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merge from trunk
[taxeditor.git] / .gitattributes
diff --git a/.gitattributes b/.gitattributes
index d0074abc6023627745cb94d697dc906735c986be..0361e5956d45bedee638dc6614e58354d81c2137 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -222,6 +222,8 @@ eu.etaxonomy.taxeditor.cdmlib/lib/jboss-logging-3.1.3.GA.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jboss-transaction-api_1.1_spec-1.0.0.Final.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jdbc4-2.0.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jdom-1.1.3.jar -text
+eu.etaxonomy.taxeditor.cdmlib/lib/jena-core-2.11.2.jar -text
+eu.etaxonomy.taxeditor.cdmlib/lib/jena-iri-1.0.2.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/joda-time-2.1.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/json-lib-2.4-jdk15.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jsr250-api-1.0.jar -text
@@ -341,14 +343,6 @@ eu.etaxonomy.taxeditor.cdmlib/src/main/resources/eu/etaxonomy/cdm/localApplicati
 eu.etaxonomy.taxeditor.cdmlib/src/main/resources/eu/etaxonomy/cdm/remotingApplicationContext.xml -text
 eu.etaxonomy.taxeditor.cdmlib/src/main/resources/eu/etaxonomy/cdm/remoting_persistence_security.xml -text
 eu.etaxonomy.taxeditor.cdmlib/src/main/resources/eu/etaxonomy/cdm/remoting_services_security.xml -text
-eu.etaxonomy.taxeditor.cdmlib/src/test/java/eu/etaxonomy/taxeditor/remoting/CdmApplicationRemoteControllerTest.java -text
-eu.etaxonomy.taxeditor.cdmlib/src/test/java/eu/etaxonomy/taxeditor/remoting/CdmPersistentRemoteSourceTest.java -text
-eu.etaxonomy.taxeditor.cdmlib/src/test/java/eu/etaxonomy/taxeditor/remoting/CdmRemoteSourceTest.java -text
-eu.etaxonomy.taxeditor.cdmlib/src/test/java/eu/etaxonomy/taxeditor/remoting/CdmServiceCacherTest.java -text
-eu.etaxonomy.taxeditor.cdmlib/src/test/java/eu/etaxonomy/taxeditor/remoting/HttpInvokerServicesTest.java -text
-eu.etaxonomy.taxeditor.cdmlib/src/test/java/eu/etaxonomy/taxeditor/remoting/RemoteApplicationConfigurationTest.java -text
-eu.etaxonomy.taxeditor.cdmlib/src/test/java/eu/etaxonomy/taxeditor/remoting/RemoteLazyLoadingTest.java -text
-eu.etaxonomy.taxeditor.cdmlib/src/test/java/eu/etaxonomy/taxeditor/remoting/RemotePersistentCollectionTest.java -text
 eu.etaxonomy.taxeditor.cdmlib/src/test/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
 eu.etaxonomy.taxeditor.editor/.classpath -text
 eu.etaxonomy.taxeditor.editor/.project -text
@@ -542,6 +536,8 @@ eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/d
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/derivate/contextMenu/CreateDerivateContextMenu.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/derivate/contextMenu/DerivateViewContextMenu.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/derivate/contextMenu/SingleReadSequenceContextMenu.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/derivate/handler/DeleteDerivateHandler.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/derivate/operation/DeleteDerivateOperation.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/descriptive/DescriptionElementDragListener.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/descriptive/DescriptionElementDropAdapter.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/descriptive/DescriptionElementTransfer.java -text
@@ -614,10 +610,12 @@ eu.etaxonomy.taxeditor.editor/src/test/java/eu/etaxonomy/taxeditor/editor/name/o
 eu.etaxonomy.taxeditor.editor/src/test/java/eu/etaxonomy/taxeditor/editor/name/operation/MoveTaxonOperationTest.java -text
 eu.etaxonomy.taxeditor.editor/src/test/java/eu/etaxonomy/taxeditor/editor/name/operation/SwapSynonymAndAcceptedOperationTest.java -text
 eu.etaxonomy.taxeditor.feature.platform/.project -text
+eu.etaxonomy.taxeditor.feature.platform/LICENSE.TXT -text
 eu.etaxonomy.taxeditor.feature.platform/build.properties -text
 eu.etaxonomy.taxeditor.feature.platform/feature.xml -text
 eu.etaxonomy.taxeditor.feature.platform/pom.xml -text
 eu.etaxonomy.taxeditor.feature/.project -text
+eu.etaxonomy.taxeditor.feature/LICENSE.TXT -text
 eu.etaxonomy.taxeditor.feature/build.properties -text
 eu.etaxonomy.taxeditor.feature/feature.xml -text
 eu.etaxonomy.taxeditor.feature/pom.xml -text
@@ -1006,6 +1004,81 @@ eu.etaxonomy.taxeditor.printpublisher/src/main/java/eu/etaxonomy/taxeditor/print
 eu.etaxonomy.taxeditor.printpublisher/src/main/java/eu/etaxonomy/taxeditor/printpublisher/wizard/SelectServiceWizardPage.java -text
 eu.etaxonomy.taxeditor.printpublisher/src/main/java/eu/etaxonomy/taxeditor/printpublisher/wizard/SelectStylesheetWizardPage.java -text
 eu.etaxonomy.taxeditor.printpublisher/src/main/java/eu/etaxonomy/taxeditor/printpublisher/wizard/SelectTaxaWizardPage.java -text
+eu.etaxonomy.taxeditor.remoting/.classpath -text
+eu.etaxonomy.taxeditor.remoting/.project -text
+eu.etaxonomy.taxeditor.remoting/.settings/org.eclipse.jdt.core.prefs -text
+eu.etaxonomy.taxeditor.remoting/.settings/org.eclipse.pde.core.prefs -text
+eu.etaxonomy.taxeditor.remoting/.svnignore -text
+eu.etaxonomy.taxeditor.remoting/META-INF/MANIFEST.MF -text
+eu.etaxonomy.taxeditor.remoting/build.properties -text
+eu.etaxonomy.taxeditor.remoting/lib/.svnignore -text
+eu.etaxonomy.taxeditor.remoting/pom.xml -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationRemoteConfiguration.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationRemoteController.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/CachedCommonServiceImpl.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/CdmClientCacheException.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/CdmEntityCacheKey.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/CdmEntityCachingUtils.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/CdmModelCacher.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/CdmModelFieldPropertyFromClass.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/CdmRemoteCacheManager.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/CdmServiceCacher.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/CdmTransientEntityCacher.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/ICachedCommonService.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/remote/CdmPersistentRemoteSource.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/remote/CdmRemoteSource.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/remote/CdmRemoteSourceBase.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/remote/CdmRemoteSourceException.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/remote/ICdmRemoteSource.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/taxeditor/remoting/CdmRemotingException.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/taxeditor/remoting/RemotingTestPluginActivator.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/taxeditor/remoting/session/CdmClientSessionException.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/taxeditor/remoting/session/CdmEntitySession.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/taxeditor/remoting/session/CdmEntitySessionManager.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/taxeditor/remoting/session/ISessionEventListener.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/org/hibernate/collection/internal/AbstractPersistentCollection.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/java/org/hibernate/proxy/AbstractLazyInitializer.java -text
+eu.etaxonomy.taxeditor.remoting/src/main/resources/cdmlib-ehcache.xml -text
+eu.etaxonomy.taxeditor.remoting/src/main/resources/etc/jetty/.svnignore -text
+eu.etaxonomy.taxeditor.remoting/src/main/resources/etc/jetty/jetty-runner-9.2.3.v20140905.jar -text
+eu.etaxonomy.taxeditor.remoting/src/main/resources/etc/jetty/start-9.2.3.v20140905.jar -text
+eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/config.properties -text
+eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/httpInvokerServiceClients.xml -text
+eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/localApplicationContext.xml -text
+eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/mappings/hibernate.cfg.xml -text
+eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/remotingApplicationContext.xml -text
+eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/remoting_persistence_security.xml -text
+eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/remoting_services_security.xml -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/cdm/api/cache/CdmClientCachingTest.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/cdm/api/cache/CdmModelGetMethodCacherTest.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/cdm/polytomouskey/PolytomousKeyTest.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/exception/CDMServerException.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/BaseRemotingTest.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/CDMServer.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/CdmPersistentRemoteSourceTest.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/CdmRemoteSourceTest.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/CdmServerTest.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/CdmServerTestManager.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/HttpInvokerServicesTest.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/lazyloading/AbstractLazyInitializerTest.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/lazyloading/CdmEntityCacherTest.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/lazyloading/CdmServiceCacherTest.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/lazyloading/RemoteLazyLoadingTest.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/lazyloading/RemotePersistentCollectionTest.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/remoting/session/MockSessionOwner.java -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/cdmlib-ehcache.xml -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/datasources.xml -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/cdm/api/cache/CdmClientCachingTest.xml -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/cdm/polytomouskey/PolytomousKeyTest.readPolytmousKeyData.xml -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/cdm/polytomouskey/PolytomousKeyTest.xml -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/cdm/testRemotingApplicationContext.xml -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/taxeditor/lazyloading/AbstractLazyInitializerTest.xml -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/taxeditor/lazyloading/CdmEntityCacherTest.xml -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/h2/cdmTest.h2.db -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/h2/cdmTest.trace.db -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/log4j.properties -text
+eu.etaxonomy.taxeditor.remoting/src/test/resources/unitils.properties -text
 eu.etaxonomy.taxeditor.store/.classpath -text
 eu.etaxonomy.taxeditor.store/.project -text
 eu.etaxonomy.taxeditor.store/META-INF/MANIFEST.MF -text
@@ -1265,7 +1338,7 @@ eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/FeatureN
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/ICdmEditorHandle.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/IContextListener.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/IDataChangeBehavior.java -text
-eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/IDirtyMarkableSelectionProvider.java -text
+eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/IDirtyMarkable.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/IElementHasDetails.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/IPartChangeListener.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/IPartContentHasDetails.java -text
@@ -1635,6 +1708,7 @@ eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occ
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/derivedUnit/PreservedSpecimenGeneralDetailElement.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/derivedUnit/PreservedSpecimenGeneralDetailSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/derivedUnit/PreservedSpecimenSourceCollectionDetailSection.java -text
+eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/AbstractSampleDesignationDetailSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/AbstractUnboundEntityCollectionSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/AmplificationCloningDetailElement.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/AmplificationCloningDetailSection.java -text
@@ -1644,11 +1718,16 @@ eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occ
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/AmplificationGeneralDetailSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/AmplificationPrimerDetailElement.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/AmplificationPrimerDetailSection.java -text
+eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/CurrentSampleDesignationDetailSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/DnaQualityDetailElement.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/DnaQualityDetailSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/DnaSampleGeneralDetailElement.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/DnaSampleGeneralDetailSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/PrimerGeneralDetailElement.java -text
+eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SampleDesignationDetailElement.java -text
+eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SampleDesignationDetailSection.java -text
+eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SampleDesignationHistoryDetailSection.java -text
+eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SampleDesignationTextDetailElement.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SequenceContigFileCollectionDetailSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SequenceGeneralDetailElement.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SequenceGeneralDetailSection.java -text