+++ /dev/null
-/**
-* Copyright (C) 2018 EDIT
-* European Distributed Institute of Taxonomy
-* http://www.e-taxonomy.eu
-*
-* The contents of this file are subject to the Mozilla Public License Version 1.1
-* See LICENSE.TXT at the top of this package for the full license terms.
-*/
-package eu.etaxonomy.taxeditor.editor.descriptiveDataSet.matrix;
-
-import java.util.Collection;
-import java.util.List;
-import java.util.Set;
-import java.util.UUID;
-import java.util.stream.Collectors;
-
-import org.eclipse.core.runtime.ICoreRunnable;
-import org.eclipse.core.runtime.IProgressMonitor;
-import org.eclipse.core.runtime.SubMonitor;
-import org.eclipse.core.runtime.jobs.IJobChangeEvent;
-import org.eclipse.core.runtime.jobs.Job;
-import org.eclipse.core.runtime.jobs.JobChangeAdapter;
-import org.eclipse.jface.layout.GridDataFactory;
-import org.eclipse.jface.viewers.IStructuredSelection;
-import org.eclipse.jface.window.Window;
-import org.eclipse.jface.wizard.WizardDialog;
-import org.eclipse.swt.SWT;
-import org.eclipse.swt.events.SelectionAdapter;
-import org.eclipse.swt.events.SelectionEvent;
-import org.eclipse.swt.layout.RowLayout;
-import org.eclipse.swt.widgets.Button;
-import org.eclipse.swt.widgets.Composite;
-
-import eu.etaxonomy.cdm.api.application.CdmApplicationState;
-import eu.etaxonomy.cdm.api.service.IDescriptiveDataSetService;
-import eu.etaxonomy.cdm.api.service.ITaxonNodeService;
-import eu.etaxonomy.cdm.api.service.UpdateResult;
-import eu.etaxonomy.cdm.api.service.description.AggregationMode;
-import eu.etaxonomy.cdm.api.service.description.StructuredDescriptionAggregationConfiguration;
-import eu.etaxonomy.cdm.api.service.dto.SpecimenRowWrapperDTO;
-import eu.etaxonomy.cdm.common.monitor.IRemotingProgressMonitor;
-import eu.etaxonomy.cdm.filter.TaxonNodeFilter;
-import eu.etaxonomy.cdm.model.description.DescriptiveDataSet;
-import eu.etaxonomy.cdm.model.taxon.Taxon;
-import eu.etaxonomy.cdm.persistence.dto.DescriptiveDataSetBaseDto;
-import eu.etaxonomy.cdm.persistence.dto.TaxonNodeDto;
-import eu.etaxonomy.cdm.persistence.dto.TermDto;
-import eu.etaxonomy.taxeditor.editor.internal.TaxeditorEditorPlugin;
-import eu.etaxonomy.taxeditor.editor.l10n.Messages;
-import eu.etaxonomy.taxeditor.model.AbstractUtility;
-import eu.etaxonomy.taxeditor.model.MessagingUtils;
-import eu.etaxonomy.taxeditor.operation.IFeedbackGenerator;
-import eu.etaxonomy.taxeditor.store.CdmStore;
-import eu.etaxonomy.taxeditor.store.StoreUtil;
-import eu.etaxonomy.taxeditor.ui.dialog.configurator.StructuredAggregationConfigurationWizard;
-import eu.etaxonomy.taxeditor.ui.dialog.selection.TaxonSelectionDialog;
-
-/**
- * @author pplitzner
- * @since Jul 9, 2018
- */
-public class CharacterMatrixBottomToolbar extends Composite{
-
- private CharacterMatrix matrix;
-
- public CharacterMatrixBottomToolbar(CharacterMatrix matrix, int style) {
- super(matrix, style);
- this.matrix = matrix;
-
- init();
- }
-
- private void init() {
-
- setLayout(new RowLayout());
- GridDataFactory.fillDefaults().grab(true, false).applyTo(this);
-
-// /**
-// * Add description button
-// */
-// Button btnAddDescription = new Button(this, SWT.PUSH);
-// btnAddDescription.setImage(ImageResources.getImage(ImageResources.ADD_ICON_GREEN));
-// btnAddDescription.addSelectionListener(new SelectionAdapter() {
-// @Override
-// public void widgetSelected(SelectionEvent e) {
-// if(StoreUtil.promptCheckIsDirty(matrix.getPart())){
-// return;
-// }
-// SpecimenSelectionDialog dialog = new SpecimenSelectionDialog(matrix.getShell(), matrix, null);
-// if(dialog.open()==Window.OK){
-// Collection<SpecimenNodeWrapper> wrappers = dialog.getSpecimen();
-// if(wrappers.stream().anyMatch(wrapper->wrapper.getTaxonDescriptionUuid()==null)
-// && !MessagingUtils.confirmDialog(
-// "Create Taxon Association",
-// "Some specimens are not linked with taxon via IndividualsAssociation yet.\n"
-// + "Do you want to create this association?")){
-// return;
-// }
-// addRowsToMatrix(wrappers, matrix.getDescriptiveDataSet().getUuid());
-// wrappers.forEach(wrapper->matrix.getSpecimenCache().remove(wrapper));
-// }
-// }
-// });
- /**
- * Remove description button
- */
-// Button btnRemoveDescription = new Button(this, SWT.PUSH);
-// btnRemoveDescription.setImage(ImageResources.getImage(ImageResources.ACTIVE_DELETE_ICON));
-// btnRemoveDescription.addSelectionListener(new SelectionAdapter() {
-// @Override
-// public void widgetSelected(SelectionEvent e) {
-// if(StoreUtil.promptCheckIsDirty(matrix.getPart())){
-// return;
-// }
-// if(!MessagingUtils.confirmDialog(Messages.CharacterMatrixBottomToolbar_CONFIRM_DELETE_TITLE, Messages.CharacterMatrixBottomToolbar_CONFIRM_DELETE_MESSAGE)){
-// return;
-// }
-// int[] fullySelectedRowPositions = matrix.getBodyLayer().getSelectionLayer().getFullySelectedRowPositions();
-// List<RowWrapperDTO> toRemove = new ArrayList<>();
-// for (int i : fullySelectedRowPositions) {
-// Object rowObject = matrix.getBodyDataProvider().getRowObject(i);
-// if(rowObject instanceof RowWrapperDTO){
-// toRemove.add((RowWrapperDTO) rowObject);
-// }
-// }
-// toRemove.forEach(rowToRemove -> {
-// matrix.putDescriptionToDelete(rowToRemove.getDescription().getUuid());
-// matrix.getDescriptions().remove(rowToRemove);
-// matrix.setDirty();
-//// CdmStore.getService(IDescriptiveDataSetService.class).removeDescription(
-//// rowToRemove.getDescription().getUuid(), matrix.getDescriptiveDataSet().getUuid());
-// });
-// }
-// });
- /**
- * Aggregate button
- */
- Button btnAggregate = new Button(this, SWT.PUSH);
- btnAggregate.setText(Messages.CharacterMatrixBottomToolbar_AGGREGATE);
- btnAggregate.addSelectionListener(new SelectionAdapter() {
- @Override
- public void widgetSelected(SelectionEvent e) {
- if(StoreUtil.promptCheckIsDirty(matrix.getPart())){
- return;
- }
- aggregatDescriptiveDataSet(matrix.getDescriptiveDataSet().getUuid());
- }
- });
- /**
- * Key generation button
- */
- Button btnGenerateKey = new Button(this, SWT.PUSH);
- btnGenerateKey.setText("Generate Polytomous Key");
- btnGenerateKey.addSelectionListener(new SelectionAdapter() {
- @Override
- public void widgetSelected(SelectionEvent e) {
- if(StoreUtil.promptCheckIsDirty(matrix.getPart())){
- return;
- }
- Set<TaxonNodeDto> nodeDtos = matrix.getDescriptiveDataSet().getSubTreeFilter();
- TaxonNodeDto parentDto = CdmStore.getService(ITaxonNodeService.class).findCommonParentDto(nodeDtos);
- UUID taxonUuid = parentDto.getTaxonUuid();
- int response = MessagingUtils.confirmDialog(
- "Choose taxonomic scope",
- String.format("The common parent taxon of this dataset is :\n%s\n\n"
- + "Do you want to use this as the taxonomic scope for the polytomous key?"
- , parentDto.getTaxonTitleCache()), "Yes", "Choose different taxon", "Cancel");
- if(response==2){
- return;
- }
- else if(response==1){
- Taxon taxon = TaxonSelectionDialog.selectTaxon(getShell(), null);
- if(taxon==null){
- return;
- }
- taxonUuid = taxon.getUuid();
- }
- generateKey(matrix.getDescriptiveDataSet().getUuid(), taxonUuid);
- }
-
- });
- }
-
- private void aggregatDescriptiveDataSet(UUID descriptiveDataSetUuid){
-
- StructuredDescriptionAggregationConfiguration config = StructuredDescriptionAggregationConfiguration.NewInstance(
- null, null);
- IStructuredSelection sel = matrix.getSelection();
- Object o = sel.getFirstElement();
- TaxonNodeFilter filter = TaxonNodeFilter.NewRankInstance(matrix.getDescriptiveDataSet().getMinRank().getUuid(),
- matrix.getDescriptiveDataSet().getMaxRank().getUuid());
- for (TermDto namedArea : matrix.getDescriptiveDataSet().getGeoFilter()) {
- filter = filter.orArea(namedArea.getUuid());
- }
-// for (TaxonNode taxonNode : matrix.getDescriptiveDataSet().getTaxonSubtreeFilter()) {
-// filter = filter.orSubtree(taxonNode);
-// }
-
- if (o instanceof TaxonNodeDto){
- filter = filter.orSubtree(CdmStore.getService(ITaxonNodeService.class).load(((TaxonNodeDto)o).getUuid()));
- }else{
- for (TaxonNodeDto taxonNode : matrix.getDescriptiveDataSet().getSubTreeFilter()) {
- filter = filter.orSubtree(taxonNode.getUuid());
- }
- }
- config.setTaxonNodeFilter(filter);
-
- config.setDatasetUuid(matrix.getDescriptiveDataSet().getUuid());
- config.setAggregationMode(AggregationMode.byWithinTaxonAndToParent());
- config.setAdaptBatchSize(false);
- StructuredAggregationConfigurationWizard aggregationWizard = new StructuredAggregationConfigurationWizard(config, this.matrix.getDescriptiveDataSet(), null);
- WizardDialog dialog = new WizardDialog(AbstractUtility.getShell(),
- aggregationWizard);
-
- int open = dialog.open();
- if (open != Window.OK){
- return;
- }
- UUID monitorUuid = CdmApplicationState.getLongRunningTasksService().invoke(config);
-
- String jobLabel = "Aggregate Descriptive Dataset";
- Job job = Job.create(jobLabel, (ICoreRunnable) monitor -> {
- SubMonitor subMonitor = SubMonitor.convert(monitor);
- subMonitor.beginTask(jobLabel, IProgressMonitor.UNKNOWN);
- IRemotingProgressMonitor remotingMonitor;
- try {
- remotingMonitor = CdmStore.getProgressMonitorClientManager()
- .pollMonitor(jobLabel,
- monitorUuid,
- 50,
- null,
- (List<IFeedbackGenerator>)null,
- subMonitor);
- Object resultObject = remotingMonitor.getResult();
- if(resultObject instanceof Exception){
- MessagingUtils.errorDialog("Aggregation failed", this, "Aggregation was not successfull", TaxeditorEditorPlugin.PLUGIN_ID, (Exception)resultObject, true, true);
- }
- else if(resultObject instanceof UpdateResult){
- DescriptiveDataSet dataSet = (DescriptiveDataSet) ((UpdateResult) resultObject).getCdmEntity();
-// dataSet = matrix.getCdmEntitiySession().load(dataSet, true);
-
- DescriptiveDataSetBaseDto dto = CdmStore.getService(IDescriptiveDataSetService.class).getDescriptiveDataSetDtoByUuid(dataSet.getUuid());
- // update local dataset
- matrix.setDescriptiveDataSet(dto);
- matrix.loadDescriptions(false, false);
- }
- } catch (InterruptedException e) {
- return;
- }
- monitor.done();
- });
- job.addJobChangeListener(new JobChangeAdapter(){
- @Override
- public void done(IJobChangeEvent event) {
- CharacterMatrixBottomToolbar.this.getDisplay().asyncExec(()->{
- matrix.redraw();
- });
- }
- });
- job.schedule();
- }
-
- private void addRowsToMatrix(Collection<SpecimenRowWrapperDTO> wrappers, UUID descriptiveDataSetUuid){
- UUID monitorUuid = CdmApplicationState.getLongRunningTasksService().addRowWrapperToDataset(wrappers, descriptiveDataSetUuid);
-
- String jobLabel = "Add specimens to matrix";
- Job job = Job.create(jobLabel, (ICoreRunnable) monitor -> {
- SubMonitor subMonitor = SubMonitor.convert(monitor);
- subMonitor.beginTask(jobLabel, IProgressMonitor.UNKNOWN);
- IRemotingProgressMonitor remotingMonitor;
- try {
- remotingMonitor = CdmStore.getProgressMonitorClientManager()
- .pollMonitor(jobLabel,
- monitorUuid,
- 50,
- null,
- (List)null,
- subMonitor);
- Object resultObject = remotingMonitor.getResult();
- if(resultObject instanceof Exception){
- MessagingUtils.errorDialog("Adding specimens failed", this, "Adding specimens was not successfull", TaxeditorEditorPlugin.PLUGIN_ID, (Exception)resultObject, true, true);
- }
- else if(resultObject instanceof UpdateResult){
- UpdateResult result = (UpdateResult)resultObject;
- if(!result.getExceptions().isEmpty()){
- MessagingUtils.warningDialog(Messages.CharacterMatrixBottomToolbar_ERROR_ROW_CREATION_TITLE, this,
- String.format(Messages.CharacterMatrixBottomToolbar_ERROR_ROW_CREATION_MESSAGE, result.getExceptions()
- .stream().map(ex->ex.toString())
- .collect(Collectors.joining("\n"))));
- }
- DescriptiveDataSet dataSet = (DescriptiveDataSet) result.getCdmEntity();
-// dataSet = matrix.getCdmEntitiySession().load(dataSet, true);
- // update local dataset
- DescriptiveDataSetBaseDto dto = CdmStore.getService(IDescriptiveDataSetService.class).getDescriptiveDataSetDtoByUuid(dataSet.getUuid());
- // update local dataset
- matrix.setDescriptiveDataSet(dto);
-// matrix.setDescriptiveDataSet(dataSet);
- matrix.loadDescriptions(false, false);
- }
- } catch (InterruptedException e) {
- return;
- }
- monitor.done();
- });
- job.addJobChangeListener(new JobChangeAdapter(){
- @Override
- public void done(IJobChangeEvent event) {
- CharacterMatrixBottomToolbar.this.getDisplay().asyncExec(()->{
- matrix.redraw();
- });
- }
- });
- job.schedule();
- }
-
- private void generateKey(UUID datasetUuid, UUID taxonUuid) {
-
- UUID monitorUuid = CdmApplicationState.getLongRunningTasksService().generatePolytomousKey(datasetUuid, taxonUuid);
-
- String jobLabel = "Generate polytomous key";
- Job job = Job.create(jobLabel, (ICoreRunnable) monitor -> {
- SubMonitor subMonitor = SubMonitor.convert(monitor);
- subMonitor.beginTask(jobLabel, IProgressMonitor.UNKNOWN);
- IRemotingProgressMonitor remotingMonitor;
- try {
- remotingMonitor = CdmStore.getProgressMonitorClientManager()
- .pollMonitor(jobLabel,
- monitorUuid,
- 50,
- null,
- (List)null,
- subMonitor);
- Object resultObject = remotingMonitor.getResult();
- if(resultObject instanceof Exception){
- MessagingUtils.errorDialog("Key generation failed", this, "Generating the polytomous key was not successfull", TaxeditorEditorPlugin.PLUGIN_ID, (Exception)resultObject, true, true);
- }
- } catch (InterruptedException e) {
- return;
- }
- monitor.done();
- });
- job.schedule();
-
- }
-
-}
BGBM BDI Projects / taxeditor.git / commitdiff