X-Git-Url: https://dev.e-taxonomy.eu/gitweb/taxeditor.git/blobdiff_plain/ad1fb31692d3ca3635aaed21079c4479b32a6270..67de2353d55ce0c8a93ae6caa019a0299985baf7:/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientTaxonService.java diff --git a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientTaxonService.java b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientTaxonService.java index 96b5f6d45..407234ba7 100644 --- a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientTaxonService.java +++ b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientTaxonService.java @@ -1,12 +1,12 @@ // $Id$ /** -* Copyright (C) 2013 EDIT -* European Distributed Institute of Taxonomy -* http://www.e-taxonomy.eu -* -* The contents of this file are subject to the Mozilla Public License Version 1.1 -* See LICENSE.TXT at the top of this package for the full license terms. -*/ + * Copyright (C) 2013 EDIT + * European Distributed Institute of Taxonomy + * http://www.e-taxonomy.eu + * + * The contents of this file are subject to the Mozilla Public License Version 1.1 + * See LICENSE.TXT at the top of this package for the full license terms. + */ package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices; import java.io.IOException; @@ -19,13 +19,15 @@ import java.util.UUID; import org.apache.lucene.index.CorruptIndexException; import org.apache.lucene.queryParser.ParseException; -import org.hibernate.LockMode; +import org.hibernate.LockOptions; import org.hibernate.Session; import org.hibernate.criterion.Criterion; import org.hibernate.envers.query.criteria.AuditCriterion; +import eu.etaxonomy.cdm.api.service.DeleteResult; import eu.etaxonomy.cdm.api.service.ITaxonService; import eu.etaxonomy.cdm.api.service.TaxaAndNamesSearchMode; +import eu.etaxonomy.cdm.api.service.UpdateResult; import eu.etaxonomy.cdm.api.service.config.DeleteConfiguratorBase; import eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator; import eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator; @@ -33,6 +35,7 @@ import eu.etaxonomy.cdm.api.service.config.IncludedTaxonConfiguration; import eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator; import eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator; import eu.etaxonomy.cdm.api.service.config.TaxonDeletionConfigurator; +import eu.etaxonomy.cdm.api.service.dto.FindByIdentifierDTO; import eu.etaxonomy.cdm.api.service.dto.IncludedTaxaDTO; import eu.etaxonomy.cdm.api.service.exception.DataChangeNoRollbackException; import eu.etaxonomy.cdm.api.service.exception.HomotypicalGroupChangeException; @@ -42,6 +45,7 @@ import eu.etaxonomy.cdm.api.service.search.SearchResult; import eu.etaxonomy.cdm.api.service.util.TaxonRelationshipEdge; import eu.etaxonomy.cdm.common.monitor.IProgressMonitor; import eu.etaxonomy.cdm.model.common.Annotation; +import eu.etaxonomy.cdm.model.common.DefinedTerm; import eu.etaxonomy.cdm.model.common.ISourceable; import eu.etaxonomy.cdm.model.common.IdentifiableEntity; import eu.etaxonomy.cdm.model.common.IdentifiableSource; @@ -52,10 +56,9 @@ import eu.etaxonomy.cdm.model.common.MarkerType; import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary; import eu.etaxonomy.cdm.model.common.RelationshipBase; import eu.etaxonomy.cdm.model.common.RelationshipBase.Direction; -import eu.etaxonomy.cdm.model.common.UuidAndTitleCache; import eu.etaxonomy.cdm.model.description.DescriptionElementBase; import eu.etaxonomy.cdm.model.description.Feature; -import eu.etaxonomy.cdm.model.description.PresenceAbsenceTermBase; +import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm; import eu.etaxonomy.cdm.model.location.NamedArea; import eu.etaxonomy.cdm.model.media.Media; import eu.etaxonomy.cdm.model.media.MediaRepresentation; @@ -70,11 +73,13 @@ import eu.etaxonomy.cdm.model.taxon.SynonymRelationship; import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType; import eu.etaxonomy.cdm.model.taxon.Taxon; import eu.etaxonomy.cdm.model.taxon.TaxonBase; +import eu.etaxonomy.cdm.model.taxon.TaxonNode; import eu.etaxonomy.cdm.model.taxon.TaxonRelationship; import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType; import eu.etaxonomy.cdm.model.view.AuditEvent; import eu.etaxonomy.cdm.model.view.AuditEventRecord; import eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort; +import eu.etaxonomy.cdm.persistence.dto.UuidAndTitleCache; import eu.etaxonomy.cdm.persistence.fetch.CdmFetch; import eu.etaxonomy.cdm.persistence.query.Grouping; import eu.etaxonomy.cdm.persistence.query.MatchMode; @@ -90,13 +95,13 @@ import eu.etaxonomy.cdm.strategy.merge.IMergeStrategy; */ public class TransientTaxonService implements ITaxonService { - private final ITaxonService defaultTaxonService; + private final ITaxonService defaultService; /** * @param defaultTaxonService */ public TransientTaxonService(ITaxonService defaultTaxonService) { - this.defaultTaxonService = defaultTaxonService; + this.defaultService = defaultTaxonService; } /** @@ -110,7 +115,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager> pageAuditEvents(TaxonBase t, Integer pageSize, Integer pageNumber, AuditEventSort sort, List propertyPaths) { - return defaultTaxonService.pageAuditEvents(t, pageSize, pageNumber, sort, propertyPaths); + return defaultService.pageAuditEvents(t, pageSize, pageNumber, sort, propertyPaths); } /** @@ -125,7 +130,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager getAnnotations(TaxonBase annotatedObj, MarkerType status, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) { - return defaultTaxonService.getAnnotations(annotatedObj, status, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.getAnnotations(annotatedObj, status, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -134,7 +139,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public void clear() { - defaultTaxonService.clear(); + defaultService.clear(); } /** @@ -143,8 +148,8 @@ public class TransientTaxonService implements ITaxonService { * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode) */ @Override - public void lock(TaxonBase t, LockMode lockMode) { - defaultTaxonService.lock(t, lockMode); + public void lock(TaxonBase t, LockOptions lockOptions) { + defaultService.lock(t, lockOptions); } /** @@ -154,8 +159,8 @@ public class TransientTaxonService implements ITaxonService { * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List) */ @Override - public void refresh(TaxonBase t, LockMode lockMode, List propertyPaths) { - defaultTaxonService.refresh(t, lockMode, propertyPaths); + public void refresh(TaxonBase t, LockOptions lockOptions, List propertyPaths) { + defaultService.refresh(t, lockOptions, propertyPaths); } /** @@ -164,7 +169,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public void updateTitleCache() { - defaultTaxonService.updateTitleCache(); + defaultService.updateTitleCache(); } /** @@ -174,7 +179,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public AuditEventRecord getNextAuditEvent(TaxonBase t) { - return defaultTaxonService.getNextAuditEvent(t); + return defaultService.getNextAuditEvent(t); } /** @@ -189,7 +194,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager getMarkers(TaxonBase annotatableEntity, Boolean technical, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) { - return defaultTaxonService.getMarkers(annotatableEntity, technical, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.getMarkers(annotatableEntity, technical, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -201,7 +206,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public void updateTitleCache(Class clazz, Integer stepSize, IIdentifiableEntityCacheStrategy cacheStrategy, IProgressMonitor monitor) { - defaultTaxonService.updateTitleCache(clazz, stepSize, cacheStrategy, monitor); + defaultService.updateTitleCache(clazz, stepSize, cacheStrategy, monitor); } /** @@ -211,7 +216,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public AuditEventRecord getPreviousAuditEvent(TaxonBase t) { - return defaultTaxonService.getPreviousAuditEvent(t); + return defaultService.getPreviousAuditEvent(t); } /** @@ -221,7 +226,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public int count(Class clazz) { - return defaultTaxonService.count(clazz); + return defaultService.count(clazz); } /** @@ -238,7 +243,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager> pageAuditEvents(Class clazz, AuditEvent from, AuditEvent to, List criteria, Integer pageSize, Integer pageValue, AuditEventSort sort, List propertyPaths) { - return defaultTaxonService.pageAuditEvents(clazz, from, to, criteria, pageSize, pageValue, sort, propertyPaths); + return defaultService.pageAuditEvents(clazz, from, to, criteria, pageSize, pageValue, sort, propertyPaths); } /** @@ -248,7 +253,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public TaxonBase find(LSID lsid) { - return defaultTaxonService.find(lsid); + return defaultService.find(lsid); } /** @@ -257,8 +262,8 @@ public class TransientTaxonService implements ITaxonService { * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase) */ @Override - public String delete(TaxonBase persistentObject) { - return defaultTaxonService.delete(persistentObject); + public DeleteResult delete(TaxonBase persistentObject) { + return defaultService.delete(persistentObject); } /** @@ -272,7 +277,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List groupMarkers(Class clazz, Boolean technical, Integer pageSize, Integer pageNumber, List propertyPaths) { - return defaultTaxonService.groupMarkers(clazz, technical, pageSize, pageNumber, propertyPaths); + return defaultService.groupMarkers(clazz, technical, pageSize, pageNumber, propertyPaths); } /** @@ -282,7 +287,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public boolean exists(UUID uuid) { - return defaultTaxonService.exists(uuid); + return defaultService.exists(uuid); } @@ -294,7 +299,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public TaxonBase replace(TaxonBase x, TaxonBase y) { - return defaultTaxonService.replace(x, y); + return defaultService.replace(x, y); } /** @@ -304,7 +309,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List find(Set uuidSet) { - return defaultTaxonService.find(uuidSet); + return defaultService.find(uuidSet); } /** @@ -317,7 +322,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager getSources(TaxonBase t, Integer pageSize, Integer pageNumber, List propertyPaths) { - return defaultTaxonService.getSources(t, pageSize, pageNumber, propertyPaths); + return defaultService.getSources(t, pageSize, pageNumber, propertyPaths); } /** @@ -331,7 +336,7 @@ public class TransientTaxonService implements ITaxonService { @Deprecated @Override public List getRootTaxa(Reference sec, CdmFetch cdmFetch, boolean onlyWithChildren) { - return defaultTaxonService.getRootTaxa(sec, cdmFetch, onlyWithChildren); + return defaultService.getRootTaxa(sec, cdmFetch, onlyWithChildren); } /** @@ -341,7 +346,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public TaxonBase find(UUID uuid) { - return defaultTaxonService.find(uuid); + return defaultService.find(uuid); } /** @@ -357,7 +362,7 @@ public class TransientTaxonService implements ITaxonService { @Deprecated @Override public List getRootTaxa(Rank rank, Reference sec, boolean onlyWithChildren, boolean withMisapplications, List propertyPaths) { - return defaultTaxonService.getRootTaxa(rank, sec, onlyWithChildren, withMisapplications, propertyPaths); + return defaultService.getRootTaxa(rank, sec, onlyWithChildren, withMisapplications, propertyPaths); } /** @@ -367,7 +372,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public TaxonBase find(int id) { - return defaultTaxonService.find(id); + return defaultService.find(id); } /** @@ -380,7 +385,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager getRights(TaxonBase t, Integer pageSize, Integer pageNumber, List propertyPaths) { - return defaultTaxonService.getRights(t, pageSize, pageNumber, propertyPaths); + return defaultService.getRights(t, pageSize, pageNumber, propertyPaths); } /** @@ -391,7 +396,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public int countMarkers(Class clazz, Boolean technical) { - return defaultTaxonService.countMarkers(clazz, technical); + return defaultService.countMarkers(clazz, technical); } /** @@ -401,7 +406,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List findById(Set idSet) { - return defaultTaxonService.findById(idSet); + return defaultService.findById(idSet); } /** @@ -413,7 +418,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public ISourceable getSourcedObjectByIdInSource(Class clazz, String idInSource, String idNamespace) { - return defaultTaxonService.getSourcedObjectByIdInSource(clazz, idInSource, idNamespace); + return defaultService.getSourcedObjectByIdInSource(clazz, idInSource, idNamespace); } /** @@ -422,7 +427,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Session getSession() { - return defaultTaxonService.getSession(); + return defaultService.getSession(); } /** @@ -431,7 +436,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List> getUuidAndTitleCache() { - return defaultTaxonService.getUuidAndTitleCache(); + return defaultService.getUuidAndTitleCache(); } /** @@ -445,7 +450,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List group(Class clazz, Integer limit, Integer start, List groups, List propertyPaths) { - return defaultTaxonService.group(clazz, limit, start, groups, propertyPaths); + return defaultService.group(clazz, limit, start, groups, propertyPaths); } /** @@ -456,7 +461,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List getAllRelationships(int limit, int start) { - return defaultTaxonService.getAllRelationships(limit, start); + return defaultService.getAllRelationships(limit, start); } /** @@ -473,7 +478,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager findByTitle(Class clazz, String queryString, MatchMode matchmode, List criteria, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) { - return defaultTaxonService.findByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.findByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -484,7 +489,7 @@ public class TransientTaxonService implements ITaxonService { @Deprecated @Override public OrderedTermVocabulary getTaxonRelationshipTypeVocabulary() { - return defaultTaxonService.getTaxonRelationshipTypeVocabulary(); + return defaultService.getTaxonRelationshipTypeVocabulary(); } /** @@ -495,17 +500,17 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List searchTaxaByName(String name, Reference sec) { - return defaultTaxonService.searchTaxaByName(name, sec); + return defaultService.searchTaxaByName(name, sec); } + /** - * @param synonym - * @param acceptedTaxon - * @see eu.etaxonomy.cdm.api.service.ITaxonService#swapSynonymAndAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon) + * {@inheritDoc} */ @Override - public void swapSynonymAndAcceptedTaxon(Synonym synonym, Taxon acceptedTaxon) { - defaultTaxonService.swapSynonymAndAcceptedTaxon(synonym, acceptedTaxon); + public UpdateResult swapSynonymAndAcceptedTaxon(Synonym arg0, Taxon arg1) { + return defaultService.swapSynonymAndAcceptedTaxon(arg0, arg1); + } /** @@ -519,7 +524,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List list(Class type, Integer limit, Integer start, List orderHints, List propertyPaths) { - return defaultTaxonService.list(type, limit, start, orderHints, propertyPaths); + return defaultService.list(type, limit, start, orderHints, propertyPaths); } /** @@ -529,7 +534,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager findByTitle(IIdentifiableEntityServiceConfigurator configurator) { - return defaultTaxonService.findByTitle(configurator); + return defaultService.findByTitle(configurator); } /** @@ -545,7 +550,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Taxon changeSynonymToAcceptedTaxon(Synonym synonym, Taxon acceptedTaxon, boolean deleteSynonym, boolean copyCitationInfo, Reference citation, String microCitation) throws HomotypicalGroupChangeException { - return defaultTaxonService.changeSynonymToAcceptedTaxon(synonym, acceptedTaxon, deleteSynonym, copyCitationInfo, citation, microCitation); + return defaultService.changeSynonymToAcceptedTaxon(synonym, acceptedTaxon, deleteSynonym, copyCitationInfo, citation, microCitation); } /** @@ -558,7 +563,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Integer countByTitle(Class clazz, String queryString, MatchMode matchmode, List criteria) { - return defaultTaxonService.countByTitle(clazz, queryString, matchmode, criteria); + return defaultService.countByTitle(clazz, queryString, matchmode, criteria); } /** @@ -568,7 +573,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public TaxonBase load(UUID uuid) { - return defaultTaxonService.load(uuid); + return defaultService.load(uuid); } /** @@ -579,7 +584,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public TaxonBase load(UUID uuid, List propertyPaths) { - return defaultTaxonService.load(uuid, propertyPaths); + return defaultService.load(uuid, propertyPaths); } /** @@ -589,7 +594,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Integer countByTitle(IIdentifiableEntityServiceConfigurator configurator) { - return defaultTaxonService.countByTitle(configurator); + return defaultService.countByTitle(configurator); } /** @@ -599,7 +604,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public TaxonBase merge(TaxonBase transientObject) { - return defaultTaxonService.merge(transientObject); + return defaultService.merge(transientObject); } /** @@ -616,7 +621,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List listByTitle(Class clazz, String queryString, MatchMode matchmode, List criteria, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) { - return defaultTaxonService.listByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.listByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -630,7 +635,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager page(Class type, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) { - return defaultTaxonService.page(type, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.page(type, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -640,7 +645,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public UUID refresh(TaxonBase persistentObject) { - return defaultTaxonService.refresh(persistentObject); + return defaultService.refresh(persistentObject); } /** @@ -654,7 +659,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Taxon changeSynonymToRelatedTaxon(Synonym synonym, Taxon toTaxon, TaxonRelationshipType taxonRelationshipType, Reference reference, String microReference) { - return defaultTaxonService.changeSynonymToRelatedTaxon(synonym, toTaxon, taxonRelationshipType, reference, microReference); + return defaultService.changeSynonymToRelatedTaxon(synonym, toTaxon, taxonRelationshipType, reference, microReference); } /** @@ -671,7 +676,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List listByReferenceTitle(Class clazz, String queryString, MatchMode matchmode, List criteria, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) { - return defaultTaxonService.listByReferenceTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.listByReferenceTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -683,7 +688,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List rows(String tableName, int limit, int start) { - return defaultTaxonService.rows(tableName, limit, start); + return defaultService.rows(tableName, limit, start); } /** @@ -704,7 +709,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public long deleteSynonymRelationships(Synonym syn, Taxon taxon) { - return defaultTaxonService.deleteSynonymRelationships(syn, taxon); + return defaultService.deleteSynonymRelationships(syn, taxon); } /** @@ -713,7 +718,7 @@ public class TransientTaxonService implements ITaxonService { * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase) */ @Override - public UUID save(TaxonBase newInstance) { + public TaxonBase save(TaxonBase newInstance) { return null; } @@ -737,7 +742,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public void changeHomotypicalGroupOfSynonym(Synonym synonym, HomotypicalGroup newHomotypicalGroup, Taxon targetTaxon, boolean removeFromOtherTaxa, boolean setBasionymRelationIfApplicable) { - defaultTaxonService.changeHomotypicalGroupOfSynonym(synonym, newHomotypicalGroup, targetTaxon, removeFromOtherTaxa, setBasionymRelationIfApplicable); + defaultService.changeHomotypicalGroupOfSynonym(synonym, newHomotypicalGroup, targetTaxon, removeFromOtherTaxa, setBasionymRelationIfApplicable); } /** @@ -757,7 +762,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public UUID update(TaxonBase transientObject) { - return defaultTaxonService.update(transientObject); + return defaultService.update(transientObject); } /** @@ -772,7 +777,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List list(TaxonBase example, Set includeProperties, Integer limit, Integer start, List orderHints, List propertyPaths) { - return defaultTaxonService.list(example, includeProperties, limit, start, orderHints, propertyPaths); + return defaultService.list(example, includeProperties, limit, start, orderHints, propertyPaths); } /** @@ -789,7 +794,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public SynonymRelationship moveSynonymToAnotherTaxon(SynonymRelationship oldSynonymRelation, Taxon newTaxon, boolean moveHomotypicGroup, SynonymRelationshipType newSynonymRelationshipType, Reference newReference, String newReferenceDetail, boolean keepReference) throws HomotypicalGroupChangeException { - return defaultTaxonService.moveSynonymToAnotherTaxon(oldSynonymRelation, newTaxon, moveHomotypicGroup, newSynonymRelationshipType, newReference, newReferenceDetail, keepReference); + return defaultService.moveSynonymToAnotherTaxon(oldSynonymRelation, newTaxon, moveHomotypicGroup, newSynonymRelationshipType, newReference, newReferenceDetail, keepReference); } /** @@ -801,7 +806,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public int deduplicate(Class clazz, IMatchStrategy matchStrategy, IMergeStrategy mergeStrategy) { - return defaultTaxonService.deduplicate(clazz, matchStrategy, mergeStrategy); + return defaultService.deduplicate(clazz, matchStrategy, mergeStrategy); } /** @@ -816,7 +821,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager findTitleCache(Class clazz, String queryString, Integer pageSize, Integer pageNumber, List orderHints, MatchMode matchMode) { - return defaultTaxonService.findTitleCache(clazz, queryString, pageSize, pageNumber, orderHints, matchMode); + return defaultService.findTitleCache(clazz, queryString, pageSize, pageNumber, orderHints, matchMode); } /** @@ -831,7 +836,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List listToTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) { - return defaultTaxonService.listToTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.listToTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -846,7 +851,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager pageToTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) { - return defaultTaxonService.pageToTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.pageToTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -861,7 +866,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List listFromTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) { - return defaultTaxonService.listFromTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.listFromTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -876,7 +881,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager pageFromTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) { - return defaultTaxonService.pageFromTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.pageFromTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -891,7 +896,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Set listRelatedTaxa(Taxon taxon, Set includeRelationships, Integer maxDepth, Integer limit, Integer start, List propertyPaths) { - return defaultTaxonService.listRelatedTaxa(taxon, includeRelationships, maxDepth, limit, start, propertyPaths); + return defaultService.listRelatedTaxa(taxon, includeRelationships, maxDepth, limit, start, propertyPaths); } /** @@ -904,7 +909,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List listClassifications(TaxonBase taxonBase, Integer limit, Integer start, List propertyPaths) { - return defaultTaxonService.listClassifications(taxonBase, limit, start, propertyPaths); + return defaultService.listClassifications(taxonBase, limit, start, propertyPaths); } /** @@ -919,7 +924,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager getSynonyms(Synonym synonym, SynonymRelationshipType type, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) { - return defaultTaxonService.getSynonyms(synonym, type, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.getSynonyms(synonym, type, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -934,7 +939,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager getSynonyms(Taxon taxon, SynonymRelationshipType type, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) { - return defaultTaxonService.getSynonyms(taxon, type, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.getSynonyms(taxon, type, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -945,7 +950,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List getHomotypicSynonymsByHomotypicGroup(Taxon taxon, List propertyPaths) { - return defaultTaxonService.getHomotypicSynonymsByHomotypicGroup(taxon, propertyPaths); + return defaultService.getHomotypicSynonymsByHomotypicGroup(taxon, propertyPaths); } /** @@ -956,7 +961,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List> getHeterotypicSynonymyGroups(Taxon taxon, List propertyPaths) { - return defaultTaxonService.getHeterotypicSynonymyGroups(taxon, propertyPaths); + return defaultService.getHeterotypicSynonymyGroups(taxon, propertyPaths); } /** @@ -971,7 +976,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager search(Class clazz, String queryString, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) { - return defaultTaxonService.search(clazz, queryString, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.search(clazz, queryString, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -988,7 +993,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager findTaxaByName(Class clazz, String uninomial, String infragenericEpithet, String specificEpithet, String infraspecificEpithet, Rank rank, Integer pageSize, Integer pageNumber) { - return defaultTaxonService.findTaxaByName(clazz, uninomial, infragenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber); + return defaultService.findTaxaByName(clazz, uninomial, infragenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber); } /** @@ -1005,7 +1010,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List listTaxaByName(Class clazz, String uninomial, String infragenericEpithet, String specificEpithet, String infraspecificEpithet, Rank rank, Integer pageSize, Integer pageNumber) { - return defaultTaxonService.listTaxaByName(clazz, uninomial, infragenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber); + return defaultService.listTaxaByName(clazz, uninomial, infragenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber); } /** @@ -1015,7 +1020,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager findTaxaAndNames(IFindTaxaAndNamesConfigurator configurator) { - return defaultTaxonService.findTaxaAndNames(configurator); + return defaultService.findTaxaAndNames(configurator); } /** @@ -1038,7 +1043,7 @@ public class TransientTaxonService implements ITaxonService { @Deprecated @Override public Pager> findByEverythingFullText(String queryString, Classification classification, List languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) throws CorruptIndexException, IOException, ParseException, LuceneMultiSearchException { - return defaultTaxonService.findByEverythingFullText(queryString, classification, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.findByEverythingFullText(queryString, classification, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -1059,49 +1064,32 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager> findByFullText(Class clazz, String queryString, Classification classification, List languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) throws CorruptIndexException, IOException, ParseException { - return defaultTaxonService.findByFullText(clazz, queryString, classification, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.findByFullText(clazz, queryString, classification, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths); } - /** - * @param areaFilter - * @param statusFilter - * @param classification - * @param pageSize - * @param pageNumber - * @param orderHints - * @param propertyPaths - * @return - * @throws IOException - * @throws ParseException + + /* (non-Javadoc) * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDistribution(java.util.List, java.util.List, eu.etaxonomy.cdm.model.taxon.Classification, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List) */ @Override - public Pager> findByDistribution(List areaFilter, List> statusFilter, Classification classification, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) throws IOException, ParseException { - return defaultTaxonService.findByDistribution(areaFilter, statusFilter, classification, pageSize, pageNumber, orderHints, propertyPaths); + public Pager> findByDistribution(List areaFilter, + List statusFilter, Classification classification, Integer pageSize, + Integer pageNumber, List orderHints, List propertyPaths) throws IOException, + ParseException { + return defaultService.findByDistribution(areaFilter, statusFilter, classification, pageSize, pageNumber, orderHints, propertyPaths); } - /** - * @param searchModes - * @param queryString - * @param classification - * @param namedAreas - * @param distributionStatus - * @param languages - * @param highlightFragments - * @param pageSize - * @param pageNumber - * @param orderHints - * @param propertyPaths - * @return - * @throws CorruptIndexException - * @throws IOException - * @throws ParseException - * @throws LuceneMultiSearchException + + /* (non-Javadoc) * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesByFullText(java.util.EnumSet, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.Set, java.util.Set, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List) */ @Override - public Pager> findTaxaAndNamesByFullText(EnumSet searchModes, String queryString, Classification classification, Set namedAreas, Set> distributionStatus, List languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) throws CorruptIndexException, IOException, ParseException, LuceneMultiSearchException { - return defaultTaxonService.findTaxaAndNamesByFullText(searchModes, queryString, classification, namedAreas, distributionStatus, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths); + public Pager> findTaxaAndNamesByFullText(EnumSet searchModes, + String queryString, Classification classification, Set namedAreas, + Set distributionStatus, List languages, boolean highlightFragments, + Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) + throws CorruptIndexException, IOException, ParseException, LuceneMultiSearchException { + return defaultService.findTaxaAndNamesByFullText(searchModes, queryString, classification, namedAreas, distributionStatus, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -1123,7 +1111,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Pager> findByDescriptionElementFullText(Class clazz, String queryString, Classification classification, List features, List languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths) throws CorruptIndexException, IOException, ParseException { - return defaultTaxonService.findByDescriptionElementFullText(clazz, queryString, classification, features, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths); + return defaultService.findByDescriptionElementFullText(clazz, queryString, classification, features, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths); } /** @@ -1139,7 +1127,7 @@ public class TransientTaxonService implements ITaxonService { @Deprecated @Override public List getAllMedia(Taxon taxon, int size, int height, int widthOrDuration, String[] mimeTypes) { - return defaultTaxonService.getAllMedia(taxon, size, height, widthOrDuration, mimeTypes); + return defaultService.getAllMedia(taxon, size, height, widthOrDuration, mimeTypes); } /** @@ -1154,7 +1142,7 @@ public class TransientTaxonService implements ITaxonService { @Deprecated @Override public List listTaxonDescriptionMedia(Taxon taxon, Set includeRelationships, boolean limitToGalleries, List propertyPath) { - return defaultTaxonService.listTaxonDescriptionMedia(taxon, includeRelationships, limitToGalleries, propertyPath); + return defaultService.listTaxonDescriptionMedia(taxon, includeRelationships, limitToGalleries, propertyPath); } /** @@ -1170,7 +1158,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List listMedia(Taxon taxon, Set includeRelationships, Boolean limitToGalleries, Boolean includeTaxonDescriptions, Boolean includeOccurrences, Boolean includeTaxonNameDescriptions, List propertyPath) { - return defaultTaxonService.listMedia(taxon, includeRelationships, limitToGalleries, includeTaxonDescriptions, includeOccurrences, includeTaxonNameDescriptions, propertyPath); + return defaultService.listMedia(taxon, includeRelationships, limitToGalleries, includeTaxonDescriptions, includeOccurrences, includeTaxonNameDescriptions, propertyPath); } /** @@ -1180,7 +1168,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List findTaxaByID(Set listOfIDs) { - return defaultTaxonService.findTaxaByID(listOfIDs); + return defaultService.findTaxaByID(listOfIDs); } /** @@ -1191,7 +1179,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public TaxonBase findTaxonByUuid(UUID uuid, List propertyPaths) { - return defaultTaxonService.findTaxonByUuid(uuid, propertyPaths); + return defaultService.findTaxonByUuid(uuid, propertyPaths); } /** @@ -1200,7 +1188,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public int countAllRelationships() { - return defaultTaxonService.countAllRelationships(); + return defaultService.countAllRelationships(); } /** @@ -1210,7 +1198,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List findIdenticalTaxonNames(List propertyPath) { - return defaultTaxonService.findIdenticalTaxonNames(propertyPath); + return defaultService.findIdenticalTaxonNames(propertyPath); } /** @@ -1220,7 +1208,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List findIdenticalTaxonNameIds(List propertyPath) { - return defaultTaxonService.findIdenticalTaxonNameIds(propertyPath); + return defaultService.findIdenticalTaxonNameIds(propertyPath); } /** @@ -1230,7 +1218,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public String getPhylumName(TaxonNameBase name) { - return defaultTaxonService.getPhylumName(name); + return defaultService.getPhylumName(name); } /** @@ -1240,7 +1228,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public long deleteSynonymRelationships(Synonym syn) { - return defaultTaxonService.deleteSynonymRelationships(syn); + return defaultService.deleteSynonymRelationships(syn); } /** @@ -1256,7 +1244,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List listSynonymRelationships(TaxonBase taxonBase, SynonymRelationshipType type, Integer pageSize, Integer pageNumber, List orderHints, List propertyPaths, Direction direction) { - return defaultTaxonService.listSynonymRelationships(taxonBase, type, pageSize, pageNumber, orderHints, propertyPaths, direction); + return defaultService.listSynonymRelationships(taxonBase, type, pageSize, pageNumber, orderHints, propertyPaths, direction); } /** @@ -1266,7 +1254,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Taxon findBestMatchingTaxon(String taxonName) { - return defaultTaxonService.findBestMatchingTaxon(taxonName); + return defaultService.findBestMatchingTaxon(taxonName); } /** @@ -1276,7 +1264,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Taxon findBestMatchingTaxon(MatchingTaxonConfigurator config) { - return defaultTaxonService.findBestMatchingTaxon(config); + return defaultService.findBestMatchingTaxon(config); } /** @@ -1286,7 +1274,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public Synonym findBestMatchingSynonym(String taxonName) { - return defaultTaxonService.findBestMatchingSynonym(taxonName); + return defaultService.findBestMatchingSynonym(taxonName); } /** @@ -1295,7 +1283,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List> getUuidAndTitleCacheTaxon() { - return defaultTaxonService.getUuidAndTitleCacheTaxon(); + return defaultService.getUuidAndTitleCacheTaxon(); } /** @@ -1304,7 +1292,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List> getUuidAndTitleCacheSynonym() { - return defaultTaxonService.getUuidAndTitleCacheSynonym(); + return defaultService.getUuidAndTitleCacheSynonym(); } /** @@ -1313,8 +1301,8 @@ public class TransientTaxonService implements ITaxonService { * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesForEditor(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator) */ @Override - public List> findTaxaAndNamesForEditor(IFindTaxaAndNamesConfigurator configurator) { - return defaultTaxonService.findTaxaAndNamesForEditor(configurator); + public List> findTaxaAndNamesForEditor(IFindTaxaAndNamesConfigurator configurator) { + return defaultService.findTaxaAndNamesForEditor(configurator); } /** @@ -1327,7 +1315,7 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List createInferredSynonyms(Taxon taxon, Classification tree, SynonymRelationshipType type, boolean doWithMisappliedNames) { - return defaultTaxonService.createInferredSynonyms(taxon, tree, type, doWithMisappliedNames); + return defaultService.createInferredSynonyms(taxon, tree, type, doWithMisappliedNames); } /** @@ -1339,90 +1327,200 @@ public class TransientTaxonService implements ITaxonService { */ @Override public List createAllInferredSynonyms(Taxon taxon, Classification tree, boolean doWithMisappliedNames) { - return defaultTaxonService.createAllInferredSynonyms(taxon, tree, doWithMisappliedNames); + return defaultService.createAllInferredSynonyms(taxon, tree, doWithMisappliedNames); + } + + @Override + public DeleteResult deleteSynonym(Synonym arg0, SynonymDeletionConfigurator arg1) { + return defaultService.deleteSynonym(arg0, arg1); + } + + @Override + public DeleteResult deleteSynonym(Synonym arg0, Taxon arg1, SynonymDeletionConfigurator arg2) { + return defaultService.deleteSynonym(arg0, arg1, arg2); + } + + @Override + public List> getSynonymsByHomotypicGroup(Taxon taxon, List propertyPaths) { + return defaultService.getSynonymsByHomotypicGroup(taxon, propertyPaths); + } + + @Override + public Synonym changeRelatedTaxonToSynonym(Taxon fromTaxon, Taxon toTaxon, + TaxonRelationshipType oldRelationshipType, + SynonymRelationshipType synonymRelationshipType) + throws DataChangeNoRollbackException { + + return defaultService.changeRelatedTaxonToSynonym(fromTaxon, toTaxon, oldRelationshipType, synonymRelationshipType); } /* (non-Javadoc) - * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator) + * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List) */ @Override - public String deleteSynonym(Synonym arg0, SynonymDeletionConfigurator arg1) { - return defaultTaxonService.deleteSynonym(arg0, arg1); + public Pager pageAcceptedTaxaFor(UUID synonymUuid, UUID classificationUuid, Integer pageSize, + Integer pageNumber, List orderHints, List propertyPaths) { + return defaultService.pageAcceptedTaxaFor(synonymUuid, classificationUuid, pageSize, pageNumber, orderHints, propertyPaths); } /* (non-Javadoc) - * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator) + * @see eu.etaxonomy.cdm.api.service.ITaxonService#listAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List) */ @Override - public String deleteSynonym(Synonym arg0, Taxon arg1, SynonymDeletionConfigurator arg2) { - return defaultTaxonService.deleteSynonym(arg0, arg1, arg2); + public List listAcceptedTaxaFor(UUID synonymUuid, UUID classificationUuid, Integer pageSize, + Integer pageNumber, List orderHints, List propertyPaths) { + return defaultService.listAcceptedTaxaFor(synonymUuid, classificationUuid, pageSize, pageNumber, orderHints, propertyPaths); + } + + @Override + public DeleteResult isDeletable(TaxonBase object, + DeleteConfiguratorBase config) { + // TODO Auto-generated method stub + return null; + } + + @Override + public IncludedTaxaDTO listIncludedTaxa(UUID taxonUuid, + IncludedTaxonConfiguration configuration) { + // TODO Auto-generated method stub + return null; + } + + @Override + public TaxonBase findWithoutFlush(UUID uuid) { + return defaultService.findWithoutFlush(uuid); } /* (non-Javadoc) - * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteTaxon(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.api.service.config.TaxonDeletionConfigurator, eu.etaxonomy.cdm.model.taxon.Classification) + * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator) */ @Override - public String deleteTaxon(Taxon arg0, TaxonDeletionConfigurator arg1, Classification arg2) { - return defaultTaxonService.deleteTaxon(arg0, arg1, arg2); + public List findTaxaByName(MatchingTaxonConfigurator config) { + return defaultService.findTaxaByName(config); + } + + @Override + public Pager> findByIdentifier(Class clazz, String identifier, DefinedTerm identifierType, MatchMode matchmode, boolean includeEntity, Integer pageSize, Integer pageNumber, List propertyPaths){ + return defaultService.findByIdentifier(clazz, identifier, identifierType, matchmode, includeEntity, pageSize, pageNumber, propertyPaths); } /* (non-Javadoc) - * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List) + * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByIdentifier(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.common.DefinedTerm, eu.etaxonomy.cdm.model.taxon.TaxonNode, eu.etaxonomy.cdm.persistence.query.MatchMode, boolean, java.lang.Integer, java.lang.Integer, java.util.List) */ @Override - public List> getSynonymsByHomotypicGroup(Taxon taxon, List propertyPaths) { - return defaultTaxonService.getSynonymsByHomotypicGroup(taxon, propertyPaths); + public Pager> findByIdentifier(Class clazz, String identifier, + DefinedTerm identifierType, TaxonNode subtreeFilter, MatchMode matchmode, boolean includeEntity, + Integer pageSize, Integer pageNumber, List propertyPaths) { + return defaultService.findByIdentifier(clazz, identifier, identifierType, subtreeFilter, matchmode, includeEntity, pageSize, pageNumber, propertyPaths); } - @Override - public Synonym changeRelatedTaxonToSynonym(Taxon fromTaxon, Taxon toTaxon, - TaxonRelationshipType oldRelationshipType, - SynonymRelationshipType synonymRelationshipType) - throws DataChangeNoRollbackException { - return defaultTaxonService.changeRelatedTaxonToSynonym(fromTaxon, toTaxon, oldRelationshipType, synonymRelationshipType); - } /* (non-Javadoc) - * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List) + * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(java.util.UUID, java.util.UUID, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator) */ @Override - public Pager pageAcceptedTaxaFor(UUID synonymUuid, UUID classificationUuid, Integer pageSize, - Integer pageNumber, List orderHints, List propertyPaths) { - return defaultTaxonService.pageAcceptedTaxaFor(synonymUuid, classificationUuid, pageSize, pageNumber, orderHints, propertyPaths); + public DeleteResult deleteSynonym(UUID synonymUuid, UUID taxonUuid, SynonymDeletionConfigurator config) { + return defaultService.deleteSynonym(synonymUuid, taxonUuid, config); + } + + + /** + * {@inheritDoc} + + */ + @Override + public UpdateResult swapSynonymAndAcceptedTaxon(UUID synonymUUid, UUID acceptedTaxonUuid) { + return defaultService.swapSynonymAndAcceptedTaxon(synonymUUid, acceptedTaxonUuid); } /* (non-Javadoc) - * @see eu.etaxonomy.cdm.api.service.ITaxonService#listAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List) + * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteTaxon(java.util.UUID, eu.etaxonomy.cdm.api.service.config.TaxonDeletionConfigurator, java.util.UUID) */ @Override - public List listAcceptedTaxaFor(UUID synonymUuid, UUID classificationUuid, Integer pageSize, - Integer pageNumber, List orderHints, List propertyPaths) { - return defaultTaxonService.listAcceptedTaxaFor(synonymUuid, classificationUuid, pageSize, pageNumber, orderHints, propertyPaths); + public DeleteResult deleteTaxon(UUID taxonUuid, TaxonDeletionConfigurator config, UUID classificationUuid) { + return defaultService.deleteTaxon(taxonUuid, config, classificationUuid); } - @Override - public List isDeletable(TaxonBase object, - DeleteConfiguratorBase config) { - // TODO Auto-generated method stub - return null; - } @Override - public IncludedTaxaDTO listIncludedTaxa(UUID taxonUuid, - IncludedTaxonConfiguration configuration) { - // TODO Auto-generated method stub - return null; + public UpdateResult moveFactualDateToAnotherTaxon(UUID arg0, UUID arg1) { + return defaultService.moveFactualDateToAnotherTaxon(arg0, arg1); } - @Override - public TaxonBase findWithoutFlush(UUID uuid) { - return defaultTaxonService.findWithoutFlush(uuid); - } + + /** + * {@inheritDoc} + */ + @Override + public UpdateResult moveSynonymToAnotherTaxon( + SynonymRelationship oldSynonymRelation, UUID newTaxonUUID, + boolean moveHomotypicGroup, + SynonymRelationshipType newSynonymRelationshipType, + Reference reference, String referenceDetail, boolean keepReference) + throws HomotypicalGroupChangeException { + + return defaultService.moveSynonymToAnotherTaxon(oldSynonymRelation, newTaxonUUID, moveHomotypicGroup, newSynonymRelationshipType, reference, referenceDetail, keepReference); + } + /* (non-Javadoc) + * @see eu.etaxonomy.cdm.api.service.IService#delete(java.util.UUID) + */ + @Override + public DeleteResult delete(UUID uuid) { + return defaultService.delete(uuid); + } + /* (non-Javadoc) + * @see eu.etaxonomy.cdm.api.service.IService#delete(java.util.Collection) + */ + @Override + public DeleteResult delete(Collection arg0) { + return defaultService.delete(arg0); + } + /* (non-Javadoc) + * @see eu.etaxonomy.cdm.api.service.IService#merge(java.util.List) + */ + @Override + public List merge(List arg0) { + return defaultService.merge(arg0); + } + /* (non-Javadoc) + * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(java.util.UUID, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator) + */ + @Override + public DeleteResult deleteSynonym(UUID arg0, SynonymDeletionConfigurator arg1) { + return defaultService.deleteSynonym(arg0, arg1); + } + + /* (non-Javadoc) + * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeRelatedTaxonToSynonym(java.util.UUID, java.util.UUID, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType) + */ + @Override + public UpdateResult changeRelatedTaxonToSynonym(UUID arg0, UUID arg1, TaxonRelationshipType arg2, + SynonymRelationshipType arg3) throws DataChangeNoRollbackException { + return defaultService.changeRelatedTaxonToSynonym(arg0, arg1, arg2, arg3); + } + + /* (non-Javadoc) + * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToAcceptedTaxon(java.util.UUID, java.util.UUID, boolean, boolean, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String) + */ + @Override + public Taxon changeSynonymToAcceptedTaxon(UUID arg0, UUID arg1, boolean arg2, boolean arg3, Reference arg4, + String arg5) throws HomotypicalGroupChangeException { + return defaultService.changeSynonymToAcceptedTaxon(arg0, arg1, arg2, arg3, arg4, arg5); + } + + /* (non-Javadoc) + * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToRelatedTaxon(java.util.UUID, java.util.UUID, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String) + */ + @Override + public UpdateResult changeSynonymToRelatedTaxon(UUID arg0, UUID arg1, TaxonRelationshipType arg2, Reference arg3, + String arg4) { + return defaultService.changeSynonymToRelatedTaxon(arg0, arg1, arg2, arg3, arg4); + } }