id="eu.etaxonomy.taxeditor.editor.view.checklist.ChecklistEditor"
name="%editor.name.8">
</editor>
- <editor
- class="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor"
- default="false"
- id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor"
- name="Alignment Editor">
- </editor>
</extension>
<extension
- id="eu.etaxonomy.taxeditor.editor.molecular.PherogramView"
point="org.eclipse.ui.views">
<view
allowMultiple="false"
id="eu.etaxonomy.taxeditor.editor.view.validation.problems"
name="%view.name.6">
</view>
- <view
- allowMultiple="true"
- class="eu.etaxonomy.taxeditor.editor.molecular.PherogramViewPart"
- id="eu.etaxonomy.taxeditor.editor.molecular.PherogramView"
- name="PherogramView"
- restorable="true">
- </view>
</extension>
<!-- VALIDATION RELATED STUFF -->
<extension point="org.eclipse.core.resources.markers" name="%extension.name.0" id="eu.etaxonomy.taxeditor.markers.validationerror">
commandId="eu.etaxonomy.taxeditor.editor.command.new.name"
label="%command.label.46"
style="push">
+ <visibleWhen
+ checkEnabled="true">
+ <reference
+ definitionId="isCdmStoreConnected">
+ </reference>
+ </visibleWhen>
</command>
<command
commandId="eu.etaxonomy.taxeditor.editor.command.new.reference"
label="%command.label.47"
style="push">
+ <visibleWhen
+ checkEnabled="true">
+ <reference
+ definitionId="isCdmStoreConnected">
+ </reference>
+ </visibleWhen>
</command>
<command
commandId="eu.etaxonomy.taxeditor.editor.command.new.team"
label="%command.label.1"
style="push">
+ <visibleWhen
+ checkEnabled="true">
+ <reference
+ definitionId="isCdmStoreConnected">
+ </reference>
+ </visibleWhen>
</command>
<command
commandId="eu.etaxonomy.taxeditor.editor.command.new.person"
label="%command.label.2"
style="push">
+ <visibleWhen
+ checkEnabled="true">
+ <reference
+ definitionId="isCdmStoreConnected">
+ </reference>
+ </visibleWhen>
</command>
<separator
name="eu.etaxonomy.navigation.menu.new.separator2"
commandId="eu.etaxonomy.taxeditor.editor.command.new.specimen"
label="%command.label.3"
style="push">
+ <visibleWhen
+ checkEnabled="true">
+ <reference
+ definitionId="isCdmStoreConnected">
+ </reference>
+ </visibleWhen>
</command>
<separator
name="eu.etaxonomy.navigation.menu.new.separator3"
commandId="eu.etaxonomy.taxeditor.editor.command.new.datasource"
label="%command.label.48"
style="push">
+ <visibleWhen
+ checkEnabled="true">
+ <reference
+ definitionId="isCdmStoreConnected">
+ </reference>
+ </visibleWhen>
</command>
</menuContribution>
<menuContribution
name="org.eclipse.ui.views.showView.viewId"
value="eu.etaxonomy.taxeditor.editor.view.descriptive">
</parameter>
+ <visibleWhen
+ checkEnabled="true">
+ <reference
+ definitionId="isCdmStoreConnected">
+ </reference>
+ </visibleWhen>
</command>
<command
commandId="org.eclipse.ui.views.showView"
name="org.eclipse.ui.views.showView.viewId"
value="eu.etaxonomy.taxeditor.editor.view.media">
</parameter>
+ <visibleWhen
+ checkEnabled="true">
+ <reference
+ definitionId="isCdmStoreConnected">
+ </reference>
+ </visibleWhen>
</command>
<command
commandId="org.eclipse.ui.views.showView"
name="org.eclipse.ui.views.showView.viewId"
value="eu.etaxonomy.taxeditor.editor.view.concept">
</parameter>
+ <visibleWhen
+ checkEnabled="true">
+ <reference
+ definitionId="isCdmStoreConnected">
+ </reference>
+ </visibleWhen>
</command>
<command
commandId="org.eclipse.ui.views.showView"
value="eu.etaxonomy.taxeditor.editor.view.concept.graph">
</parameter>
<visibleWhen
- checkEnabled="false">
- <reference
- definitionId="isShowExperimentalFeatures">
- </reference>
+ checkEnabled="true">
+ <and>
+ <reference
+ definitionId="isShowExperimentalFeatures">
+ </reference>
+ <reference
+ definitionId="isCdmStoreConnected">
+ </reference>
+ </and>
</visibleWhen>
</command>
- <command
- commandId="eu.etaxonomy.taxeditor.editor.handler.OpenAlignmentEditor"
- label="Alignment Editor"
- style="push">
- </command>
</menuContribution>
<menuContribution
locationURI="menu:org.eclipse.ui.main.menu.navigate">
commandId="eu.etaxonomy.taxeditor.editor.command.openParent"
label="%command.label.8"
style="push">
+ <visibleWhen
+ checkEnabled="true">
+ <reference
+ definitionId="isCdmStoreConnected">
+ </reference>
+ </visibleWhen>
</command>
</menuContribution>
<menuContribution
label="%command.label.54"
style="push">
</command>
- <command
- commandId="eu.etaxonomy.taxeditor.editor.editSequence"
- label="Edit Sequence"
- style="push">
- <visibleWhen
- checkEnabled="true">
- <reference
- definitionId="isSequence">
- </reference>
- </visibleWhen>
- </command>
- <command
- commandId="eu.etaxonomy.taxeditor.editor.showPherogram"
- label="Show Pherogram"
- style="push">
- <visibleWhen
- checkEnabled="true">
- <reference
- definitionId="isSingleRead">
- </reference>
- </visibleWhen>
- </command>
<dynamic
class="eu.etaxonomy.taxeditor.editor.view.derivate.contextMenu.DerivateViewContextMenu"
id="eu.etaxonomy.taxeditor.editor.view.derivate.DerivateContextMenu">
</visibleWhen>
</command>
</menuContribution>
- <menuContribution
- allPopups="false"
- locationURI="menu:org.eclipse.ui.main.menu">
- <menu
- label="Alignment Editor">
- <command
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.loadPherogram"
- style="push">
- </command>
- <command
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.cutPherogramLeft"
- id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.cutPherogramLeft"
- name="Cut pherogram left">
- </command>
- <command
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.cutPherogramRight"
- id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.cutPherogramRight"
- style="push">
- </command>
- <command
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.reverseComplementRows"
- mnemonic="r"
- style="push">
- </command>
- <command
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.createConsensus"
- style="push">
- </command>
- <command
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.updateConsensus"
- style="push">
- </command>
- <visibleWhen
- checkEnabled="true">
- <with
- variable="activePartId">
- <equals
- value="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor">
- </equals>
- </with>
- </visibleWhen>
- </menu>
- </menuContribution>
- <menuContribution
- locationURI="toolbar:org.eclipse.ui.main.toolbar?after=eu.etaxonomy.taxeditor.navigation.search.toolbar">
- <toolbar
- id="eu.etaxonomy.taxeditor.editor.alignmentToolbar">
- <command
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.toggleInsertOverwrite"
- label="Toggle insert/overwrite"
- style="push">
- <visibleWhen
- checkEnabled="true">
- <with
- variable="activePartId">
- <equals
- value="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor">
- </equals>
- </with>
- </visibleWhen>
- </command>
- <command
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.toggleLeftRightInsertion"
- icon="icons/pherogram-insert-left-16x16.png"
- style="push">
- <visibleWhen
- checkEnabled="false">
- <with
- variable="activePartId">
- <equals
- value="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor">
- </equals>
- </with>
- </visibleWhen>
- </command>
- </toolbar>
- </menuContribution>
<menuContribution
allPopups="false"
name="org.eclipse.ui.views.showView.viewId"
value="eu.etaxonomy.taxeditor.editor.view.validation.problems">
</parameter>
+ <visibleWhen
+ checkEnabled="true">
+ <reference
+ definitionId="isCdmStoreConnected">
+ </reference>
+ </visibleWhen>
</command>
</menuContribution>
</extension>
class="eu.etaxonomy.taxeditor.editor.handler.OpenChecklistEditorHandler"
commandId="eu.etaxonomy.taxeditor.editor.handler.OpenChecklistEditorHandler">
</handler>
- <handler
- class="eu.etaxonomy.taxeditor.editor.handler.LoadPherogramHandler"
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.loadPherogram">
- <activeWhen>
- <with
- variable="activePartId">
- <equals
- value="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor">
- </equals>
- </with>
- </activeWhen>
- </handler>
<handler
class="eu.etaxonomy.taxeditor.editor.view.derivate.handler.DeleteDerivateHandler"
commandId="eu.etaxonomy.taxeditor.editor.view.derivate.command.delete">
class="eu.etaxonomy.taxeditor.editor.view.descriptive.handler.ToggleShowOnlyIndividualAssociationsHandler"
commandId="eu.etaxonomy.taxeditor.editor.handler.showOnlyIndividualAssociations">
</handler>
- <handler
- class="eu.etaxonomy.taxeditor.editor.handler.alignmenteditor.ToggleInsertOverwriteHandler"
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.toggleInsertOverwrite">
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.editor.handler.alignmenteditor.ToggleLeftRightInsertionHandler"
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.toggleLeftRightInsertion">
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.editor.handler.alignmenteditor.CutPherogramLeftHandler"
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.cutPherogramLeft">
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.editor.handler.alignmenteditor.CutPherogramRightHandler"
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.cutPherogramRight">
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.editor.handler.alignmenteditor.ReverseComplementHandler"
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.reverseComplementRows">
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.editor.handler.alignmenteditor.CreateConsensusSequenceHandler"
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.createConsensus">
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.editor.handler.alignmenteditor.UpdateConsensusSequenceHandler"
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.updateConsensus">
- </handler>
</extension>
<extension
name="%extension.name"
id="eu.etaxonomy.taxeditor.editor.command.new.datasource"
name="%command.name.39">
</command>
- <command
- defaultHandler="eu.etaxonomy.taxeditor.editor.handler.OpenAlignmentEditorHandler"
- id="eu.etaxonomy.taxeditor.editor.handler.OpenAlignmentEditor"
- name="Open Alignment Editor">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.loadPherogram"
- name="Load Pherogram">
- </command>
<command
id="eu.etaxonomy.taxeditor.editor.handler.showOnlyIndividualAssociations"
name="%command.name.41">
</command>
- <command
- id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.toggleInsertOverwrite"
- name="Toggle insert/overwrite">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.toggleLeftRightInsertion"
- name="Toggle left/right insertion in base call sequence">
- </command>
<command
defaultHandler="eu.etaxonomy.taxeditor.editor.handler.OpenTaxonEditorHandler"
id="eu.etaxonomy.taxeditor.editor.openTaxonEditor"
id="eu.etaxonomy.taxeditor.description.commands.moveDescriptionElements"
name="%command.name.12">
</command>
- <command
- defaultHandler="eu.etaxonomy.taxeditor.editor.handler.EditSequenceHandler"
- id="eu.etaxonomy.taxeditor.editor.editSequence"
- name="Edit Sequence">
- </command>
- <command
- defaultHandler="eu.etaxonomy.taxeditor.editor.handler.ShowPherogramHandler"
- id="eu.etaxonomy.taxeditor.editor.showPherogram"
- name="Show Pherogram">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.cutPherogramLeft"
- name="Cut pherogram left">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.cutPherogramRight"
- name="Cut pherogram right">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.reverseComplementRows"
- name="Reverse complement selected rows">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.createConsensus"
- name="(Re)create consensus sequence">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.updateConsensus"
- name="Update consensus sequence">
- </command>
</extension>
<extension
point="org.eclipse.core.expressions.definitions">
</test>
</with>
</definition>
- <definition
- id="isSequence">
- <with
- variable="selection">
- <test
- property="eu.etaxonomy.taxeditor.editor.handler.SpecimenPropertyTester.isSequence">
- </test>
- </with>
- </definition>
- <definition
- id="isSingleRead">
- <with
- variable="selection">
- <test
- property="eu.etaxonomy.taxeditor.editor.handler.SpecimenPropertyTester.isSingleRead">
- </test>
- </with>
- </definition>
</extension>
<extension
point="org.eclipse.core.expressions.propertyTesters">
properties="isGroupEditor"
type="eu.etaxonomy.taxeditor.bulkeditor.BulkEditor">
</propertyTester>
- <propertyTester
- class="eu.etaxonomy.taxeditor.editor.handler.SpecimenPropertyTester"
- id="eu.etaxonomy.taxeditor.editor.handler.SpecimenPropertyTester"
- namespace="eu.etaxonomy.taxeditor.editor.handler.SpecimenPropertyTester"
- properties="isSequence,isSingleRead"
- type="org.eclipse.jface.viewers.IStructuredSelection">
- </propertyTester>
</extension>
- <extension
+ <extension
point="org.eclipse.ui.bindings">
<scheme
description="%scheme.description"
id="eu.etaxonomy.taxeditor.bindings.scheme.default"
name="%scheme.name">
</scheme>
- <key
- commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.loadPherogram"
- schemeId="eu.etaxonomy.taxeditor.bindings.scheme.default"
- sequence="M1+O">
- </key>
</extension>
<extension
point="org.eclipse.ui.importWizards">