reintegrated taxeditor-3.4 branch into trunk

[taxeditor.git] / .gitattributes

diff --git a/.gitattributes b/.gitattributes
index 27491be824972b6cf0ecb342105f03a1ca3860a8..7955a88cd84bc5e97af2e4ead816ffb273b0a174 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -222,8 +222,8 @@ eu.etaxonomy.taxeditor.cdmlib/lib/jboss-logging-3.1.3.GA.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jboss-transaction-api_1.1_spec-1.0.0.Final.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jdbc4-2.0.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jdom-1.1.3.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/jena-core-2.12.1-SNAPSHOT.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/jena-iri-1.1.1-SNAPSHOT.jar -text
+eu.etaxonomy.taxeditor.cdmlib/lib/jena-core-2.11.2.jar -text
+eu.etaxonomy.taxeditor.cdmlib/lib/jena-iri-1.0.2.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/joda-time-2.1.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/json-lib-2.4-jdk15.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jsr250-api-1.0.jar -text
@@ -536,6 +536,8 @@ eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/d
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/derivate/contextMenu/CreateDerivateContextMenu.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/derivate/contextMenu/DerivateViewContextMenu.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/derivate/contextMenu/SingleReadSequenceContextMenu.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/derivate/handler/DeleteDerivateHandler.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/derivate/operation/DeleteDerivateOperation.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/descriptive/DescriptionElementDragListener.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/descriptive/DescriptionElementDropAdapter.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/descriptive/DescriptionElementTransfer.java -text
@@ -608,10 +610,12 @@ eu.etaxonomy.taxeditor.editor/src/test/java/eu/etaxonomy/taxeditor/editor/name/o
 eu.etaxonomy.taxeditor.editor/src/test/java/eu/etaxonomy/taxeditor/editor/name/operation/MoveTaxonOperationTest.java -text
 eu.etaxonomy.taxeditor.editor/src/test/java/eu/etaxonomy/taxeditor/editor/name/operation/SwapSynonymAndAcceptedOperationTest.java -text
 eu.etaxonomy.taxeditor.feature.platform/.project -text
+eu.etaxonomy.taxeditor.feature.platform/LICENSE.TXT -text
 eu.etaxonomy.taxeditor.feature.platform/build.properties -text
 eu.etaxonomy.taxeditor.feature.platform/feature.xml -text
 eu.etaxonomy.taxeditor.feature.platform/pom.xml -text
 eu.etaxonomy.taxeditor.feature/.project -text
+eu.etaxonomy.taxeditor.feature/LICENSE.TXT -text
 eu.etaxonomy.taxeditor.feature/build.properties -text
 eu.etaxonomy.taxeditor.feature/feature.xml -text
 eu.etaxonomy.taxeditor.feature/pom.xml -text
@@ -1000,50 +1004,6 @@ eu.etaxonomy.taxeditor.printpublisher/src/main/java/eu/etaxonomy/taxeditor/print
 eu.etaxonomy.taxeditor.printpublisher/src/main/java/eu/etaxonomy/taxeditor/printpublisher/wizard/SelectServiceWizardPage.java -text
 eu.etaxonomy.taxeditor.printpublisher/src/main/java/eu/etaxonomy/taxeditor/printpublisher/wizard/SelectStylesheetWizardPage.java -text
 eu.etaxonomy.taxeditor.printpublisher/src/main/java/eu/etaxonomy/taxeditor/printpublisher/wizard/SelectTaxaWizardPage.java -text
-eu.etaxonomy.taxeditor.remoting/.classpath -text
-eu.etaxonomy.taxeditor.remoting/.project -text
-eu.etaxonomy.taxeditor.remoting/.settings/org.eclipse.jdt.core.prefs -text
-eu.etaxonomy.taxeditor.remoting/.settings/org.eclipse.pde.core.prefs -text
-eu.etaxonomy.taxeditor.remoting/META-INF/MANIFEST.MF -text
-eu.etaxonomy.taxeditor.remoting/build.properties -text
-eu.etaxonomy.taxeditor.remoting/pom.xml -text
-eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationRemoteConfiguration.java -text
-eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationRemoteController.java -text
-eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/api/cache/CdmServiceCacher.java -text
-eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/remote/CdmPersistentRemoteSource.java -text
-eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/remote/CdmRemoteSource.java -text
-eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/remote/CdmRemoteSourceBase.java -text
-eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/remote/CdmRemoteSourceException.java -text
-eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/cdm/remote/ICdmRemoteSource.java -text
-eu.etaxonomy.taxeditor.remoting/src/main/java/eu/etaxonomy/taxeditor/remoting/RemotingTestPluginActivator.java -text
-eu.etaxonomy.taxeditor.remoting/src/main/java/org/hibernate/collection/internal/AbstractPersistentCollection.java -text
-eu.etaxonomy.taxeditor.remoting/src/main/java/org/hibernate/proxy/AbstractLazyInitializer.java -text
-eu.etaxonomy.taxeditor.remoting/src/main/resources/etc/jetty/jetty-runner-9.2.3.v20140905.jar -text
-eu.etaxonomy.taxeditor.remoting/src/main/resources/etc/jetty/start-9.2.3.v20140905.jar -text
-eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/config.properties -text
-eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/httpInvokerServiceClients.xml -text
-eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/localApplicationContext.xml -text
-eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/remotingApplicationContext.xml -text
-eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/remoting_persistence_security.xml -text
-eu.etaxonomy.taxeditor.remoting/src/main/resources/eu/etaxonomy/cdm/remoting_services_security.xml -text
-eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/exception/CDMServerException.java -text
-eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/BaseRemotingTest.java -text
-eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/CDMServer.java -text
-eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/CdmPersistentRemoteSourceTest.java -text
-eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/CdmRemoteSourceTest.java -text
-eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/CdmServerTest.java -text
-eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/HttpInvokerServicesTest.java -text
-eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/lazyloading/AbstractLazyInitializerTest.java -text
-eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/lazyloading/CdmServiceCacherTest.java -text
-eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/lazyloading/RemoteLazyLoadingTest.java -text
-eu.etaxonomy.taxeditor.remoting/src/test/java/eu/etaxonomy/taxeditor/lazyloading/RemotePersistentCollectionTest.java -text
-eu.etaxonomy.taxeditor.remoting/src/test/resources/datasources.xml -text
-eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
-eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/cdm/testRemotingApplicationContext.xml -text
-eu.etaxonomy.taxeditor.remoting/src/test/resources/eu/etaxonomy/taxeditor/lazyloading/AbstractLazyInitializerTest.xml -text
-eu.etaxonomy.taxeditor.remoting/src/test/resources/h2/cdmTest.h2.db -text
-eu.etaxonomy.taxeditor.remoting/src/test/resources/h2/cdmTest.trace.db -text
-eu.etaxonomy.taxeditor.remoting/src/test/resources/unitils.properties -text
 eu.etaxonomy.taxeditor.store/.classpath -text
 eu.etaxonomy.taxeditor.store/.project -text
 eu.etaxonomy.taxeditor.store/META-INF/MANIFEST.MF -text
@@ -1303,7 +1263,7 @@ eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/FeatureN
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/ICdmEditorHandle.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/IContextListener.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/IDataChangeBehavior.java -text
-eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/IDirtyMarkableSelectionProvider.java -text
+eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/IDirtyMarkable.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/IElementHasDetails.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/IPartChangeListener.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/IPartContentHasDetails.java -text
@@ -1673,6 +1633,7 @@ eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occ
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/derivedUnit/PreservedSpecimenGeneralDetailElement.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/derivedUnit/PreservedSpecimenGeneralDetailSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/derivedUnit/PreservedSpecimenSourceCollectionDetailSection.java -text
+eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/AbstractSampleDesignationDetailSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/AbstractUnboundEntityCollectionSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/AmplificationCloningDetailElement.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/AmplificationCloningDetailSection.java -text
@@ -1682,11 +1643,16 @@ eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occ
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/AmplificationGeneralDetailSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/AmplificationPrimerDetailElement.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/AmplificationPrimerDetailSection.java -text
+eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/CurrentSampleDesignationDetailSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/DnaQualityDetailElement.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/DnaQualityDetailSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/DnaSampleGeneralDetailElement.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/DnaSampleGeneralDetailSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/PrimerGeneralDetailElement.java -text
+eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SampleDesignationDetailElement.java -text
+eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SampleDesignationDetailSection.java -text
+eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SampleDesignationHistoryDetailSection.java -text
+eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SampleDesignationTextDetailElement.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SequenceContigFileCollectionDetailSection.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SequenceGeneralDetailElement.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SequenceGeneralDetailSection.java -text