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Merge branch 'hotfix/3.12.4' into develop
[taxeditor.git] / eu.etaxonomy.taxeditor.editor / plugin.xml
diff --git a/eu.etaxonomy.taxeditor.editor/plugin.xml b/eu.etaxonomy.taxeditor.editor/plugin.xml
index 7cf0948326fe2165c4c2c5a2ac01facb141dd4a9..eb5070d240c4b7d07f9e684db1852bc657e7df43 100644 (file)
--- a/eu.etaxonomy.taxeditor.editor/plugin.xml
+++ b/eu.etaxonomy.taxeditor.editor/plugin.xml
@@ -507,6 +507,9 @@
                         <reference
                               definitionId="isMisapplication">
                         </reference>
+                        <reference
+                              definitionId="isHomotypicSynonymOfAcceptedTaxon">
+                        </reference>
                      </or>
                   </not>
                </visibleWhen>
@@ -775,8 +778,86 @@
       </menuContribution>
       <menuContribution
             locationURI="popup:eu.etaxonomy.taxeditor.editor.view.derivate.DerivateView">
+         <separator
+               name="eu.etaxonomy.taxeditor.editor.separator4"
+               visible="true">
+         </separator>
+         <dynamic
+               class="eu.etaxonomy.taxeditor.view.CdmViewerContextMenu"
+               id="eu.etaxonomy.taxeditor.editor.derivativeEditor.CdmViewerContextMenu">
+         </dynamic>
+         <dynamic
+               class="eu.etaxonomy.taxeditor.editor.view.derivate.contextMenu.DerivateViewContextMenu"
+               id="eu.etaxonomy.taxeditor.editor.view.derivate.DerivateContextMenu">
+         </dynamic>
+         <command
+               commandId="eu.etaxonomy.taxeditor.editor.derivative.toggleLinkWithTaxonSelection"
+               label="Link with taxon selection"
+               style="push">
+            <visibleWhen
+                  checkEnabled="true">
+               <not>
+                  <reference
+                        definitionId="isDerivativeEditorLinkedToTaxonSelection">
+                  </reference>
+               </not>
+            </visibleWhen>
+         </command>
+         <command
+               commandId="eu.etaxonomy.taxeditor.editor.derivative.toggleLinkWithTaxonSelection"
+               label="Unlink from taxon selection"
+               style="push">
+            <visibleWhen
+                  checkEnabled="true">
+               <reference
+                     definitionId="isDerivativeEditorLinkedToTaxonSelection">
+               </reference>
+            </visibleWhen>
+         </command>
+         <separator
+               name="eu.etaxonomy.taxeditor.editor.separator3"
+               visible="true">
+         </separator>
          <command
-               commandId="eu.etaxonomy.taxeditor.editor.derivate.delete"
+               commandId="eu.etaxonomy.taxeditor.editor.derivative.reuseSingleRead"
+               id="eu.etaxonomy.taxeditor.editor.derivative.reuseSingleReadMenuItem"
+               label="Reuse single read here"
+               style="push">
+            <visibleWhen
+                  checkEnabled="true">
+               <reference
+                     definitionId="isSingleReadReusableHere">
+               </reference>
+            </visibleWhen>
+         </command>
+         <command
+               commandId="eu.etaxonomy.taxeditor.editor.derivative.copySingleReadToClipBoard"
+               label="Reuse for other sequence"
+               style="push">
+            <visibleWhen
+                  checkEnabled="true">
+               <reference
+                     definitionId="isSingleRead">
+               </reference>
+            </visibleWhen>
+         </command>
+         <command
+               commandId="eu.etaxonomy.taxeditor.editor.derivative.removeSingleReadFromSequence"
+               label="Remove from this sequence"
+               style="push">
+            <visibleWhen
+                  checkEnabled="true">
+               <reference
+                     definitionId="isSingleReadReused">
+               </reference>
+            </visibleWhen>
+         </command>
+         <separator
+               name="eu.etaxonomy.taxeditor.editor.separator7"
+               visible="true">
+         </separator>
+         <command
+               commandId="org.eclipse.ui.edit.delete"
                label="%command.label.52"
                style="push">
          </command>
@@ -786,10 +867,6 @@
                label="%command.label.54"
                style="push">
          </command>
-         <dynamic
-               class="eu.etaxonomy.taxeditor.editor.view.derivate.contextMenu.DerivateViewContextMenu"
-               id="eu.etaxonomy.taxeditor.editor.view.derivate.DerivateContextMenu">
-         </dynamic>
       </menuContribution>
       <menuContribution
             locationURI="popup:eu.etaxonomy.taxeditor.editor.view.dataimport.SpecimenImportEditor">
@@ -1120,7 +1197,7 @@
       </handler>
       <handler
             class="eu.etaxonomy.taxeditor.editor.view.derivate.handler.DeleteDerivateHandler"
-            commandId="eu.etaxonomy.taxeditor.editor.view.derivate.command.delete">
+            commandId="org.eclipse.ui.edit.delete">
          <activeWhen>
             <with
                   variable="activePartId">
@@ -1152,6 +1229,18 @@
             </reference>
          </activeWhen>
       </handler>
+      <handler
+            class="eu.etaxonomy.taxeditor.handler.defaultHandler.OpenReferencingObjectsView"
+            commandId="eu.etaxonomy.taxeditor.openReferencingObjectsView">
+         <activeWhen>
+            <with
+                  variable="activePartId">
+               <equals
+                     value="eu.etaxonomy.taxeditor.editor.view.derivate.DerivateView">
+               </equals>
+            </with>
+         </activeWhen>
+      </handler>
    </extension>
    <extension
          name="%extension.name"
@@ -1453,21 +1542,27 @@
             name="%command.name.41">
       </command>
       <command
-            defaultHandler="eu.etaxonomy.taxeditor.editor.handler.OpenTaxonEditorHandler"
-            id="eu.etaxonomy.taxeditor.editor.openTaxonEditor"
+            defaultHandler="eu.etaxonomy.taxeditor.editor.handler.defaultHandler.DefaultOpenTaxonEditorForTaxonHandler"
+            id="eu.etaxonomy.taxeditor.editor.openTaxonEditorForTaxon"
             name="%command.name.42">
          <commandParameter
-               id="eu.etaxonomy.taxeditor.editor.taxonParameter"
+               id="eu.etaxonomy.taxeditor.editor.openTaxonEditorForTaxon.uuid"
                name="%commandParameter.name"
                optional="false"
-               typeId="eu.etaxonomy.taxeditor.editor.taxonParameterType">
+               typeId="eu.etaxonomy.taxeditor.uuidParameterType">
+         </commandParameter>
+      </command>
+      <command
+            defaultHandler="eu.etaxonomy.taxeditor.editor.handler.defaultHandler.DefaultOpenTaxonEditorForTaxonNodeHandler"
+            id="eu.etaxonomy.taxeditor.editor.openTaxonEditorForTaxonNode"
+            name="Open Taxon Editor for taxonnode">
+         <commandParameter
+               id="eu.etaxonomy.taxeditor.editor.openTaxonEditorForTaxonNode.uuid"
+               name="taxon node uuid"
+               optional="true"
+               typeId="eu.etaxonomy.taxeditor.uuidParameterType">
          </commandParameter>
       </command>
-      <commandParameterType
-            converter="eu.etaxonomy.taxeditor.editor.handler.TaxonParameterConverter"
-            id="eu.etaxonomy.taxeditor.editor.taxonParameterType"
-            type="eu.etaxonomy.cdm.model.taxon.TaxonBase">
-      </commandParameterType>
       <command
             defaultHandler="eu.etaxonomy.taxeditor.editor.view.derivate.handler.DeleteDerivateHandler"
             id="eu.etaxonomy.taxeditor.editor.derivate.deepDelete"
@@ -1490,28 +1585,34 @@
             defaultHandler="eu.etaxonomy.taxeditor.editor.handler.OpenDerivateViewHandler"
             id="eu.etaxonomy.taxeditor.editor.openSpecimenEditor"
             name="Open Derivative Editor">
-         <commandParameter
-               id="eu.etaxonomy.taxeditor.specimenUuidParameter"
-               name="Specimen UUID parameter"
-               optional="true"
-               typeId="eu.etaxonomy.taxeditor.specimenUuidParameterType">
-         </commandParameter>
       </command>
       <command
             defaultHandler="eu.etaxonomy.taxeditor.editor.view.derivate.handler.ListenToSelectionChangeHandler"
             id="eu.etaxonomy.taxeditor.editor.derivative.listenToSelectionChange"
             name="Link with taxon selection">
       </command>
+      <command
+            defaultHandler="eu.etaxonomy.taxeditor.editor.view.derivate.handler.SingleReadHandler"
+            id="eu.etaxonomy.taxeditor.editor.derivative.copySingleReadToClipBoard"
+            name="Copy SingleRead to clipboard">
+      </command>
+      <command
+            defaultHandler="eu.etaxonomy.taxeditor.editor.view.derivate.handler.SingleReadHandler"
+            id="eu.etaxonomy.taxeditor.editor.derivative.reuseSingleRead"
+            name="Reuse SingleRead">
+      </command>
+      <command
+            defaultHandler="eu.etaxonomy.taxeditor.editor.view.derivate.handler.SingleReadHandler"
+            id="eu.etaxonomy.taxeditor.editor.derivative.removeSingleReadFromSequence"
+            name="Remove SingleRead from sequence">
+      </command>
+      <command
+            defaultHandler="eu.etaxonomy.taxeditor.editor.view.derivate.handler.ToggleLinkWithTaxonSelectionHandler"
+            id="eu.etaxonomy.taxeditor.editor.derivative.toggleLinkWithTaxonSelection"
+            name="Toggle link with taxon selection">
+      </command>
         
    </extension>
-   <extension
-         point="org.eclipse.ui.commands">
-      <commandParameterType
-            converter="eu.etaxonomy.taxeditor.handler.UuidParameterConverter"
-            id="eu.etaxonomy.taxeditor.specimenUuidParameterType"
-            type="java.util.UUID">
-      </commandParameterType>
-   </extension>
    <extension
          point="org.eclipse.core.expressions.definitions">
       <definition
@@ -1532,6 +1633,15 @@
             </test>
          </with>
       </definition>
+      <definition
+            id="isNotHomotypicSynonymOfAcceptedTaxon">
+         <with
+               variable="selection">
+            <test
+                  property="eu.etaxonomy.taxeditor.editor.name.propertyTester.isHomotypicSynonymOfAcceptedTaxon">
+            </test>
+         </with>
+      </definition>
       <definition
             id="isSynonym">
          <with
@@ -1700,6 +1810,33 @@
             </test>
          </with>
       </definition>
+      <definition
+            id="isSingleReadReusableHere">
+         <with
+               variable="selection">
+            <test
+                  property="eu.etaxonomy.taxeditor.editor.handler.SpecimenPropertyTester.isSingleReadReusableHere">
+            </test>
+         </with>
+      </definition>
+      <definition
+            id="isSingleReadReused">
+         <with
+               variable="selection">
+            <test
+                  property="eu.etaxonomy.taxeditor.editor.handler.SpecimenPropertyTester.isSingleReadReused">
+            </test>
+         </with>
+      </definition>
+      <definition
+            id="isDerivativeEditorLinkedToTaxonSelection">
+         <with
+               variable="activeEditor">
+            <test
+                  property="eu.etaxonomy.taxeditor.editor.view.derivate.DerivativeEditorPropertyTester.isLinkedWithTaxonSelection">
+            </test>
+         </with>
+      </definition>
    </extension>
    <extension
          point="org.eclipse.core.expressions.propertyTesters">
@@ -1728,9 +1865,16 @@
             class="eu.etaxonomy.taxeditor.editor.handler.SpecimenPropertyTester"
             id="eu.etaxonomy.taxeditor.editor.handler.SpecimenPropertyTester"
             namespace="eu.etaxonomy.taxeditor.editor.handler.SpecimenPropertyTester"
-            properties="isSequence,isSingleRead"
+            properties="isSequence,isSingleRead,isSingleReadReusableHere,isSingleReadReused"
             type="org.eclipse.jface.viewers.IStructuredSelection">
       </propertyTester>
+      <propertyTester
+            class="eu.etaxonomy.taxeditor.editor.view.derivate.DerivativeEditorPropertyTester"
+            id="eu.etaxonomy.taxeditor.editor.view.derivate.DerivativeEditorPropertyTester"
+            namespace="eu.etaxonomy.taxeditor.editor.view.derivate.DerivativeEditorPropertyTester"
+            properties="isLinkedWithTaxonSelection"
+            type="eu.etaxonomy.taxeditor.editor.view.derivate.DerivateView">
+      </propertyTester>
    </extension>
    <extension
          point="org.eclipse.ui.bindings">   
@@ -1740,7 +1884,7 @@
             name="%scheme.name">
       </scheme>
    </extension>
-    <extension
+    <!--extension
          point="org.eclipse.ui.importWizards">
       <wizard
             category="eu.etaxonomy.taxeditor.import.category.cdm"
@@ -1751,11 +1895,18 @@
             %wizard.description
          </description>
       </wizard>
-   </extension>
+   </extension-->
    <extension
           point="eu.etaxonomy.taxeditor.store.cdmViewer">
-       <cdmViewer
-             class="eu.etaxonomy.taxeditor.editor.EditorCdmViewer">
-       </cdmViewer>
+      <viewCommandMapping
+            commandId="eu.etaxonomy.taxeditor.editor.openTaxonEditorForTaxonNode"
+            selection="eu.etaxonomy.cdm.model.taxon.TaxonNode"
+            viewerName="Taxon Editor">
+      </viewCommandMapping>
+      <viewCommandMapping
+            commandId="eu.etaxonomy.taxeditor.editor.openTaxonEditorForTaxon"
+            selection="eu.etaxonomy.cdm.model.taxon.TaxonBase"
+            viewerName="TaxonEditor">
+      </viewCommandMapping>
     </extension>
 </plugin>