<tags>View</tags>
<tags>categoryTag:Sample Category</tags>
<handlers xmi:id="_E5l4wDVqEee_b7RlBzTDRw" elementId="eu.etaxonomy.taxeditor.editor.view.derivate.handler.CreateFieldUnitHandler" contributionURI="bundleclass://eu.etaxonomy.taxeditor.editor/eu.etaxonomy.taxeditor.editor.view.derivate.handler.CreateFieldUnitHandler" command="_BjF3ADVqEee_b7RlBzTDRw"/>
- <handlers xmi:id="_ha1I4DmBEeeOos_QXKSXcA" elementId="eu.etaxonomy.taxeditor.editor.handler.0" contributionURI="bundleclass://eu.etaxonomy.taxeditor.editor/eu.etaxonomy.taxeditor.editor.view.derivate.handler.AddSpecimenHandler" command="_qqMbcDmBEeeOos_QXKSXcA"/>
+ <handlers xmi:id="_ha1I4DmBEeeOos_QXKSXcA" elementId="eu.etaxonomy.taxeditor.editor/eu.etaxonomy.taxeditor.editor.view.derivate.handler.AddSpecimenHandler" contributionURI="bundleclass://eu.etaxonomy.taxeditor.editor/eu.etaxonomy.taxeditor.editor.view.derivate.handler.AddSpecimenHandler" command="_qqMbcDmBEeeOos_QXKSXcA"/>
+ <handlers xmi:id="_FOiO0DocEeecLdI14WMq7w" elementId="eu.etaxonomy.taxeditor.editor.view.derivate.handler.AddTissueSampleHandler" contributionURI="bundleclass://eu.etaxonomy.taxeditor.editor/eu.etaxonomy.taxeditor.editor.view.derivate.handler.AddTissueSampleHandler" command="_I2LD4DocEeecLdI14WMq7w"/>
<menus xsi:type="menu:PopupMenu" xmi:id="_CYXZ0DQEEeeTNOFVGI4q2w" elementId="eu.etaxonomy.taxeditor.editor.popupmenu.specimeneditor">
<children xsi:type="menu:HandledMenuItem" xmi:id="_um1oYDVpEee_b7RlBzTDRw" elementId="eu.etaxonomy.taxeditor.editor.handledmenuitem.create_field_unit_for_taxon" label="Create Field Unit For ..." command="_BjF3ADVqEee_b7RlBzTDRw"/>
<children xsi:type="menu:HandledMenuItem" xmi:id="_5GMRcDWQEeeNfoZ3nN0K8Q" elementId="eu.etaxonomy.taxeditor.editor.handledmenuitem.createfieldunit" label="Create Field Unit" command="_BjF3ADVqEee_b7RlBzTDRw"/>
<children xsi:type="menu:Menu" xmi:id="_cdjzEDmAEeeOos_QXKSXcA" elementId="eu.etaxonomy.taxeditor.editor.menu.add" label="Add...">
<children xsi:type="menu:HandledMenuItem" xmi:id="_R27WIDmBEeeOos_QXKSXcA" elementId="eu.etaxonomy.taxeditor.editor.handledmenuitem.specimen" label="Specimen" command="_qqMbcDmBEeeOos_QXKSXcA"/>
- <children xsi:type="menu:HandledMenuItem" xmi:id="_TKz_4DmBEeeOos_QXKSXcA" elementId="eu.etaxonomy.taxeditor.editor.handledmenuitem.tissuesample" label="Tissue Sample"/>
+ <children xsi:type="menu:HandledMenuItem" xmi:id="_TKz_4DmBEeeOos_QXKSXcA" elementId="eu.etaxonomy.taxeditor.editor.handledmenuitem.tissuesample" label="Tissue Sample" command="_I2LD4DocEeecLdI14WMq7w"/>
<children xsi:type="menu:HandledMenuItem" xmi:id="_UukRoDmBEeeOos_QXKSXcA" elementId="eu.etaxonomy.taxeditor.editor.handledmenuitem.dnasample" label="DNA Sample"/>
<children xsi:type="menu:HandledMenuItem" xmi:id="_WwK9ADmBEeeOos_QXKSXcA" elementId="eu.etaxonomy.taxeditor.editor.handledmenuitem.mediaspecimen" label="Media Specimen"/>
<children xsi:type="menu:HandledMenuItem" xmi:id="_YYSxYDmBEeeOos_QXKSXcA" elementId="eu.etaxonomy.taxeditor.editor.handledmenuitem.consensussequence" label="Consensus Sequence"/>
<fragments xsi:type="fragment:StringModelFragment" xmi:id="__mwtMDVpEee_b7RlBzTDRw" featurename="commands" parentElementId="xpath:/">
<elements xsi:type="commands:Command" xmi:id="_BjF3ADVqEee_b7RlBzTDRw" elementId="eu.etaxonomy.taxeditor.editor.command.specimeneditor.create_field_unit" commandName="Create Field Unit"/>
<elements xsi:type="commands:Command" xmi:id="_qqMbcDmBEeeOos_QXKSXcA" elementId="eu.etaxonomy.taxeditor.editor.command.add_derivate.add_specimen" commandName="Add Specimen"/>
+ <elements xsi:type="commands:Command" xmi:id="_I2LD4DocEeecLdI14WMq7w" elementId="eu.etaxonomy.taxeditor.editor.command.add_derivate.add_tissue_sample" commandName="Add Tissue Sample"/>
</fragments>
</fragment:ModelFragments>
--- /dev/null
+
+package eu.etaxonomy.taxeditor.editor.view.derivate.handler;
+
+import javax.inject.Named;
+
+import org.eclipse.e4.core.di.annotations.CanExecute;
+import org.eclipse.e4.core.di.annotations.Execute;
+import org.eclipse.e4.ui.model.application.ui.basic.MPart;
+import org.eclipse.e4.ui.model.application.ui.menu.MHandledMenuItem;
+import org.eclipse.e4.ui.services.IServiceConstants;
+import org.eclipse.jface.viewers.TreeNode;
+
+import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeCacheStrategy;
+import eu.etaxonomy.cdm.api.service.IOccurrenceService;
+import eu.etaxonomy.cdm.model.occurrence.DerivationEvent;
+import eu.etaxonomy.cdm.model.occurrence.DerivationEventType;
+import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
+import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
+import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
+import eu.etaxonomy.taxeditor.editor.view.derivate.DerivateView;
+import eu.etaxonomy.taxeditor.model.MessagingUtils;
+import eu.etaxonomy.taxeditor.store.CdmStore;
+
+public abstract class AbstractAddDerivateHandler {
+
+ @Execute
+ public void execute(@Named(IServiceConstants.ACTIVE_SELECTION) TreeNode node, @Named(IServiceConstants.ACTIVE_PART) MPart part) {
+ DerivateView derivateView = (DerivateView) part.getObject();
+
+ checkDirtyState(derivateView);
+
+ Object selectedDerivative = node.getValue();
+ if(isAllowed(selectedDerivative)){
+ Object createdElement = addElement(selectedDerivative);
+ refreshView(derivateView, createdElement);
+ }
+ }
+
+ @CanExecute
+ public boolean canExecute(@Named(IServiceConstants.ACTIVE_SELECTION) TreeNode node, MHandledMenuItem item) {
+ boolean canExecute = false;
+
+ Object derivate = node.getValue();
+ canExecute = isAllowed(derivate);
+ item.setVisible(canExecute);
+ return canExecute;
+ }
+
+ private void refreshView(DerivateView derivateView, Object createdElement) {
+ if(derivateView!=null){
+ derivateView.getConversationHolder().commit();
+ derivateView.refreshTree(createdElement);
+ }
+ }
+
+ private void checkDirtyState(DerivateView derivateView){
+ if(derivateView!=null){
+ if(derivateView.isDirty()){
+ MessagingUtils.warningDialog(DerivateView.VIEW_HAS_UNSAVED_CHANGES, this, DerivateView.YOU_NEED_TO_SAVE_BEFORE_PERFORMING_THIS_ACTION);
+ return;
+ }
+ }
+ }
+
+ private Object addElement(Object selectedDerivative){
+ Object createdElement = null;
+ SpecimenOrObservationBase<?> specimenOrObservationBase = (SpecimenOrObservationBase<?>) selectedDerivative;
+ DerivedUnit derivedUnit = DerivedUnit.NewInstance(getSpecimenType());
+ specimenOrObservationBase.addDerivationEvent(DerivationEvent.NewSimpleInstance(specimenOrObservationBase, derivedUnit, getDerivationeType()));
+ derivedUnit.setCacheStrategy(new DerivedUnitFacadeCacheStrategy());
+ derivedUnit.getTitleCache(); //update title cache
+ createdElement = derivedUnit;
+ CdmStore.getService(IOccurrenceService.class).merge((SpecimenOrObservationBase<?>) selectedDerivative, true);
+ return createdElement;
+ }
+
+ protected abstract SpecimenOrObservationType getSpecimenType();
+
+ protected abstract DerivationEventType getDerivationeType();
+
+ protected abstract boolean isAllowed(Object derivative);
+
+}
\ No newline at end of file
package eu.etaxonomy.taxeditor.editor.view.derivate.handler;
-import javax.inject.Named;
-
-import org.eclipse.e4.core.di.annotations.CanExecute;
-import org.eclipse.e4.core.di.annotations.Execute;
-import org.eclipse.e4.ui.model.application.ui.basic.MPart;
-import org.eclipse.e4.ui.model.application.ui.menu.MHandledMenuItem;
-import org.eclipse.e4.ui.services.IServiceConstants;
-import org.eclipse.jface.viewers.TreeNode;
-
-import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeCacheStrategy;
-import eu.etaxonomy.cdm.api.service.IOccurrenceService;
-import eu.etaxonomy.cdm.model.occurrence.DerivationEvent;
import eu.etaxonomy.cdm.model.occurrence.DerivationEventType;
-import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
-import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
-import eu.etaxonomy.taxeditor.editor.view.derivate.DerivateView;
-import eu.etaxonomy.taxeditor.model.MessagingUtils;
-import eu.etaxonomy.taxeditor.store.CdmStore;
-
-public class AddSpecimenHandler {
- @Execute
- public void execute(@Named(IServiceConstants.ACTIVE_SELECTION) TreeNode node, @Named(IServiceConstants.ACTIVE_PART) MPart part) {
- DerivateView derivateView = (DerivateView) part.getObject();
- if(derivateView!=null){
- if(derivateView.isDirty()){
- MessagingUtils.warningDialog(DerivateView.VIEW_HAS_UNSAVED_CHANGES, this, DerivateView.YOU_NEED_TO_SAVE_BEFORE_PERFORMING_THIS_ACTION);
- return;
- }
- }
- Object createdElement = null;
- Object selectedDerivate = node.getValue();
- if(selectedDerivate instanceof FieldUnit){
- FieldUnit fieldUnit = (FieldUnit)selectedDerivate;
- DerivedUnit derivedUnit = DerivedUnit.NewInstance(SpecimenOrObservationType.PreservedSpecimen);
- fieldUnit.addDerivationEvent(DerivationEvent.NewSimpleInstance(fieldUnit, derivedUnit, DerivationEventType.GATHERING_IN_SITU()));
- derivedUnit.setCacheStrategy(new DerivedUnitFacadeCacheStrategy());
- derivedUnit.getTitleCache(); //update title cache
- createdElement = derivedUnit;
- CdmStore.getService(IOccurrenceService.class).merge((SpecimenOrObservationBase) selectedDerivate, true);
- }
+public class AddSpecimenHandler extends AbstractAddDerivateHandler{
- //refresh view
- if(derivateView!=null){
- derivateView.getConversationHolder().commit();
- derivateView.refreshTree(createdElement);
+ @Override
+ protected boolean isAllowed(Object derivative) {
+ if(derivative instanceof FieldUnit){
+ return true;
}
- }
-
-
- @CanExecute
- public boolean canExecute(@Named(IServiceConstants.ACTIVE_SELECTION) TreeNode node, MHandledMenuItem item) {
- boolean canExecute = false;
-
- Object derivate = node.getValue();
- if(derivate instanceof FieldUnit){
- canExecute = true;
- }
- item.setVisible(canExecute);
- return canExecute;
- }
+ return false;
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ protected SpecimenOrObservationType getSpecimenType() {
+ return SpecimenOrObservationType.PreservedSpecimen;
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ protected DerivationEventType getDerivationeType() {
+ return DerivationEventType.GATHERING_IN_SITU();
+ }
}
\ No newline at end of file
--- /dev/null
+
+package eu.etaxonomy.taxeditor.editor.view.derivate.handler;
+
+import eu.etaxonomy.cdm.model.occurrence.DerivationEventType;
+import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
+import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
+import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
+
+public class AddTissueSampleHandler extends AbstractAddDerivateHandler{
+
+ @Override
+ protected boolean isAllowed(Object derivative) {
+ if (derivative instanceof FieldUnit || (derivative instanceof DerivedUnit
+ && ((DerivedUnit) derivative).getRecordBasis().equals(SpecimenOrObservationType.PreservedSpecimen))) {
+ return true;
+ }
+ return false;
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ protected SpecimenOrObservationType getSpecimenType() {
+ return SpecimenOrObservationType.TissueSample;
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ protected DerivationEventType getDerivationeType() {
+ return DerivationEventType.PREPARATION();
+ }
+
+}
\ No newline at end of file
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<?pde version="3.8"?><target includeMode="feature" name="Eclipse Indigo Target" sequenceNumber="36">
+<?pde version="3.8"?><target includeMode="feature" name="Eclipse Indigo Target" sequenceNumber="37">
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<unit id="org.eclipse.emf.feature.group" version="2.12.0.v20160526-0356"/>
<repository location="http://download.eclipse.org/releases/neon"/>
</location>
+<location includeAllPlatforms="false" includeConfigurePhase="true" includeMode="planner" includeSource="true" type="InstallableUnit">
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+<unit id="org.eclipse.e4.tools.bundle.spy.feature.feature.group" version="0.1.0.v20170110-2157"/>
+<unit id="org.eclipse.e4.tools.context.spy.feature.feature.group" version="0.17.0.v20170110-2157"/>
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+<repository location="http://download.eclipse.org/e4/snapshots/org.eclipse.e4.tools/latest"/>
+</location>
</locations>
</target>
BGBM BDI Projects / taxeditor.git / commitdiff