<?xml version="1.0" encoding="UTF-8"?>
<classpath>
+ <classpathentry exported="true" kind="lib" path="lib/tic-swt-2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/core-1.9.2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/sequencing-1.9.2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/tic-core-2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/libralign-biojava1-0-SNAPSHOT.jar"/>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
<classpathentry including="**/*.java" kind="src" path="src"/>
- <classpathentry kind="lib" path="commons-logging-1.1.1.jar" sourcepath="/home/pplitzner/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1-sources.jar">
- <attributes>
- <attribute name="javadoc_location" value="jar:file:/home/pplitzner/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1-javadoc.jar!/"/>
- </attributes>
- </classpathentry>
- <classpathentry exported="true" kind="lib" path="bioinfweb-commons-bio-2-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="bioinfweb-commons-core-2-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="bioinfweb-commons-swing-2-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="bioinfweb-commons-swt-2-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="libralign-core-0-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="libralign-swt-0-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="tic-core-2-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="tic-swt-2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-bio-2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-core-2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-swing-2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-swt-2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/libralign-core-0-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/libralign-swt-0-SNAPSHOT.jar"/>
<classpathentry kind="output" path="target/classes"/>
</classpath>
<nature>org.eclipse.jdt.core.javanature</nature>
<nature>org.eclipse.pde.PluginNature</nature>
</natures>
- <linkedResources>
- <link>
- <name>bioinfweb-commons-bio-2-SNAPSHOT.jar</name>
- <type>1</type>
- <location>/home/pplitzner/.m2/repository/info/bioinfweb/commons/java/bioinfweb-commons-bio/2-SNAPSHOT/bioinfweb-commons-bio-2-SNAPSHOT.jar</location>
- </link>
- <link>
- <name>bioinfweb-commons-core-2-SNAPSHOT.jar</name>
- <type>1</type>
- <location>/home/pplitzner/.m2/repository/info/bioinfweb/commons/java/bioinfweb-commons-core/2-SNAPSHOT/bioinfweb-commons-core-2-SNAPSHOT.jar</location>
- </link>
- <link>
- <name>bioinfweb-commons-swing-2-SNAPSHOT.jar</name>
- <type>1</type>
- <location>/home/pplitzner/.m2/repository/info/bioinfweb/commons/java/bioinfweb-commons-swing/2-SNAPSHOT/bioinfweb-commons-swing-2-SNAPSHOT.jar</location>
- </link>
- <link>
- <name>bioinfweb-commons-swt-2-SNAPSHOT.jar</name>
- <type>1</type>
- <location>/home/pplitzner/.m2/repository/info/bioinfweb/commons/java/bioinfweb-commons-swt/2-SNAPSHOT/bioinfweb-commons-swt-2-SNAPSHOT.jar</location>
- </link>
- <link>
- <name>commons-logging-1.1.1.jar</name>
- <type>1</type>
- <location>/home/pplitzner/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.jar</location>
- </link>
- <link>
- <name>libralign-core-0-SNAPSHOT.jar</name>
- <type>1</type>
- <location>/home/pplitzner/.m2/repository/info/bioinfweb/libralign/libralign-core/0-SNAPSHOT/libralign-core-0-SNAPSHOT.jar</location>
- </link>
- <link>
- <name>libralign-swt-0-SNAPSHOT.jar</name>
- <type>1</type>
- <location>/home/pplitzner/.m2/repository/info/bioinfweb/libralign/libralign-swt/0-SNAPSHOT/libralign-swt-0-SNAPSHOT.jar</location>
- </link>
- <link>
- <name>tic-core-2-SNAPSHOT.jar</name>
- <type>1</type>
- <location>/home/pplitzner/.m2/repository/info/bioinfweb/tic/tic-core/2-SNAPSHOT/tic-core-2-SNAPSHOT.jar</location>
- </link>
- <link>
- <name>tic-swt-2-SNAPSHOT.jar</name>
- <type>1</type>
- <location>/home/pplitzner/.m2/repository/info/bioinfweb/tic/tic-swt/2-SNAPSHOT/tic-swt-2-SNAPSHOT.jar</location>
- </link>
- </linkedResources>
</projectDescription>
Require-Bundle: org.eclipse.ui,
org.eclipse.core.runtime,
org.eclipse.core.expressions,
- eu.etaxonomy.taxeditor.store,
eu.etaxonomy.taxeditor.cdmlib,
- eu.etaxonomy.taxeditor.editor
+ eu.etaxonomy.taxeditor.store,
+ eu.etaxonomy.taxeditor.editor,
+ eu.etaxonomy.taxeditor.bulkeditor
Bundle-RequiredExecutionEnvironment: JavaSE-1.7
Bundle-ActivationPolicy: lazy
Bundle-Vendor: EDIT
-Bundle-ClassPath: .,
- commons-logging-1.1.1.jar,
- bioinfweb-commons-bio-2-SNAPSHOT.jar,
- bioinfweb-commons-core-2-SNAPSHOT.jar,
- bioinfweb-commons-swing-2-SNAPSHOT.jar,
- bioinfweb-commons-swt-2-SNAPSHOT.jar,
- libralign-core-0-SNAPSHOT.jar,
- libralign-swt-0-SNAPSHOT.jar,
- tic-core-2-SNAPSHOT.jar,
- tic-swt-2-SNAPSHOT.jar
-Import-Package: eu.etaxonomy.cdm.model.molecular
+Bundle-ClassPath: lib/bioinfweb-commons-bio-2-SNAPSHOT.jar,
+ lib/bioinfweb-commons-core-2-SNAPSHOT.jar,
+ lib/bioinfweb-commons-swing-2-SNAPSHOT.jar,
+ lib/bioinfweb-commons-swt-2-SNAPSHOT.jar,
+ lib/libralign-core-0-SNAPSHOT.jar,
+ lib/libralign-swt-0-SNAPSHOT.jar,
+ lib/libralign-biojava1-0-SNAPSHOT.jar,
+ lib/core-1.9.2-SNAPSHOT.jar,
+ lib/sequencing-1.9.2-SNAPSHOT.jar,
+ lib/tic-core-2-SNAPSHOT.jar,
+ lib/tic-swt-2-SNAPSHOT.jar
-source.. = src/
output.. = bin/
bin.includes = META-INF/,\
plugin.xml,\
- lib/libralign-core-0-20150713.112743-1.jar,\
- lib/libralign-swt-0-20150713.113034-1.jar,\
icons/,\
- OSGI-INF/
-source.. = src/
+ OSGI-INF/,\
+ lib/bioinfweb-commons-bio-2-SNAPSHOT.jar,\
+ lib/bioinfweb-commons-core-2-SNAPSHOT.jar,\
+ lib/bioinfweb-commons-swing-2-SNAPSHOT.jar,\
+ lib/bioinfweb-commons-swt-2-SNAPSHOT.jar,\
+ lib/libralign-core-0-SNAPSHOT.jar,\
+ lib/libralign-swt-0-SNAPSHOT.jar,\
+ lib/libralign-biojava1-0-SNAPSHOT.jar,\
+ lib/core-1.9.2-SNAPSHOT.jar,\
+ lib/sequencing-1.9.2-SNAPSHOT.jar,\
+ lib/tic-core-2-SNAPSHOT.jar,\
+ lib/tic-swt-2-SNAPSHOT.jar
src.includes = src/,\
plugin.xml,\
icons/,\
<name>Molecular Bundle</name>
<description>Provides editors, views and operations for handling molecular data and alignments</description>
- <!-- <build> -->
- <!-- <plugins> -->
- <!-- <plugin> -->
- <!-- <groupId>org.apache.maven.plugins</groupId> -->
- <!-- <artifactId>maven-dependency-plugin</artifactId> -->
- <!-- <version>2.4</version> -->
- <!-- <executions> -->
- <!-- <execution> -->
- <!-- <id>copy-dependencies</id> -->
- <!-- <phase>validate</phase> -->
- <!-- <goals> -->
- <!-- <goal>copy-dependencies</goal> -->
- <!-- </goals> -->
- <!-- <configuration> -->
- <!-- <includeGroupIds>info.bioinfweb.libralign, info.bioinfweb.commons.java</includeGroupIds> -->
- <!-- <includeArtifactIds>libralign-swt, libralign-core</includeArtifactIds> -->
- <!-- <outputDirectory>lib</outputDirectory> -->
- <!-- <overWriteReleases>true</overWriteReleases> -->
- <!-- <overWriteSnapshots>true</overWriteSnapshots> -->
- <!-- <excludeTransitive>true</excludeTransitive> -->
- <!-- </configuration> -->
- <!-- </execution> -->
- <!-- <execution> -->
- <!-- <id>copy-dependencies-sources</id> -->
- <!-- <phase>validate</phase> -->
- <!-- <goals> -->
- <!-- <goal>copy-dependencies</goal> -->
- <!-- </goals> -->
- <!-- <configuration> -->
- <!-- <classifier>sources</classifier> -->
- <!-- <includeArtifactIds>cdmlib-commons,cdmlib-model,cdmlib-persistence,cdmlib-remote,cdmlib-print,cdmlib-services,cdmlib-ext,cdmlib-io</includeArtifactIds> -->
- <!-- <outputDirectory>lib</outputDirectory> -->
- <!-- <overWriteReleases>true</overWriteReleases> -->
- <!-- <overWriteSnapshots>true</overWriteSnapshots> -->
- <!-- <excludeTransitive>true</excludeTransitive> -->
- <!-- <failOnMissingClassifierArtifact>false</failOnMissingClassifierArtifact> -->
- <!-- </configuration> -->
- <!-- </execution> -->
- <!-- </executions> -->
- <!-- </plugin> -->
- <!-- </plugins> -->
- <!-- </build> -->
+ <build>
+ <plugins>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-dependency-plugin</artifactId>
+ <version>2.4</version>
+ <executions>
+ <execution>
+ <id>copy-dependencies</id>
+ <phase>validate</phase>
+ <goals>
+ <goal>copy-dependencies</goal>
+ </goals>
+ <configuration>
+ <includeArtifactIds>libralign-swt, libralign-core,
+ bioinfweb-commons-swt, bioinfweb-commons-core,
+ bioinfweb-commons-bio, bioinfweb-commons-swing,
+ tic-core, libralign-biojava1, core, sequencing, tic-swt</includeArtifactIds>
+ <outputDirectory>lib</outputDirectory>
+ <overWriteReleases>true</overWriteReleases>
+ <overWriteSnapshots>true</overWriteSnapshots>
+ <excludeTransitive>true</excludeTransitive>
+ </configuration>
+ </execution>
+ <!-- <execution> -->
+ <!-- <id>copy-dependencies-sources</id> -->
+ <!-- <phase>validate</phase> -->
+ <!-- <goals> -->
+ <!-- <goal>copy-dependencies</goal> -->
+ <!-- </goals> -->
+ <!-- <configuration> -->
+ <!-- <classifier>sources</classifier> -->
+ <!-- <includeArtifactIds>cdmlib-commons,cdmlib-model,cdmlib-persistence,cdmlib-remote,cdmlib-print,cdmlib-services,cdmlib-ext,cdmlib-io</includeArtifactIds> -->
+ <!-- <outputDirectory>lib</outputDirectory> -->
+ <!-- <overWriteReleases>true</overWriteReleases> -->
+ <!-- <overWriteSnapshots>true</overWriteSnapshots> -->
+ <!-- <excludeTransitive>true</excludeTransitive> -->
+ <!-- <failOnMissingClassifierArtifact>false</failOnMissingClassifierArtifact> -->
+ <!-- </configuration> -->
+ <!-- </execution> -->
+ </executions>
+ </plugin>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-antrun-plugin</artifactId>
+ <version>1.7</version>
+ <executions>
+ <execution>
+ <id>remove-existing-jars</id>
+ <phase>clean</phase>
+ <goals>
+ <goal>run</goal>
+ </goals>
+ <configuration>
+ <target>
+ <echo>Remove all jars</echo>
+ <delete>
+ <fileset dir="./lib" includes="*" />
+ </delete>
+ </target>
+ </configuration>
+ </execution>
+ <execution>
+ <id>update-snapshot-jar-names</id>
+ <phase>validate</phase>
+ <goals>
+ <goal>run</goal>
+ </goals>
+ <configuration>
+ <target>
+ <echo>Update jars to SNAPSHOT when build with
+ timestamp</echo>
+ <move todir="./lib">
+ <fileset dir="./lib" />
+ <mapper type="regexp"
+ from="(^bioinfweb\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
+ </move>
+ <move todir="./lib">
+ <fileset dir="./lib" />
+ <mapper type="regexp"
+ from="(^libralign\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
+ </move>
+ <move todir="./lib">
+ <fileset dir="./lib" />
+ <mapper type="regexp"
+ from="(^tic\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
+ </move>
+ <move todir="./lib">
+ <fileset dir="./lib" />
+ <mapper type="regexp"
+ from="(^core\-[0-9]\.[0-9]\.[0-9])(\.jar)" to="\1-SNAPSHOT\2" />
+ </move>
+ <move todir="./lib">
+ <fileset dir="./lib" />
+ <mapper type="regexp"
+ from="(^sequencing\-[0-9]\.[0-9]\.[0-9])(\.jar)" to="\1-SNAPSHOT\2" />
+ </move>
+ </target>
+ </configuration>
+ </execution>
+ </executions>
+ </plugin>
+ </plugins>
+ </build>
<dependencies>
+ <!-- LibrAling -->
<dependency>
<groupId>info.bioinfweb.libralign</groupId>
<artifactId>libralign-core</artifactId>
<artifactId>libralign-biojava1</artifactId>
<version>0-SNAPSHOT</version>
</dependency>
-<!-- <dependency>
+ <!-- commons -->
+ <dependency>
<groupId>info.bioinfweb.commons.java</groupId>
<artifactId>bioinfweb-commons-swt</artifactId>
<version>2-SNAPSHOT</version>
<artifactId>bioinfweb-commons-swing</artifactId>
<version>2-SNAPSHOT</version>
</dependency>
+ <!-- tic -->
<dependency>
<groupId>info.bioinfweb.tic</groupId>
<artifactId>tic-core</artifactId>
<version>2-SNAPSHOT</version>
</dependency>
+ <dependency>
+ <groupId>info.bioinfweb.tic</groupId>
+ <artifactId>tic-swt</artifactId>
+ <version>2-SNAPSHOT</version>
+ </dependency>
+ <!-- biojava -->
<dependency>
<groupId>org.biojava</groupId>
<artifactId>core</artifactId>
<groupId>org.biojava</groupId>
<artifactId>sequencing</artifactId>
<version>1.9.2</version>
- </dependency> -->
+ </dependency>
</dependencies>
<repositories>