setDirty();
}
};
- public final Clipboard CLIPBOARD = new Clipboard(Display.getCurrent()); //TODO Move to global EDITor class.
-
+ private final AlignmentEditorActionUpdater ACTION_UPDATER = new AlignmentEditorActionUpdater();
++ public final Clipboard CLIPBOARD = new Clipboard(Display.getCurrent()); //TODO Move to global EDITor class.
++
private MultipleAlignmentsContainer alignmentsContainer = null;
private final Map<Integer, SingleReadAlignment> cdmMap = new TreeMap<Integer, SingleReadAlignment>(); //TODO Move this to ContigSequenceDataProvider
}
}
-
+
private void registerEditSettingListener(MultipleAlignmentsContainer container) {
- container.getEditSettings().addListener(new EditSettingsListener() {
- @Override
- public void workingModeChanged(EditSettingsChangeEvent e) {} // Currently nothing to do
-
- @Override
- public void insertLeftInDataAreaChanged(EditSettingsChangeEvent e) {
- updateStatusBar();
- refreshToolbarElement(ToggleLeftRightInsertionHandler.COMMAND_ID);
- }
-
- @Override
- public void insertChanged(EditSettingsChangeEvent e) {
- updateStatusBar();
- refreshToolbarElement(ToggleInsertOverwriteHandler.COMMAND_ID);
- }
- });
+ container.getEditSettings().addListener(new EditSettingsListener() {
+ @Override
+ public void workingModeChanged(EditSettingsChangeEvent e) {} // Currently nothing to do
+
+ @Override
+ public void insertLeftInDataAreaChanged(EditSettingsChangeEvent e) {
+ updateStatusBar();
+ refreshToolbarElement(ToggleLeftRightInsertionHandler.COMMAND_ID);
+ }
+
+ @Override
+ public void insertChanged(EditSettingsChangeEvent e) {
+ updateStatusBar();
+ refreshToolbarElement(ToggleInsertOverwriteHandler.COMMAND_ID);
+ }
+ });
}
private AlignmentArea createConsensusHintArea(MultipleAlignmentsContainer container,
AlignmentArea labeledArea) {
- AlignmentArea result = new AlignmentArea(container);
- result.setAllowVerticalScrolling(false);
- result.getDataAreas().getBottomAreas().add(
- new ConsensusSequenceArea(result.getContentArea(), labeledArea));
- return result;
- }
+ AlignmentArea result = new AlignmentArea(container);
+ result.setAllowVerticalScrolling(false);
+ result.getDataAreas().getBottomAreas().add(
+ new ConsensusSequenceArea(result.getContentArea(), labeledArea));
+ return result;
+ }
-
+
private MultipleAlignmentsContainer getAlignmentsContainer() {
if (alignmentsContainer == null) {
alignmentsContainer = new MultipleAlignmentsContainer();
-
+
AlignmentAreaList list = alignmentsContainer.getAlignmentAreas();
AlignmentArea readsArea = createEditableAlignmentArea(alignmentsContainer, true);
+ readsArea.getSelection().addSelectionListener(ACTION_UPDATER);
list.add(createIndexArea(alignmentsContainer, readsArea));
list.add(readsArea); // Make sure READS_AREA_INDEX is correct.
- list.add(createEditableAlignmentArea(alignmentsContainer, false)); // Make sure COMSENSUS_AREA_INDEX is correct.
+ AlignmentArea editableConsensusArea = createEditableAlignmentArea(alignmentsContainer, false);
+ editableConsensusArea.getSelection().addSelectionListener(ACTION_UPDATER);
+ list.add(editableConsensusArea); // Make sure COMSENSUS_AREA_INDEX is correct.
list.add(createConsensusHintArea(alignmentsContainer, readsArea));
-
+
registerEditSettingListener(alignmentsContainer);
}
return alignmentsContainer;
return getAlignmentsContainer().getAlignmentAreas().get(READS_AREA_INDEX);
}
-
+
- private AlignmentArea getEditableConsensusArea() {
+ public AlignmentArea getEditableConsensusArea() {
return getAlignmentsContainer().getAlignmentAreas().get(EDITABLE_CONSENSUS_AREA_INDEX);
}
-
-
+
+
+ /**
+ * Checks whether {@link #getReadsArea()} or {@link #getEditableConsensusArea()} currently
- * have the user focus and returns the according component.
- *
++ * have the user focus and returns the according component.
++ *
+ * @return either the reads or the consensus alignment area or {@code null} if none of these
+ * components is currently focused
+ */
+ public AlignmentArea getFocusedArea() {
+ AlignmentArea result = getReadsArea();
+ if (hasFocus(result)) {
+ return result;
+ }
+ else {
+ result = getEditableConsensusArea();
+ if (hasFocus(result)) {
+ return result;
+ }
+ else {
+ return null;
+ }
+ }
+ }
-
-
++
++
+ /**
+ * Checks whether the specified alignment area or one of its subcomponents currently has the
+ * focus.
- *
- * @param area the alignment area to be checked (Can only be {@link #getReadsArea()} or
++ *
++ * @param area the alignment area to be checked (Can only be {@link #getReadsArea()} or
+ * {@link #getEditableConsensusArea()}.)
+ * @return {@code true} if the specified component is focused and is either equal to
+ * {@link #getReadsArea()} or {@link #getEditableConsensusArea()}or {@code false} otherwise
+ */
+ private boolean hasFocus(AlignmentArea area) {
+ return SWTUtils.childHasFocus((Composite)area.getToolkitComponent());
+ }
-
-
++
++
public boolean hasPherogram(int sequenceID) {
return getReadsArea().getDataAreas().getSequenceAreas(sequenceID).size() > PHEROGRAM_AREA_INDEX;
}
//TODO Can the consensus sequence also be null? / Should it be created here, if nothing is in the DB?
}
-
+
- /* (non-Javadoc)
- * @see org.eclipse.ui.part.WorkbenchPart#createPartControl(org.eclipse.swt.widgets.Composite)
- */
@Override
public void createPartControl(Composite parent) {
SWTComponentFactory.getInstance().getSWTComponent(getAlignmentsContainer(), parent, SWT.NONE);
}
}
-
+
- private void updateStatusBar() {
+ @Override
+ public void dispose() {
+ Display.getCurrent().removeFilter(SWT.FocusIn, ACTION_UPDATER);
+ Display.getCurrent().removeFilter(SWT.FocusOut, ACTION_UPDATER);
+ CLIPBOARD.dispose();
++ ((AlignmentEditorInput)getEditorInput()).dispose();
+ super.dispose();
+ }
+
+
+ private void updateStatusBar() {
IActionBars bars = getEditorSite().getActionBars();
bars.getStatusLineManager().setMessage("Edit mode: " +
(getReadsArea().getEditSettings().isInsert() ? "Insert" : "Overwrite") + " " +
return shifts.toArray(new Shift[]{});
}
-
+
- /* (non-Javadoc)
- * @see org.eclipse.ui.part.EditorPart#doSave(org.eclipse.core.runtime.IProgressMonitor)
- */
@Override
public void doSave(IProgressMonitor monitor) {
if (getEditorInput() instanceof AlignmentEditorInput) {
}
}
-
+
- /* (non-Javadoc)
- * @see org.eclipse.ui.part.EditorPart#doSaveAs()
- */
@Override
public void doSaveAs() {}
-
+
- /* (non-Javadoc)
- * @see org.eclipse.ui.part.EditorPart#init(org.eclipse.ui.IEditorSite, org.eclipse.ui.IEditorInput)
- */
@Override
public void init(IEditorSite site, IEditorInput input) throws PartInitException {
setSite(site);
setInput(input);
- System.out.println("AlignmentEditor.init(): " + ActionFactory.COPY.getId());
- site.getActionBars().setGlobalActionHandler(ActionFactory.COPY.getId(), new Action(ActionFactory.COPY.getId()) {
- @Override
- public boolean isEnabled() {
- System.out.println("isEnabled()");
- return true;
- }
-
- @Override
- public void run() {
- System.out.println("run");
- super.run();
- }
- });
}
-
+
- /* (non-Javadoc)
- * @see org.eclipse.ui.part.EditorPart#isDirty()
- */
@Override
public boolean isDirty() {
return dirty;
firePropertyChange(IEditorPart.PROP_DIRTY);
}
-
+
- /* (non-Javadoc)
- * @see org.eclipse.ui.part.EditorPart#isSaveAsAllowed()
- */
@Override
public boolean isSaveAsAllowed() {
return false; // "Save as" not allowed.
}
-
+
@Override
public void setFocus() {
- if(conversationHolder!=null){
+ if(conversationHolder != null){
conversationHolder.bind();
}
+ ((AlignmentEditorInput)getEditorInput()).bind();
}
-
- @Override
- public void dispose() {
- ((AlignmentEditorInput)getEditorInput()).dispose();
- }
-
public boolean isInsertMode() {
return getAlignmentsContainer().getEditSettings().isInsert();
}
BGBM BDI Projects / taxeditor.git / commitdiff