectionField(new ArrayList((List)pc), CollectionType.LIST);
+ }
+ if(pc instanceof PersistentMap || pc instanceof PersistentMultiLanguageText) {
+ return new CollectionField(new HashMap((Map)pc), CollectionType.MAP);
+ }
+ if(pc instanceof PersistentSortedMap) {
+ return new CollectionField(new TreeMap((Map)pc), CollectionType.MAP);
+ }
+ }
+ return null;
+ }
+
+ public class CollectionField {
+ private final Object col;
+ private final CollectionType type;
+ public CollectionField(Object col, CollectionType type) {
+ this.col = col;
+ this.type = type;
+ }
+
+ public Object getCollection() {
+ return this.col;
+ }
+
+ public CollectionType getType() {
+ return this.type;
+ }
+ }
+
+}
--- /dev/null
+// $Id$
+/**
+* Copyright (C) 2014 EDIT
+* European Distributed Institute of Taxonomy
+* http://www.e-taxonomy.eu
+*
+* The contents of this file are subject to the Mozilla Public License Version 1.1
+* See LICENSE.TXT at the top of this package for the full license terms.
+*/
+package eu.etaxonomy.cdm.api.cache;
+
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.stereotype.Component;
+
+/**
+ * @author cmathew
+ * @date 16 Oct 2014
+ *
+ */
+@Component
+public class CdmEntityCacheManager {
+
+ @Autowired
+ private CdmTransientEntityCacher cdmTransientEntityCacher;
+
+
+ public CdmTransientEntityCacher getCdmTransientEntityCacher() {
+ return cdmTransientEntityCacher;
+ }
+}
--- /dev/null
+// $Id$
+/**
+* Copyright (C) 2014 EDIT
+* European Distributed Institute of Taxonomy
+* http://www.e-taxonomy.eu
+*
+* The contents of this file are subject to the Mozilla Public License Version 1.1
+* See LICENSE.TXT at the top of this package for the full license terms.
+*/
+package eu.etaxonomy.cdm.api.cache;
+
+import java.util.UUID;
+
+import org.springframework.stereotype.Component;
+
+import net.sf.ehcache.Cache;
+import net.sf.ehcache.Element;
+import net.sf.ehcache.config.CacheConfiguration;
+import net.sf.ehcache.store.MemoryStoreEvictionPolicy;
+import eu.etaxonomy.cdm.model.common.CdmBase;
+
+/**
+ * @author cmathew
+ * @date 14 Oct 2014
+ *
+ */
+@Component
+public class CdmTransientEntityCacher<T extends CdmBase> extends CdmServiceCacher<T> {
+
+ private static final String ENTITY_CACHE_NAME = "entityCache";
+
+ public CdmTransientEntityCacher() {
+ // Create entity cache
+ getDefaultCacheManager().addCache(new Cache(getEntityCacheConfiguration()));
+ }
+ /**
+ * Returns the default cache configuration.
+ *
+ * @return
+ */
+ private CacheConfiguration getEntityCacheConfiguration() {
+ // For a better understanding on how to size caches, refer to
+ // http://ehcache.org/documentation/configuration/cache-size
+ return new CacheConfiguration(ENTITY_CACHE_NAME, 500)
+ .memoryStoreEvictionPolicy(MemoryStoreEvictionPolicy.LFU)
+ .eternal(false)
+ // default ttl and tti set to 2 hours
+ .timeToLiveSeconds(60*60*2)
+ .timeToIdleSeconds(60*60*2);
+ // This is 2.6.9 API
+ //.maxEntriesLocalDisk(1000);
+ //.persistence(new PersistenceConfiguration().strategy(Strategy.LOCALTEMPSWAP));
+ }
+
+ /**
+ * Returns the cache corresponding to the cache id
+ *
+ * @param cacheId
+ * @return
+ */
+ private static Cache getCache() {
+ return getDefaultCacheManager().getCache(ENTITY_CACHE_NAME);
+ }
+
+
+ /**
+ * Puts the (Key,Value) pair of ({@link java.util.UUID}, {@link eu.etaxonomy.cdm.model.common.CdmBase}),
+ * in the cache corresponding to the given cache id
+ *
+ * @param cacheId
+ * @param uuid
+ * @param cdmEntity
+ */
+ public T put(String id, T cdmEntity) {
+ T cachedCdmEntity = getFromCache(cdmEntity.getUuid());
+ cachedCdmEntity = (cachedCdmEntity == null) ? getFromCache(id) : cachedCdmEntity;
+ if(cachedCdmEntity != null) {
+ return cachedCdmEntity;
+ } else {
+ getCache().put(new Element(id, cdmEntity));
+ return cdmEntity;
+ }
+ }
+
+ @Override
+ public T put(UUID uuid, T cdmEntity) {
+ T cachedCdmEntity = getFromCache(cdmEntity.getUuid());
+ cachedCdmEntity = (cachedCdmEntity == null) ? getFromCache(uuid) : cachedCdmEntity;
+ if(cachedCdmEntity != null) {
+ return cachedCdmEntity;
+ } else {
+ getCache().put(new Element(uuid, cdmEntity));
+ return cdmEntity;
+ }
+ }
+
+ public T put(Class<? extends CdmBase> clazz, int id, T cdmEntity) {
+ String cacheId = generateId(clazz,id);
+ return put(cacheId, cdmEntity);
+ }
+
+ /**
+ * Gets the cache element corresponding to the given {@link java.util.UUID}
+ * in the cache corresponding to the given cache id.
+ *
+ * @param uuid
+ * @return
+ */
+ @Override
+ protected Element getCacheElement(UUID uuid) {
+ return getCache().get(uuid);
+ }
+
+ private Element getCacheElement(String id) {
+ return getCache().get(id);
+ }
+
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.cdm.model.ICdmCacher#getFromCache(java.util.UUID)
+ */
+ @Override
+ public T getFromCache(UUID uuid) {
+ Element e = getCacheElement(uuid);
+ e = (getCacheElement(uuid) == null) ? super.getCacheElement(uuid) : e;
+ if (e == null) {
+ return null;
+ } else {
+ return(T)e.getObjectValue();
+ }
+ }
+
+ public T getFromCache(String id) {
+ Element e = getCacheElement(id);
+ if (e == null) {
+ return null;
+ } else {
+ return (T) e.getObjectValue();
+ }
+ }
+
+
+ public T getFromCache(Class<? extends CdmBase> clazz, int id) {
+ String cacheId = generateId(clazz,id);
+ return getFromCache(cacheId);
+ }
+
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.cdm.model.ICdmCacher#exists(java.util.UUID)
+ */
+ @Override
+ public boolean exists(UUID uuid) {
+ return (getCacheElement(uuid) != null || super.getCacheElement(uuid) != null);
+ }
+
+ public boolean exists(String id) {
+ return (getCacheElement(id) != null);
+ }
+
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.cdm.model.ICdmCacher#existsAndIsNotNull(java.util.UUID)
+ */
+ @Override
+ public boolean existsAndIsNotNull(UUID uuid) {
+ return getFromCache(uuid) != null;
+ }
+
+ public boolean existsAndIsNotNull(String id) {
+ return getFromCache(id) != null;
+ }
+
+
+ private static String generateId(Class<? extends CdmBase> clazz, int id) {
+ return clazz.getName() + String.valueOf(id);
+ }
+
+}
--- /dev/null
+// $Id$
+/**
+ * Copyright (C) 2014 EDIT
+ * European Distributed Institute of Taxonomy
+ * http://www.e-taxonomy.eu
+ *
+ * The contents of this file are subject to the Mozilla Public License Version 1.1
+ * See LICENSE.TXT at the top of this package for the full license terms.
+ */
+package eu.etaxonomy.cdm.api.cache;
+
+import org.hibernate.collection.internal.PersistentMap;
+import org.hibernate.collection.spi.PersistentCollection;
+
+import eu.etaxonomy.cdm.api.cache.CachedCommonServiceImpl.CollectionField;
+import eu.etaxonomy.cdm.model.common.CdmBase;
+
+/**
+ * @author cmathew
+ * @date 14 Oct 2014
+ *
+ */
+public interface ICachedCommonService {
+
+ public CdmBase find(Class<? extends CdmBase> clazz, int id);
+
+ public PersistentCollection initializeCollection(PersistentCollection col);
+
+ public void updatePersistentCollection(CollectionField colf);
+
+ public boolean isEmpty(PersistentCollection col);
+
+ public int size(PersistentCollection col);
+
+ public Object get(PersistentCollection col, int index);
+
+ public boolean contains(PersistentCollection col, Object element);
+
+ public boolean containsKey(PersistentCollection col, Object key);
+
+ public boolean containsValue(PersistentCollection col, Object element);
+
+ public CollectionField getCollectionField(PersistentCollection pc);
+
+}
\ No newline at end of file
--- /dev/null
+// $Id$
+/**
+* Copyright (C) 2014 EDIT
+* European Distributed Institute of Taxonomy
+* http://www.e-taxonomy.eu
+*
+* The contents of this file are subject to the Mozilla Public License Version 1.1
+* See LICENSE.TXT at the top of this package for the full license terms.
+*/
+package eu.etaxonomy.cdm.api.cache;
+
+import java.util.Iterator;
+import java.util.Map;
+
+import org.hibernate.collection.internal.PersistentMap;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.stereotype.Component;
+
+import eu.etaxonomy.cdm.model.common.CdmBase;
+
+/**
+ * @author cmathew
+ * @date 15 Oct 2014
+ *
+ */
+@Component
+public class LazyLoadingCachingUtils {
+
+ @Autowired
+ private CdmEntityCacheManager cdmEntityCacheManager;
+
+ public static enum CollectionType {
+ SET,
+ LIST,
+ MAP;
+
+ @Override
+ public String toString() {
+ return this.name().toLowerCase();
+ }
+ }
+
+ public void updatePersistentCollection(Map map) {
+ if(map == null || map.isEmpty()) {
+ return;
+ }
+
+ int originalMapSize = map.size();
+ Object[] result = new Object[ map.size() * 2 ];
+ Iterator iter = map.entrySet().iterator();
+ int i=0;
+ while ( iter.hasNext() ) {
+ Map.Entry e = (Map.Entry) iter.next();
+ result[i++] = e.getKey();
+ result[i++] = e.getValue();
+ }
+
+ for(i=0; i<result.length;i++) {
+ if(result[i] instanceof CdmBase) {
+ CdmBase cdmBase = (CdmBase)result[i];
+ CdmBase cachedCdmBase = cdmEntityCacheManager.getCdmTransientEntityCacher().put(cdmBase.getClass(),cdmBase.getId(), cdmBase);
+ result[i] = cachedCdmBase;
+ }
+ }
+ map.clear();
+ for(i = 0; i < originalMapSize; i+=2 ) {
+ map.put(
+ result[i],
+ result[i+1]
+ );
+ }
+
+ }
+
+
+
+}
--- /dev/null
+cdmlib-remote-webapp.war
--- /dev/null
+// $Id$
+/**
+* Copyright (C) 2014 EDIT
+* European Distributed Institute of Taxonomy
+* http://www.e-taxonomy.eu
+*
+* The contents of this file are subject to the Mozilla Public License Version 1.1
+* See LICENSE.TXT at the top of this package for the full license terms.
+*/
+package eu.etaxonomy.cdm.polytomouskey;
+
+import java.util.Iterator;
+import java.util.List;
+import java.util.Map;
+import java.util.Set;
+import java.util.UUID;
+
+import org.apache.log4j.Level;
+import org.apache.log4j.Logger;
+import org.hibernate.collection.spi.PersistentCollection;
+import org.junit.Assert;
+import org.junit.BeforeClass;
+import org.junit.Test;
+import org.unitils.dbunit.annotation.DataSet;
+
+import eu.etaxonomy.cdm.api.cache.CachedCommonServiceImpl;
+import eu.etaxonomy.cdm.api.service.ICommonService;
+import eu.etaxonomy.cdm.api.service.IPolytomousKeyService;
+import eu.etaxonomy.cdm.api.service.ITaxonService;
+import eu.etaxonomy.cdm.model.agent.AgentBase;
+import eu.etaxonomy.cdm.model.common.CdmBase;
+import eu.etaxonomy.cdm.model.common.Credit;
+import eu.etaxonomy.cdm.model.common.Extension;
+import eu.etaxonomy.cdm.model.common.IdentifiableSource;
+import eu.etaxonomy.cdm.model.common.Language;
+import eu.etaxonomy.cdm.model.common.LanguageString;
+import eu.etaxonomy.cdm.model.description.KeyStatement;
+import eu.etaxonomy.cdm.model.description.PolytomousKey;
+import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
+import eu.etaxonomy.cdm.model.media.Rights;
+import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
+import eu.etaxonomy.cdm.model.taxon.Taxon;
+import eu.etaxonomy.taxeditor.httpinvoker.BaseRemotingTest;
+import eu.etaxonomy.taxeditor.httpinvoker.CDMServer;
+
+/**
+ * @author cmathew
+ * @date 7 Oct 2014
+ *
+ */
+@DataSet
+public class PolytomousKeyTest extends BaseRemotingTest {
+
+ private static final Logger logger = Logger.getLogger(PolytomousKeyTest.class);
+
+ UUID polytomousKeyUuid = UUID.fromString("0d53ba20-7de4-4baa-bd8a-401048447d66");
+ UUID taxon1Uuid = UUID.fromString("2b336df7-29e8-4f79-985f-66502739d22f");
+
+
+ IPolytomousKeyService polytomousKeyService = getRemoteApplicationController().getPolytomousKeyService();
+ ICommonService commonService = getRemoteApplicationController().getCommonService();
+ ITaxonService taxonService = getRemoteApplicationController().getTaxonService();
+
+ Language english = Language.getLanguageFromUuid(Language.uuidEnglish);
+
+ @BeforeClass
+ public static void initializePolytomousKeyTest() {
+ logger.setLevel(Level.INFO);
+ CDMServer.getInstance().setKeepServerRunning(true);
+
+ initializeController("default", "127.0.0.1", 8080, "", NomenclaturalCode.ICNAFP);
+ }
+
+ @Test
+ public void readAllPolytomousKeys() {
+ List<PolytomousKey> pKeys = polytomousKeyService.list(PolytomousKey.class, null, null, null, null);
+ for(PolytomousKey pKey : pKeys) {
+ logger.info("Polytomous Key : " + pKey.getTitleCache());
+ }
+ }
+
+
+ @Test
+ //@DataSet("PolytomousKeyTest.readPolytmousKeyData.xml")
+ public void readPolytmousKeyData() {
+ PolytomousKey pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
+ Set<Taxon> taxonomicScope = pKey.getTaxonomicScope();
+ Iterator<Taxon> tsItr = taxonomicScope.iterator();
+ Taxon taxon = tsItr.next();
+ logger.info("taxonomic scope : " + taxon.getTitleCache());
+ Assert.assertEquals(taxon.getTitleCache(), "Achillea cretica L. sec. Cyprus");
+ taxon = tsItr.next();
+ logger.info("taxonomic scope : " + taxon.getTitleCache());
+ Assert.assertEquals(taxon.getTitleCache(), "Achillea sec. Cyprus");
+ Assert.assertEquals(tsItr.hasNext(), false);
+
+ List<Credit> credits = pKey.getCredits();
+ AgentBase agent = credits.get(0).getAgent();
+ Assert.assertEquals(agent.getId(),4809);
+ Assert.assertEquals(agent.getTitleCache(),"R. A. Graham");
+ Assert.assertEquals(credits.get(0).getText(),"Credits Text Test");
+
+ Set<Extension> exts = pKey.getExtensions();
+ Iterator<Extension> extItr = exts.iterator();
+ Extension ext = extItr.next();
+ Assert.assertEquals(ext.getValue(), "http://test.com");
+
+ Set<Rights> rights = pKey.getRights();
+ Iterator<Rights> rightsItr = rights.iterator();
+ Rights right = rightsItr.next();
+ Assert.assertEquals(right.getText(),"Rights Text Test");
+
+ Set<IdentifiableSource> sources = pKey.getSources();
+ Iterator<IdentifiableSource> sourcesItr = sources.iterator();
+ IdentifiableSource source = sourcesItr.next();
+ Assert.assertEquals(source.getId(), 23710);
+ source = sourcesItr.next();
+ Assert.assertEquals(source.getId(), 23711);
+
+ // TO DO : Added tests for Annotations , Markers
+ }
+
+ @Test
+ public void readPolytomousKeyDataFromNodes() {
+ PolytomousKey pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
+ PolytomousKeyNode rootNode = pKey.getRoot();
+
+
+ Assert.assertEquals(rootNode.getId(), 2750);
+
+ Assert.assertEquals(rootNode.getChildAt(0).getId(), 2751);
+ Assert.assertEquals(rootNode.getChildAt(0).getParent().getId(), rootNode.getId());
+ Assert.assertEquals(rootNode.getKey().getId(), pKey.getId());
+ Integer sortIndex = (Integer)getFieldValueViaReflection(rootNode.getChildAt(0), "sortIndex");
+ Assert.assertEquals(sortIndex, new Integer(0));
+ String statement = "Capitula without ligulate ray-florets; leaves entire or subentire";
+ Assert.assertEquals(rootNode.getChildAt(0).getStatement().getLabelText(english), statement);
+
+ Assert.assertEquals(rootNode.getChildAt(1).getId(), 2753);
+ Assert.assertEquals(rootNode.getChildAt(1).getParent().getId(), rootNode.getId());
+ Assert.assertEquals(rootNode.getChildAt(1).getKey().getId(), pKey.getId());
+ sortIndex = (Integer)getFieldValueViaReflection(rootNode.getChildAt(1), "sortIndex");
+ Assert.assertEquals(sortIndex, new Integer(1));
+ statement = "Capitula with ligulate ray-florets; leaves pinnatisect";
+ Assert.assertEquals(rootNode.getChildAt(1).getStatement().getLabelText(english), statement);
+
+ Assert.assertEquals(rootNode.getChildAt(1).getChildAt(0).getId(), 2754);
+ Assert.assertEquals(rootNode.getChildAt(1).getChildAt(0).getParent().getId(), rootNode.getChildAt(1).getId());
+ Assert.assertEquals(rootNode.getChildAt(1).getChildAt(0).getKey().getId(), pKey.getId());
+ sortIndex = (Integer)getFieldValueViaReflection(rootNode.getChildAt(1).getChildAt(0), "sortIndex");
+ Assert.assertEquals(sortIndex, new Integer(0));
+ statement = "Ray-florets yellow";
+ Assert.assertEquals(rootNode.getChildAt(1).getChildAt(0).getStatement().getLabelText(english), statement);
+ Assert.assertEquals(rootNode.getChildAt(1).getChildAt(0).getChildAt(0).getTaxon().getTitleCache(), "Achillea arabica Kotschy sec. Cyprus");
+ }
+
+ @Test
+ public void savePolytomousKeyNodeData() {
+ PolytomousKey pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
+ PolytomousKeyNode pkeynode = pkey.getRoot();
+ String newQuestion = "New Question";
+ String newStatement = "New Statement";
+
+ Assert.assertEquals("Question 1",pkeynode.getQuestion().getLabel().get(english).getText());
+ for(PolytomousKeyNode node : pkeynode.getChildren()) {
+
+ node.setQuestion(null);
+ node.setStatement(null);
+ }
+ //FIXME: Add tests for feature after fixing problem
+
+ //Feature feature = pkeynode.getFeature();
+ //Assert.assertEquals(feature.getTitleCache(),"Systematics");
+ //pkeynode.setFeature(null);
+
+ Assert.assertEquals(pkeynode.getChildAt(0).getModifyingText().get(english).getText(),"Modifying Text 1a");
+ String modifyingText = "Modifying Text 1a updated";
+
+ //pkeynode.getChildAt(0).putModifyingText(english, modifyingText);
+
+ Assert.assertEquals(pkeynode.getChildAt(0).getSubkey().getId(),751);
+ Assert.assertEquals(pkeynode.getChildAt(0).getSubkey().getTitleCache(),"Asphodeline");
+ Assert.assertNull(pkeynode.getChildAt(1).getTaxon());
+ Taxon taxon = CdmBase.deproxy(taxonService.find(taxon1Uuid),Taxon.class);
+ pkeynode.getChildAt(1).setTaxon(taxon);
+
+ polytomousKeyService.merge(pkey);
+
+ pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
+ pkeynode = pkey.getRoot();
+ for(PolytomousKeyNode node : pkeynode.getChildren()) {
+ Assert.assertNull(node.getQuestion());
+ node.setQuestion(KeyStatement.NewInstance(english,newQuestion));
+ Assert.assertNull(node.getStatement());
+ node.setStatement(KeyStatement.NewInstance(english,newStatement));
+ }
+ //Assert.assertNull(pkeynode.getFeature());
+ //pkeynode.setFeature(feature);
+
+ //Assert.assertEquals(pkeynode.getChildAt(0).getModifyingText().get(english).getText(),modifyingText);
+ Assert.assertEquals(pkeynode.getChildAt(1).getTaxon(), taxon);
+
+ polytomousKeyService.merge(pkey);
+
+ pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
+ pkeynode = pkey.getRoot();
+ for(PolytomousKeyNode node : pkeynode.getChildren()) {
+ Assert.assertNotNull(node.getQuestion());
+ Map<Language, LanguageString> label = node.getQuestion().getLabel();
+ Assert.assertEquals(newQuestion, label.get(english).getText());
+ Assert.assertNotNull(node.getStatement());
+ Assert.assertEquals(newStatement, node.getStatement().getLabel(english).getText());
+ }
+ //Assert.assertEquals(pkeynode.getFeature().getId(), feature.getId());
+
+ }
+
+ @Test
+ public void savePolytomousKeyNodeDataWithSameSubKey() {
+ //CachedCommonServiceImpl.setCacheEnabled(false);
+ PolytomousKey pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
+ PolytomousKeyNode pkeynode = pkey.getRoot();
+
+ PolytomousKey subkey1 = pkeynode.getChildAt(0).getSubkey();
+ String subkey1title = subkey1.getTitleCache();
+ subkey1.setTitleCache(subkey1title + "test", true);
+
+
+ PolytomousKey subkey2 = pkeynode.getChildAt(1).getChildAt(0).getSubkey();
+ String subkey2title = subkey2.getTitleCache();
+ subkey2.setTitleCache(subkey2title + "test", true);
+
+ Assert.assertNotSame(subkey1, subkey2);
+
+
+ polytomousKeyService.merge(pkey);
+ }
+
+ @Test
+ public void savePolytomousKeyNodeDataWithSameSubKeyUsingService() {
+ CachedCommonServiceImpl.setCacheEnabled(false);
+ PolytomousKey pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
+ PolytomousKeyNode pkeynode = pkey.getRoot();
+
+ PersistentCollection children = (PersistentCollection) pkeynode.getChildren();
+ PolytomousKeyNode childNode0 = (PolytomousKeyNode)commonService.get(children, 0);
+ PolytomousKey subkey1 = CdmBase.deproxy(childNode0.getSubkey(),PolytomousKey.class);
+ String subkey1title = subkey1.getTitleCache();
+ subkey1.setTitleCache(subkey1title + "test", true);
+
+ PolytomousKeyNode childNode1 = (PolytomousKeyNode)commonService.get(children, 1);
+ PolytomousKey subkey2 = CdmBase.deproxy(childNode1.getSubkey(),PolytomousKey.class);
+ String subkey2title = subkey2.getTitleCache();
+ subkey2.setTitleCache(subkey2title + "test", true);
+
+ Assert.assertNotSame(subkey1, subkey2);
+
+ polytomousKeyService.merge(pkey);
+ }
+
+
+ @Test
+ public void savePolytomousKeyNodeDataWithSameLanguageInLabel() {
+ PolytomousKey pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
+ PolytomousKeyNode pkeynode = pkey.getRoot();
+
+ Map<Language, LanguageString> label1 = pkeynode.getQuestion().getLabel();
+ label1.size();
+ //Language lang1 = label1.get(english).getLanguage();
+ //String title1 = lang1.getTitleCache();
+
+ Map<Language, LanguageString> label2 = pkeynode.getChildAt(0).getStatement().getLabel();
+ label2.size();
+ //Language lang2 = label2.get(english).getLanguage();
+ //String title2 = lang2.getTitleCache();
+
+ polytomousKeyService.merge(pkey);
+ }
+
+
+}
--- /dev/null
+// $Id$
+/**
+* Copyright (C) 2014 EDIT
+* European Distributed Institute of Taxonomy
+* http://www.e-taxonomy.eu
+*
+* The contents of this file are subject to the Mozilla Public License Version 1.1
+* See LICENSE.TXT at the top of this package for the full license terms.
+*/
+package eu.etaxonomy.taxeditor.httpinvoker;
+
+import org.apache.log4j.Level;
+import org.apache.log4j.Logger;
+import org.junit.Assert;
+import org.junit.Ignore;
+import org.junit.Test;
+import org.unitils.UnitilsJUnit4;
+
+import eu.etaxonomy.taxeditor.lazyloading.AbstractLazyInitializerTest;
+
+/**
+ * @author cmathew
+ * @date 6 Oct 2014
+ *
+ */
+public class CdmServerTestManager extends UnitilsJUnit4 {
+ private static final Logger logger = Logger.getLogger(CdmServerTestManager.class);
+
+
+ @Test
+ public void stopCdmServer() {
+ Logger.getRootLogger().setLevel(Level.INFO);
+ CDMServer.getInstance().setKeepServerRunning(true);
+ try {
+ CDMServer.getInstance().stop();
+ } catch (Exception e) {
+ Assert.fail("Server could not be stopped. Reason : " + e.getMessage());
+ }
+ }
+
+}
--- /dev/null
+// $Id$
+/**
+* Copyright (C) 2014 EDIT
+* European Distributed Institute of Taxonomy
+* http://www.e-taxonomy.eu
+*
+* The contents of this file are subject to the Mozilla Public License Version 1.1
+* See LICENSE.TXT at the top of this package for the full license terms.
+*/
+package eu.etaxonomy.taxeditor.lazyloading;
+
+import java.util.UUID;
+
+import org.apache.log4j.Level;
+import org.apache.log4j.Logger;
+import org.hibernate.collection.spi.PersistentCollection;
+import org.junit.Assert;
+import org.junit.BeforeClass;
+import org.junit.Test;
+
+import eu.etaxonomy.cdm.api.service.ICommonService;
+import eu.etaxonomy.cdm.api.service.IPolytomousKeyService;
+import eu.etaxonomy.cdm.api.service.ITaxonService;
+import eu.etaxonomy.cdm.model.common.CdmBase;
+import eu.etaxonomy.cdm.model.common.Language;
+import eu.etaxonomy.cdm.model.description.PolytomousKey;
+import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
+import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
+import eu.etaxonomy.taxeditor.httpinvoker.BaseRemotingTest;
+import eu.etaxonomy.taxeditor.httpinvoker.CDMServer;
+
+/**
+ * @author cmathew
+ * @date 16 Oct 2014
+ *
+ */
+public class CdmEntityCacherTest extends BaseRemotingTest {
+
+ private static final Logger logger = Logger.getLogger(CdmEntityCacherTest.class);
+
+ UUID polytomousKeyUuid = UUID.fromString("0d53ba20-7de4-4baa-bd8a-401048447d66");
+ UUID taxon1Uuid = UUID.fromString("2b336df7-29e8-4f79-985f-66502739d22f");
+
+
+ IPolytomousKeyService polytomousKeyService = getRemoteApplicationController().getPolytomousKeyService();
+ ICommonService commonService = getRemoteApplicationController().getCommonService();
+ ITaxonService taxonService = getRemoteApplicationController().getTaxonService();
+
+ Language english = Language.getLanguageFromUuid(Language.uuidEnglish);
+
+ @BeforeClass
+ public static void initializePolytomousKeyTest() {
+ logger.setLevel(Level.INFO);
+ CDMServer.getInstance().setKeepServerRunning(true);
+
+ initializeController("default", "127.0.0.1", 8080, "", NomenclaturalCode.ICNAFP);
+ }
+
+ @Test
+ public void testSimpleCache() {
+
+
+ }
+
+ @Test
+ public void testCachingCdmEntities() {
+ PolytomousKey pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
+ PolytomousKeyNode pkeynode = pkey.getRoot();
+
+ PersistentCollection children = (PersistentCollection) pkeynode.getChildren();
+ PolytomousKeyNode childNode0 = (PolytomousKeyNode)commonService.get(children, 0);
+ PolytomousKey subkey1 = CdmBase.deproxy(childNode0.getSubkey(),PolytomousKey.class);
+ String subkey1title = subkey1.getTitleCache();
+ subkey1.setTitleCache(subkey1title + "test", true);
+
+ PolytomousKeyNode childNode1 = (PolytomousKeyNode)commonService.get(children, 1);
+ PolytomousKey subkey2 = CdmBase.deproxy(childNode1.getSubkey(),PolytomousKey.class);
+ String subkey2title = subkey2.getTitleCache();
+ subkey2.setTitleCache(subkey2title + "test", true);
+
+ Assert.assertNotSame(subkey1, subkey2);
+
+ polytomousKeyService.merge(pkey);
+
+
+ }
+
+
+}
--- /dev/null
+<?xml version="1.0" encoding="UTF-8"?><!--
+ generated by Jailer 4.3, Wed Oct 08 17:58:52 CEST 2014 from cmathew@cmbgbm-t530
+
+ Extraction Model: PolytomousKey where uuid like '0d53ba20-7de4-4baa-bd8a-401048447d66' (extractionmodel/by-example/SbE-PolytomousKey-17-58-33-987.csv)
+ Database URL: jdbc:mysql://127.0.0.1:3306/local-cyprus
+ Database User: root
+
+ Exported Rows: 60
+ AgentBase 1
+ Credit 1
+ Extension 1
+ KeyStatement 10
+ KeyStatement_LanguageString 10
+ LanguageString 10
+ OriginalSourceBase 2
+ PolytomousKey 1
+ PolytomousKeyNode 10
+ PolytomousKey_Credit 1
+ PolytomousKey_Extension 1
+ PolytomousKey_OriginalSourceBase 2
+ PolytomousKey_RightsInfo 1
+ PolytomousKey_Taxon 2
+ RightsInfo 1
+ TaxonBase 6
+
+--><dataset>
+ <PolytomousKey_Extension PolytomousKey_id="1550" extensions_id="24"/>
+
+ <PolytomousKey_Credit PolytomousKey_id="1550" credits_id="23" sortIndex="0"/>
+
+ <LanguageString id="13782" created="2014-03-10 10:03:48.0" uuid="ec0fea40-69dd-4c3e-ab7a-34948037a069" updated="2014-03-10 10:06:32.0" text="Capitula with ligulate ray-florets; leaves pinnatisect" createdby_id="30" updatedby_id="30" language_id="124"/>
+ <LanguageString id="13783" created="2014-03-10 10:04:03.0" uuid="82f8a3a0-567f-4d89-ba10-3f3699111d55" updated="2014-03-10 10:06:32.0" text="Ray-florets yellow" createdby_id="30" updatedby_id="30" language_id="124"/>
+ <LanguageString id="13784" created="2014-03-10 10:04:21.0" uuid="4270501f-1efc-45c2-9e8f-c65f120e8f4c" updated="2014-03-10 10:06:32.0" text="Stem thinly pilose; leaves 10-15 mm wide, with spreading linear-subulate segments; perennial herb" createdby_id="30" updatedby_id="30" language_id="124"/>
+ <LanguageString id="13786" created="2014-03-10 10:04:53.0" uuid="ba17ac94-632f-4d69-ac89-a882e19ff1c5" updated="2014-03-10 10:06:32.0" text="Stem white-tomentose; leaves 1-3 mm wide, with minute overlapping, transverse segments; small subshrubs with a woody base" createdby_id="30" updatedby_id="30" language_id="124"/>
+ <LanguageString id="13789" created="2014-03-10 10:05:16.0" uuid="7c6a7984-8e6f-48b1-86b2-d5d643199bf3" updated="2014-03-10 10:06:32.0" text="Ray-florets white" createdby_id="30" updatedby_id="30" language_id="124"/>
+ <LanguageString id="13790" created="2014-03-10 10:05:34.0" uuid="72bd8bc9-1904-47ab-8bec-b9296a98b244" updated="2014-03-10 10:06:32.0" text="Perennial herb; stem pilose, hairy or glabrescent, but not tomentose; ligules 1-2 mm diam." createdby_id="30" updatedby_id="30" language_id="124"/>
+ <LanguageString id="13792" created="2014-03-10 10:06:15.0" uuid="c5dd35d8-da6a-4d05-b30c-6b55220bd989" updated="2014-03-10 10:06:32.0" text="Shrub with a woody base; stem white-tomentose or woolly; ligules 4-5 mm diam." createdby_id="30" updatedby_id="30" language_id="124"/>
+ <LanguageString id="13796" created="2014-03-10 10:03:25.0" uuid="69cffb28-8a85-478f-bcae-533e20938ccd" updated="2014-03-10 10:06:32.0" text="Capitula without ligulate ray-florets; leaves entire or subentire" createdby_id="30" updatedby_id="30" language_id="124"/>
+ <LanguageString id="14574" created="2014-10-07 16:11:55.0" uuid="e5587acc-d437-4f7a-89be-eb53bf07a5a8" text="New Question" language_id="124"/>
+ <LanguageString id="14575" created="2014-10-07 16:11:55.0" uuid="82bc5779-7985-4507-bdd2-92696f528e25" text="New Question" language_id="124"/>
+
+ <TaxonBase DTYPE="Taxon" id="32" created="2011-03-01 20:11:26.0" uuid="8217ef77-2ab1-4318-bd67-ccd0cdef07c4" protectedtitlecache="false" titleCache="Achillea arabica Kotschy sec. Cyprus" doubtful="false" usenamecache="false" excluded="false" taxonstatusunknown="false" taxonomicchildrencount="0" unplaced="false" createdby_id="11" name_id="32" sec_id="10" publish="true"/>
+ <TaxonBase DTYPE="Taxon" id="35" created="2010-12-21 15:09:43.0" uuid="fade44fd-34b2-455f-861a-d1372b866f06" protectedtitlecache="false" titleCache="Achillea sec. Cyprus" doubtful="false" usenamecache="false" excluded="false" taxonstatusunknown="false" taxonomicchildrencount="0" unplaced="false" createdby_id="11" name_id="35" sec_id="10" publish="true"/>
+ <TaxonBase DTYPE="Taxon" id="36" created="2011-03-01 20:11:26.0" uuid="05f0a2e1-e3c3-4e74-8fec-8a0ae89236c3" protectedtitlecache="false" titleCache="Achillea cretica L. sec. Cyprus" doubtful="false" usenamecache="false" excluded="false" taxonstatusunknown="false" taxonomicchildrencount="0" unplaced="false" createdby_id="11" name_id="36" sec_id="10" publish="true"/>
+ <TaxonBase DTYPE="Taxon" id="37" created="2011-03-01 20:11:26.0" uuid="0f8d18a9-e861-48e8-bfab-83e01a379bc0" protectedtitlecache="false" titleCache="Achillea maritima (L.)Ehrend. & Y.-P. Guo subsp. maritima sec. Cyprus" doubtful="false" usenamecache="false" excluded="false" taxonstatusunknown="false" taxonomicchildrencount="0" unplaced="false" createdby_id="11" name_id="37" sec_id="10" publish="true"/>
+ <TaxonBase DTYPE="Taxon" id="40" created="2010-12-21 15:09:43.0" uuid="2b336df7-29e8-4f79-985f-66502739d22f" protectedtitlecache="false" titleCache="Achillea millefolium L. sec. Cyprus" doubtful="false" usenamecache="false" excluded="false" taxonstatusunknown="false" taxonomicchildrencount="0" unplaced="false" createdby_id="11" name_id="40" sec_id="10" publish="true"/>
+ <TaxonBase DTYPE="Taxon" id="41" created="2011-03-01 20:11:26.0" uuid="094e1af8-efd8-4605-b037-b4f715379562" protectedtitlecache="false" titleCache="Achillea santolinoides subsp. wilhelmsii (K. Koch) Greuter sec. Cyprus" doubtful="false" usenamecache="false" excluded="false" taxonstatusunknown="false" taxonomicchildrencount="0" unplaced="false" createdby_id="11" name_id="41" sec_id="10" publish="true"/>
+
+ <PolytomousKey_Taxon polytomousKey_id="1550" taxon_id="35"/>
+ <PolytomousKey_Taxon polytomousKey_id="1550" taxon_id="36"/>
+
+ <RightsInfo id="25" created="2014-10-08 13:52:22.0" uuid="d7e7d422-899e-4212-8261-4f50b928c256" updated="2014-10-08 13:52:58.0" text="Rights Text Test" createdby_id="10" updatedby_id="10" agent_id="12404" type_id="2056"/>
+
+ <PolytomousKeyNode id="2750" created="2014-03-10 10:02:35.0" uuid="75e4c924-ff58-4ee7-a59d-fd9173517d08" updated="2014-03-10 10:02:42.0" nodenumber="1" createdby_id="30" updatedby_id="30" key_id="1550"/>
+ <PolytomousKeyNode id="2751" created="2014-03-10 10:02:52.0" uuid="23e51ff7-11b1-443b-aff2-3fe8b5ace9fe" sortindex="0" key_id="1550" question_id="2764" statement_id="2467" subkey_id="751" taxon_id="37" parent_id="2750"/>
+ <PolytomousKeyNode id="2752" created="2014-03-10 10:03:16.0" uuid="dcf326f7-c0ad-4e76-b64e-43aea11f767c" key_id="1550"/>
+ <PolytomousKeyNode id="2753" created="2014-03-10 10:03:38.0" uuid="b775c027-13c0-4b87-8aa9-712faeaafbdc" updated="2014-03-10 10:06:32.0" nodenumber="2" sortindex="1" createdby_id="30" updatedby_id="30" key_id="1550" question_id="2765" statement_id="2460" parent_id="2750"/>
+ <PolytomousKeyNode id="2754" created="2014-03-10 10:03:52.0" uuid="df5d5922-35de-43d5-9d46-7730ae28eeb3" updated="2014-03-10 10:06:32.0" nodenumber="3" sortindex="0" createdby_id="30" updatedby_id="30" key_id="1550" statement_id="2461" parent_id="2753"/>
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+ <Credit id="23" created="2014-10-08 13:51:29.0" uuid="dd57ac87-ce85-49f3-a2ea-851fec1725f2" updated="2014-10-08 13:52:58.0" text="Credits Text Test" createdby_id="10" updatedby_id="10" language_id="124" agent_id="4809"/>
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+ <PolytomousKey_OriginalSourceBase PolytomousKey_id="1550" sources_id="23710"/>
+ <PolytomousKey_OriginalSourceBase PolytomousKey_id="1550" sources_id="23711"/>
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+ <PolytomousKey_RightsInfo PolytomousKey_id="1550" rights_id="25"/>
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+
+</dataset>
--- /dev/null
+<?xml version="1.0" encoding="UTF-8"?><!--
+ generated by Jailer 4.3, Thu Oct 09 18:00:09 CEST 2014 from cmathew@cmbgbm-t530
+
+ Extraction Model: PolytomousKey where uuid like '0d53ba20-7de4-4baa-bd8a-401048447d66' (extractionmodel/by-example/SbE-PolytomousKey-17-59-56-907.csv)
+ Database URL: jdbc:mysql://127.0.0.1:3306/local-cyprus
+ Database User: root
+
+ Exported Rows: 79
+ AgentBase 1
+ Credit 1
+ DefinedTermBase 1
+ Extension 1
+ KeyStatement 10
+ KeyStatement_LanguageString 10
+ LanguageString 19
+ OriginalSourceBase 2
+ PolytomousKey 2
+ PolytomousKeyNode 10
+ PolytomousKeyNode_LanguageString 9
+ PolytomousKey_Credit 1
+ PolytomousKey_Extension 1
+ PolytomousKey_OriginalSourceBase 2
+ PolytomousKey_RightsInfo 1
+ PolytomousKey_Taxon 1
+ RightsInfo 1
+ TaxonBase 6
+
+--><dataset>
+ <PolytomousKey_Extension PolytomousKey_id="1550" extensions_id="10"/>
+
+ <PolytomousKey_Credit PolytomousKey_id="1550" credits_id="20" sortIndex="0"/>
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+ <PolytomousKeyNode_LanguageString PolytomousKeyNode_id="2751" modifyingtext_id="13780" modifyingtext_mapkey_id="124"/>
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+ <PolytomousKey_Taxon polytomousKey_id="1550" taxon_id="35"/>
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+ <PolytomousKey_RightsInfo PolytomousKey_id="1550" rights_id="10"/>
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+</dataset>
--- /dev/null
+<?xml version="1.0" encoding="UTF-8"?><!--
+ generated by Jailer 4.3, Thu Oct 09 18:00:09 CEST 2014 from cmathew@cmbgbm-t530
+
+ Extraction Model: PolytomousKey where uuid like '0d53ba20-7de4-4baa-bd8a-401048447d66' (extractionmodel/by-example/SbE-PolytomousKey-17-59-56-907.csv)
+ Database URL: jdbc:mysql://127.0.0.1:3306/local-cyprus
+ Database User: root
+
+ Exported Rows: 79
+ AgentBase 1
+ Credit 1
+ DefinedTermBase 1
+ Extension 1
+ KeyStatement 10
+ KeyStatement_LanguageString 10
+ LanguageString 19
+ OriginalSourceBase 2
+ PolytomousKey 2
+ PolytomousKeyNode 10
+ PolytomousKeyNode_LanguageString 9
+ PolytomousKey_Credit 1
+ PolytomousKey_Extension 1
+ PolytomousKey_OriginalSourceBase 2
+ PolytomousKey_RightsInfo 1
+ PolytomousKey_Taxon 1
+ RightsInfo 1
+ TaxonBase 6
+
+--><dataset>
+ <PolytomousKey_Extension PolytomousKey_id="1550" extensions_id="10"/>
+
+ <PolytomousKey_Credit PolytomousKey_id="1550" credits_id="20" sortIndex="0"/>
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+ <PolytomousKey_RightsInfo PolytomousKey_id="1550" rights_id="10"/>
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+ <KeyStatement_LanguageString KeyStatement_id="2761" label_id="14571" label_mapkey_id="124"/>
+
+ <PolytomousKey id="751" created="2013-03-24 11:17:08.0" uuid="9d8bf4f6-a70a-4b80-8556-2ccfb436ff01" protectedtitlecache="true" titleCache="Asphodeline" createdby_id="30" startNumber="1"/>
+ <PolytomousKey id="1550" created="2014-03-10 10:02:35.0" uuid="0d53ba20-7de4-4baa-bd8a-401048447d66" updated="2014-03-10 10:02:42.0" protectedtitlecache="true" titleCache="Achillea" createdby_id="30" updatedby_id="30" root_id="2750" startNumber="1"/>
+
+ <OriginalSourceBase DTYPE="IdentifiableSource" id="23710" created="2014-03-10 10:06:57.0" uuid="95e05e82-499d-4b8a-ad6b-1085f74a7496" updated="2014-03-10 10:07:33.0" sourcedObj_type="eu.etaxonomy.cdm.model.description.PolytomousKey" sourcedObj_id="1550" createdby_id="30" updatedby_id="30" citation_id="1730" sourceType="PTS"/>
+ <OriginalSourceBase DTYPE="IdentifiableSource" id="23711" created="2014-03-10 10:06:48.0" uuid="f77555fe-0d98-4c9f-98ed-a5bca6b1e342" updated="2014-03-10 10:07:33.0" sourcedObj_type="eu.etaxonomy.cdm.model.description.PolytomousKey" sourcedObj_id="1550" createdby_id="30" updatedby_id="30" citation_id="50" sourceType="PTS"/>
+
+
+</dataset>
--- /dev/null
+### ************ APPENDER ***********************************###
+
+### direct log messages to stdout ###
+log4j.appender.stdout=org.apache.log4j.ConsoleAppender
+log4j.appender.stdout.Target=System.out
+log4j.appender.stdout.layout=org.apache.log4j.PatternLayout
+log4j.appender.stdout.layout.ConversionPattern=%d{ABSOLUTE} %5p %c{1}:%L - %m%n
+
+
+### ************* LOG LEVELS *********************************###
+
+### set log levels - for more verbose logging change 'info' to 'debug' ###
+### levels: error, warn, debug, info
+log4j.rootLogger=INFO, stdout
+
+### set directory-specific levels below
+log4j.logger.eu.etaxonomy.taxeditor = INFO
\ No newline at end of file
BGBM BDI Projects / taxeditor.git / commitdiff