X-Git-Url: https://dev.e-taxonomy.eu/gitweb/taxeditor.git/blobdiff_plain/941644f3e5be7c16cfd5ab1198237b0e0b7caf52..5b852e5bab53b546a32b71de4ea5dbe5bd4c2d7f:/eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/preference/PreferencesUtil.java diff --git a/eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/preference/PreferencesUtil.java b/eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/preference/PreferencesUtil.java index dbaec0027..24beb44d4 100644 --- a/eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/preference/PreferencesUtil.java +++ b/eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/preference/PreferencesUtil.java @@ -26,6 +26,7 @@ import java.util.StringTokenizer; import java.util.UUID; import org.apache.commons.lang.StringUtils; +import org.apache.log4j.Logger; import org.eclipse.equinox.internal.p2.ui.model.MetadataRepositoryElement; import org.eclipse.jface.preference.IPreferenceStore; import org.eclipse.jface.window.Window; @@ -34,6 +35,7 @@ import org.eclipse.swt.widgets.Control; import org.eclipse.swt.widgets.Shell; import org.eclipse.ui.PlatformUI; +import eu.etaxonomy.cdm.api.application.ICdmRepository; import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeConfigurator; import eu.etaxonomy.cdm.api.service.IFeatureTreeService; import eu.etaxonomy.cdm.api.service.ITermService; @@ -41,6 +43,7 @@ import eu.etaxonomy.cdm.api.service.config.FindTaxaAndNamesConfiguratorImpl; import eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator; import eu.etaxonomy.cdm.common.CdmUtils; import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper; +import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator; import eu.etaxonomy.cdm.model.common.ICdmBase; import eu.etaxonomy.cdm.model.common.IDefinedTerm; import eu.etaxonomy.cdm.model.common.ISimpleTerm; @@ -48,6 +51,10 @@ import eu.etaxonomy.cdm.model.common.Language; import eu.etaxonomy.cdm.model.common.MarkerType; import eu.etaxonomy.cdm.model.common.TermBase; import eu.etaxonomy.cdm.model.description.FeatureTree; +import eu.etaxonomy.cdm.model.metadata.CdmPreference; +import eu.etaxonomy.cdm.model.metadata.CdmPreference.PrefKey; +import eu.etaxonomy.cdm.model.metadata.PreferencePredicate; +import eu.etaxonomy.cdm.model.metadata.PreferenceSubject; import eu.etaxonomy.cdm.model.name.NomenclaturalCode; import eu.etaxonomy.cdm.strategy.match.DefaultMatchStrategy; import eu.etaxonomy.cdm.strategy.match.IMatchStrategy; @@ -80,6 +87,8 @@ public class PreferencesUtil implements IPreferenceKeys { public static final String P2_REPOSITORIES_DELIM = ","; public static final String P2_REPOSITORY_FIELDS_DELIM = ";"; + private final static Logger logger = Logger.getLogger(PreferencesUtil.class); + /** *

* getPreferenceStore @@ -100,10 +109,52 @@ public class PreferencesUtil implements IPreferenceKeys { * a {@link eu.etaxonomy.cdm.model.name.NomenclaturalCode} * object. */ - public static void setPreferredNomenclaturalCode( - NomenclaturalCode preferredCode) { - getPreferenceStore().setValue(PREFERRED_NOMENCLATURAL_CODE_KEY, - getPreferenceKey(preferredCode)); + public static CdmPreference setPreferredNomenclaturalCode( + NomenclaturalCode preferredCode, boolean local) { + if (local){ + getPreferenceStore().setValue(PREFERRED_NOMENCLATURAL_CODE_KEY, + getPreferenceKey(preferredCode)); + } + else{ + ICdmRepository controller; + controller = CdmStore.getCurrentApplicationConfiguration(); + PrefKey key = CdmPreference.NewKey(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.NomenclaturalCode); + CdmPreference preference = null; + if (controller == null){ + return null; + } + if (preferredCode == null){ + preference = controller.getPreferenceService().find(key); + if (preference == null){ + return null; + } else{ + int index = StringUtils.lastIndexOf(preference.getValue(), "."); + UUID uuid = UUID.fromString(preference.getValue().substring(index +1, preference.getValue().length())); + preferredCode = NomenclaturalCode.getByUuid(uuid); + + getPreferenceStore().setValue(CDM_NOMENCLATURAL_CODE_KEY, + getPreferenceKey(preferredCode)); + getPreferenceStore().setValue(ALLOW_OVERRIDE_NOMENCLATURAL_CODE_KEY,preference.isAllowOverride()); + return preference; + } + } else{ + preference = CdmPreference.NewInstance(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.NomenclaturalCode, preferredCode.getKey()); + controller.getPreferenceService().set(preference); + + } + } + return null; + + + + } + + public static NomenclaturalCode getPreferredNomenclaturalCode(){ + if (getPreferenceStore().getBoolean(OVERRIDE_NOMENCLATURAL_CODE_KEY)) { + return getPreferredNomenclaturalCode(true); + } else{ + return getPreferredNomenclaturalCode(false); + } } /** @@ -113,11 +164,23 @@ public class PreferencesUtil implements IPreferenceKeys { * * @return a {@link eu.etaxonomy.cdm.model.name.NomenclaturalCode} object. */ - public static NomenclaturalCode getPreferredNomenclaturalCode() { + public static NomenclaturalCode getPreferredNomenclaturalCode(boolean useLocal) { - for (NomenclaturalCode code : NomenclaturalCodeHelper.getAllCodes()) { - String preferredCode = getPreferenceStore().getString( + CdmPreference pref = null; + if (!useLocal){ + pref = getPreferenceFromDB(PreferencePredicate.NomenclaturalCode); + } + + String preferredCode; + if(pref == null){ + preferredCode = getPreferenceStore().getString( PREFERRED_NOMENCLATURAL_CODE_KEY); + + }else{ + preferredCode = pref.getValue(); + } + + for (NomenclaturalCode code : NomenclaturalCodeHelper.getAllCodes()) { if (getPreferenceKey(code).equals(preferredCode)) { return code; } @@ -125,6 +188,24 @@ public class PreferencesUtil implements IPreferenceKeys { return null; } + + private static CdmPreference getPreferenceFromDB(PreferencePredicate predicate){ + ICdmRepository controller; + CdmPreference pref = null; + + try{ + controller = CdmStore.getCurrentApplicationConfiguration(); + PrefKey key = CdmPreference.NewKey(PreferenceSubject.NewDatabaseInstance(), predicate); + pref = controller.getPreferenceService().find(key); + }catch(Exception e){ + e.printStackTrace(); + } + + return pref; + + } + + public static String getPreferredDefaultLangugae(){ String preferredLanguage = getPreferenceStore().getString(DEFAULT_LANGUAGE_EDITOR); if(StringUtils.isNotEmpty(preferredLanguage) && StringUtils.isNotBlank(preferredLanguage)){ @@ -309,6 +390,7 @@ public class PreferencesUtil implements IPreferenceKeys { TAXON_SERVICE_CONFIGURATOR_NAMES)); configurator.setDoTaxaByCommonNames(getPreferenceStore().getBoolean( TAXON_SERVICE_CONFIGURATOR_COMMON_NAMES)); + //configurator.setMatchMode(eu.etaxonomy.cdm.persistence.query.MatchMode.valueOf(getPreferenceStore().getString(TAXON_SERVICE_CONFIGURATOR_MATCH_MODE))); return configurator; } @@ -396,6 +478,23 @@ public class PreferencesUtil implements IPreferenceKeys { getPreferenceStore().setDefault(OPENURL_IMAGE_MAX_WIDTH, "1000"); getPreferenceStore().setDefault(OPENURL_IMAGE_MAX_HEIGHT, "1000"); getPreferenceStore().setDefault(IPreferenceKeys.DISTRIBUTION_AREA_PREFRENCES_ACTIVE, false); + getPreferenceStore().setDefault(CHECKLIST_ID_IN_VOCABULARY, true); + getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_ATOMISED_EPITHETS, true); + getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_AUTHORSHIP_CACHE, true); + getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_AUTHORSHIP, true); + getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_HYBRID, true); + getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_LSID, true); + getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP, true); + getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_NAMECACHE, true); + getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_CODE, true); + getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE, true); + getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS, true); + getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_PROTOLOGUE, true); + getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_RANK, true); + getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION, true); + getPreferenceStore().setDefault(SORT_NODES_NATURALLY, false); + getPreferenceStore().setDefault(SORT_NODES_ALPHABETICALLY, false); + } /** @@ -407,30 +506,38 @@ public class PreferencesUtil implements IPreferenceKeys { // First time Editor is opened, no nomenclatural code has been set - if (PreferencesUtil.getPreferredNomenclaturalCode() == null) { - PreferencesUtil.setPreferredNomenclaturalCode(NomenclaturalCode.ICNAFP); - /* + if (PreferencesUtil.getPreferredNomenclaturalCode(true) == null) { + PreferencesUtil.setPreferredNomenclaturalCode(NomenclaturalCode.ICNAFP, true); + } - StoreUtil.info("No nomencatural code set."); - Shell shell = StoreUtil.getShell(); - Query user re: preferred nom. code - Dialog dialog = new InitNomenclaturalCodePrefDialog(shell); - dialog.open(); + } + public static void setNomenclaturalCodePreferences(){ + ICdmRepository controller; + controller = CdmStore.getCurrentApplicationConfiguration(); + PrefKey key = CdmPreference.NewKey(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.NomenclaturalCode); + CdmPreference preference = null; + if (controller == null){ + return ; + } + preference = controller.getPreferenceService().find(key); + if (preference == null){ + return; + } + getPreferenceStore().setValue(ALLOW_OVERRIDE_NOMENCLATURAL_CODE_KEY, preference.isAllowOverride()); - // Short message confirming user's choice - NomenclaturalCode code = PreferencesUtil - .getPreferredNomenclaturalCode(); - MessageDialog - .openInformation( - shell, - "Nomenclatural code set", - "The following has been set as your preferred nomenclatural code:\n\n\t" - + NomenclaturalCodeHelper - .getDescription(code) - + "\n\nYou can change the nomenclatural code at any time in the \"Preferences\" menu.");*/ - } + int index = StringUtils.lastIndexOf(preference.getValue(), "."); + UUID uuid = UUID.fromString(preference.getValue().substring(index +1, preference.getValue().length())); + NomenclaturalCode preferredCode = NomenclaturalCode.getByUuid(uuid); + + getPreferenceStore().setValue(CDM_NOMENCLATURAL_CODE_KEY, + getPreferenceKey(preferredCode)); + + if (!preference.isAllowOverride()){ + getPreferenceStore().setValue(PREFERRED_NOMENCLATURAL_CODE_KEY, + getPreferenceKey(preferredCode)); + } } public static void checkDefaultLanguage(){ @@ -756,8 +863,8 @@ public class PreferencesUtil implements IPreferenceKeys { *

* getSortRanksNaturally *

- * - * @return a boolean. + * + * @return a boolean. */ public static boolean getSortNodesNaturally() { return getPreferenceStore().getBoolean(SORT_NODES_NATURALLY); @@ -835,6 +942,259 @@ public class PreferencesUtil implements IPreferenceKeys { getPreferenceStore().setValue(IS_SHOW_UP_WIDGET_IS_DISPOSED, selection); } + /** + * @return + */ + public static boolean isShowIdInVocabularyInChecklistEditor() { + return getPreferenceStore().getBoolean(IPreferenceKeys.CHECKLIST_ID_IN_VOCABULARY); + } + public static void setShowIdInVocabularyInChecklistEditor(boolean selection) { + getPreferenceStore().setValue(CHECKLIST_ID_IN_VOCABULARY, selection); + } + + /** + * @return + */ + public static boolean isShowRankInChecklistEditor() { + return getPreferenceStore().getBoolean(IPreferenceKeys.CHECKLIST_SHOW_RANK); + } + public static void setShowRankInChecklistEditor(boolean selection) { + getPreferenceStore().setValue(CHECKLIST_SHOW_RANK, selection); + } + + /** + * @param object + * @param b + * @return + */ + public static NameDetailsConfigurator setPreferredNameDetailsConfiguration( boolean local) { + NameDetailsConfigurator config = new NameDetailsConfigurator(true); + + CdmPreference preference = null; + + if (!local) { + preference = getPreferenceFromDB(PreferencePredicate.NameDetailsView); + } + if (preference == null){ + return null; + } + + getPreferenceStore().setValue(ALLOW_OVERRIDE_NAMEDETAILS, preference.isAllowOverride()); + + //the preference value is build like this: + //:true;:false.... + + String value = preference.getValue(); + String [] sections = value.split(";"); + Map sectionMap = new HashMap(); + String[] sectionValues; + for (String sectionValue: sections){ + sectionValues = sectionValue.split(":"); + sectionMap.put(sectionValues[0], Boolean.valueOf(sectionValues[1])); + } + + + + getPreferenceStore().setValue(SHOW_SIMPLE_NAME_DETAILS_TAXON, + (sectionMap.get("taxon"))); + config.setTaxonSectionActivated(sectionMap.get("taxon")); + + getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_LSID, + (sectionMap.get("lsid"))); + config.setLSIDActivated(sectionMap.get("lsid")); + + getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_CODE, + (sectionMap.get("nc"))); + config.setNomenclaturalCodeActived(sectionMap.get("nc")); + + getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_APPENDED_PHRASE, + (sectionMap.get("ap"))); + config.setAppendedPhraseActivated(sectionMap.get("ap")); + + getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_RANK, + (sectionMap.get("rank"))); + config.setRankActivated(sectionMap.get("rank")); + + + getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_ATOMISED_EPITHETS, + (sectionMap.get("atomisedEpithets"))); + config.setAtomisedEpithetsActivated(sectionMap.get("atomisedEpithets")); + + getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_AUTHORSHIP, + (sectionMap.get("author"))); + config.setAuthorshipSectionActivated(sectionMap.get("author")); + + getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE, + (sectionMap.get("nomRef"))); + config.setNomenclaturalReferenceSectionActivated(sectionMap.get("nomRef")); + + getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS, + (sectionMap.get("nomStat"))); + config.setNomenclaturalStatusSectionActivated(sectionMap.get("nomStat")); + + + getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_PROTOLOGUE, + (sectionMap.get("protologue"))); + config.setProtologueActivated(sectionMap.get("protologue")); + + getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION, + (sectionMap.get("typeDes"))); + config.setTypeDesignationSectionActivated(sectionMap.get("typeDes")); + + getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP, + (sectionMap.get("nameRelation"))); + config.setNameRelationsSectionActivated(sectionMap.get("nameRelation")); + + return config; + } + + public static boolean getIsDeterminiationOnlyForFieldUnit(boolean local){ + CdmPreference preference = null; + + if (!local) { + preference = getPreferenceFromDB(PreferencePredicate.DeterminationOnlyForFieldUnits); + } + if (preference == null){ + return getPreferenceStore().getBoolean(DETERMINATION_ONLY_FOR_FIELD_UNITS); + } + return Boolean.valueOf(preference.getValue()); + } + + public static boolean getIsShowCollectingAreasInGeneralSection(boolean local){ + CdmPreference preference = null; + + if (!local) { + preference = getPreferenceFromDB(PreferencePredicate.ShowCollectingAreasInGeneralSection); + } + if (preference == null){ + return getPreferenceStore().getBoolean(SHOW_COLLECTING_AREAS_IN_GENERAL_SECTION); + } + return Boolean.valueOf(preference.getValue()); + } + + public static boolean getIsShowTaxonAssociations(boolean local){ + CdmPreference preference = null; + + if (!local) { + preference = getPreferenceFromDB(PreferencePredicate.ShowTaxonAssociations); + } + if (preference == null){ + return getPreferenceStore().getBoolean(SHOW_TAXON_ASSOCIATIONS); + } + return Boolean.valueOf(preference.getValue()); + } + +// public static boolean getBioCaseProvider(boolean local){ +// CdmPreference preference = null; +// +// if (!local) { +// preference = getPreferenceFromDB(PreferencePredicate.BioCaseProvider); +// } +// if (preference == null){ +// return getPreferenceStore().getBoolean(SHOW_TAXON_ASSOCIATIONS); +// } +// return Boolean.valueOf(preference.getValue()); +// } + + + /** + *

+ * setAbcdConfigurator + *

+ * + * @param preferredConfiguration + * a {@link eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator} + * object. + */ + public static Abcd206ImportConfigurator getAbcdImportConfigurationPreference(boolean useLocal) { + + Abcd206ImportConfigurator config = Abcd206ImportConfigurator.NewInstance(null,null); + + if (useLocal){ + config.setAddIndividualsAssociationsSuchAsSpecimenAndObservations(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ADD_INDIVIDUALS_ASSOCIATIONS_SUCH_AS_SPECIMEN_AND_OBSERVATIONS)); + + config.setAddMediaAsMediaSpecimen(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ADD_MEDIA_AS_MEDIASPECIMEN)); + + config.setAllowReuseOtherClassifications(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ALLOW_REUSE_OTHER_CLASSIFICATIONS)); + config.setDeduplicateClassifications(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_CLASSIFICATIONS)); + config.setDeduplicateReferences(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_REFERENCES)); + + config.setGetSiblings(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DO_SIBLINGS)); + config.setIgnoreAuthorship(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_IGNORE_AUTHORSHIP)); + config.setIgnoreImportOfExistingSpecimen(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_IGNORE_IMPORT_OF_EXISTING_SPECIMEN)); + config.setMapUnitIdToAccessionNumber(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_ACCESSION_NUMBER)); + config.setMapUnitIdToBarcode(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_BARCODE)); + config.setMapUnitIdToCatalogNumber(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TOCATALOG_NUMBER)); + config.setMoveNewTaxaToDefaultClassification(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MOVE_NEW_TAXA_TO_DEFAULT_CLASSIFICATION)); + config.setOverwriteExistingSpecimens(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_OVERWRITE_EXISTING_SPECIMEN)); + config.setReuseExistingDescriptiveGroups(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_DESCRIPTIVE_GROUPS)); + config.setReuseExistingMetaData(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_META_DATA)); + config.setReuseExistingTaxaWhenPossible(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_TAXA_WHEN_POSSIBLE)); + return config; + + } + ICdmRepository controller; + controller = CdmStore.getCurrentApplicationConfiguration(); + PrefKey key = CdmPreference.NewKey(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.AbcdImportConfig); + CdmPreference preference = null; + if (controller == null){ + return null; + } + preference = controller.getPreferenceService().find(key); + if (preference == null){ + return config; + } else{ + String configString = preference.getValue(); + String[] configArray = configString.split(";"); + + for (String configItem: configArray){ + String[] keyValue = configItem.split(":"); + String keyString = keyValue[0]; + String valueString = keyValue[1]; + if (keyString.equals("ignoreImportOfExistingSpecimen")){ + config.setIgnoreImportOfExistingSpecimen(Boolean.valueOf(valueString)); + }else if (keyString.equals("addIndividualsAssociationsSuchAsSpecimenAndObservations")){ + config.setAddIndividualsAssociationsSuchAsSpecimenAndObservations(Boolean.valueOf(valueString)); + }else if (keyString.equals("reuseExistingTaxaWhenPossible")){ + config.setReuseExistingTaxaWhenPossible(Boolean.valueOf(valueString)); + }else if (keyString.equals("ignoreAuthorship")){ + config.setIgnoreAuthorship(Boolean.valueOf(valueString)); + }else if (keyString.equals("addMediaAsMediaSpecimen")){ + config.setAddMediaAsMediaSpecimen(Boolean.valueOf(valueString)); + }else if (keyString.equals("reuseExistingMetaData")){ + config.setReuseExistingMetaData(Boolean.valueOf(valueString)); + }else if (keyString.equals("reuseExistingDescriptiveGroups")){ + config.setReuseExistingDescriptiveGroups(Boolean.valueOf(valueString)); + }else if (keyString.equals("allowReuseOtherClassifications")){ + config.setAllowReuseOtherClassifications(Boolean.valueOf(valueString)); + }else if (keyString.equals("deduplicateReferences")){ + config.setDeduplicateReferences(Boolean.valueOf(valueString)); + }else if (keyString.equals("deduplicateClassifications")){ + config.setDeduplicateClassifications(Boolean.valueOf(valueString)); + }else if (keyString.equals("moveNewTaxaToDefaultClassification")){ + config.setMoveNewTaxaToDefaultClassification(Boolean.valueOf(valueString)); + }else if (keyString.equals("mapUnitIdToCatalogNumber")){ + config.setMapUnitIdToCatalogNumber(Boolean.valueOf(valueString)); + }else if (keyString.equals("mapUnitIdToAccessionNumber")){ + config.setMapUnitIdToAccessionNumber(Boolean.valueOf(valueString)); + }else if (keyString.equals("mapUnitIdToBarcode")){ + config.setMapUnitIdToBarcode(Boolean.valueOf(valueString)); + }else if (keyString.equals("overwriteExistingSpecimens")){ + config.setOverwriteExistingSpecimens(Boolean.valueOf(valueString)); + }else{ + logger.debug("This key of the abcd configurator needs to be added to the transformer: " + keyString); + } + + } + } + return config; + + + + } + + + }