<?xml version="1.0" encoding="UTF-8"?>
<?eclipse version="3.4"?>
<plugin>
- <extension
- point="org.eclipse.ui.editors">
- <editor
- class="eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor"
- default="false"
- id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor"
- name="Alignment Editor">
- </editor>
- </extension>
- <extension
- point="org.eclipse.ui.views">
- <view
- allowMultiple="true"
- class="eu.etaxonomy.taxeditor.molecular.editor.PherogramViewPart"
- id="eu.etaxonomy.taxeditor.molecular.PherogramView"
- name="PherogramView"
- restorable="true">
- </view>
- </extension>
- <extension
- point="org.eclipse.ui.commands">
- <command
- defaultHandler="eu.etaxonomy.taxeditor.molecular.handler.EditSequenceHandler"
- id="eu.etaxonomy.taxeditor.molecular.editSequence"
- name="Edit Sequence">
- </command>
- <command
- defaultHandler="eu.etaxonomy.taxeditor.molecular.handler.ShowPherogramHandler"
- id="eu.etaxonomy.taxeditor.molecular.showPherogram"
- name="Show Pherogram">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft"
- name="Cut pherogram left">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight"
- name="Cut pherogram right">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows"
- name="Reverse complement selected rows">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus"
- name="(Re)create consensus sequence">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus"
- name="Update consensus sequence">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities"
- name="Toggle show probability values">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines"
- name="Toggle show base call lines">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput"
- name="Change quality output">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram"
- name="Load Pherogram">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite"
- name="Toggle insert/overwrite">
- </command>
- <command
- id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleLeftRightInsertion"
- name="Toggle left/right insertion in base call sequence">
- </command>
- </extension>
<extension
point="org.eclipse.ui.menus">
<menuContribution
id="eu.etaxonomy.taxeditor.molecular.alignmentToolbar">
<command
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite"
- label="Toggle insert/overwrite"
+ label="%command.TOGGLE_INSERT_OVERWRITE"
style="push">
<visibleWhen
checkEnabled="true">
</command>
</toolbar>
</menuContribution>
- <menuContribution
- allPopups="false"
- locationURI="menu:org.eclipse.ui.main.menu">
- <menu
- label="Alignment Editor">
- <command
- commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram"
- style="push">
- </command>
- <command
- commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft"
- id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft"
- name="Cut pherogram left">
- </command>
- <command
- commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight"
- id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight"
- style="push">
- </command>
- <command
- commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows"
- mnemonic="r"
- style="push">
- </command>
- <command
- commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus"
- style="push">
- </command>
- <command
- commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus"
- style="push">
- </command>
- <visibleWhen
- checkEnabled="true">
- <with
- variable="activePartId">
- <equals
- value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
- </equals>
- </with>
- </visibleWhen>
- </menu>
- <menu
- label="Pherogram View">
- <command
- commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput"
- style="push">
- </command>
- <command
- commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities"
- style="push">
- </command>
- <command
- commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines"
- style="push">
- </command>
- <visibleWhen
- checkEnabled="true">
- <with
- variable="activePartId">
- <equals
- value="eu.etaxonomy.taxeditor.molecular.PherogramView">
- </equals>
- </with>
- </visibleWhen>
- </menu>
- </menuContribution>
- <menuContribution
- locationURI="popup:eu.etaxonomy.taxeditor.editor.view.derivate.DerivateView?before=eu.etaxonomy.taxeditor.editor.derivative.reuseSingleReadMenuItem">
- <separator
- name="eu.etaxonomy.taxeditor.molecular.separator5"
- visible="true">
- </separator>
- <command
- commandId="eu.etaxonomy.taxeditor.molecular.editSequence"
- label="Edit Sequence"
- style="push">
- <visibleWhen
- checkEnabled="true">
- <reference
- definitionId="isSequence">
- </reference>
- </visibleWhen>
- </command>
- <command
- commandId="eu.etaxonomy.taxeditor.molecular.showPherogram"
- label="Show Pherogram"
- style="push">
- <visibleWhen
- checkEnabled="true">
- <reference
- definitionId="isSingleRead">
- </reference>
- </visibleWhen>
- </command>
- </menuContribution>
</extension>
<extension
- point="org.eclipse.ui.handlers">
- <handler
- class="eu.etaxonomy.taxeditor.molecular.handler.LoadPherogramHandler"
- commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram">
- <activeWhen>
- <with
- variable="activePartId">
- <equals
- value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
- </equals>
- </with>
- </activeWhen>
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.molecular.handler.ToggleInsertOverwriteHandler"
- commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite">
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.molecular.handler.ToggleLeftRightInsertionHandler"
- commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleLeftRightInsertion">
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.molecular.handler.CutPherogramLeftHandler"
- commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft">
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.molecular.handler.CutPherogramRightHandler"
- commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight">
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.molecular.handler.ReverseComplementHandler"
- commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows">
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.molecular.handler.CreateConsensusSequenceHandler"
- commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus">
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.molecular.handler.UpdateConsensusSequenceHandler"
- commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus">
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.molecular.handler.ToggleShowPherogramProbabilitiesHandler"
- commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities">
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.molecular.handler.ToggleShowPherogramBaseCallLinesHandler"
- commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines">
- </handler>
- <handler
- class="eu.etaxonomy.taxeditor.molecular.handler.ChangePherogramQualityOutputType"
- commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput">
- </handler>
+ id="id1"
+ point="org.eclipse.e4.workbench.model">
+ <fragment
+ apply="always"
+ uri="fragment.e4xmi">
+ </fragment>
</extension>
<extension
- point="org.eclipse.ui.bindings">
- <scheme
- description="%scheme.description"
- id="eu.etaxonomy.taxeditor.bindings.scheme.default"
- name="%scheme.name">
- </scheme>
- <key
- commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram"
- schemeId="eu.etaxonomy.taxeditor.bindings.scheme.default"
- sequence="M1+O">
- </key>
+ point="org.eclipse.core.expressions.definitions">
+ <definition
+ id="isAlignmentEditor">
+ <with
+ variable="activePartId">
+ <equals
+ value="eu.etaxonomy.taxeditor.molecular.editor.e4.AlignmentEditorE4">
+ </equals>
+ </with>
+ </definition>
+ <definition
+ id="isPherogramView">
+ <with
+ variable="activePartId">
+ <equals
+ value="eu.etaxonomy.taxeditor.molecular.editor.e4.PherogramPartE4">
+ </equals>
+ </with>
+ </definition>
</extension>
</plugin>
BGBM BDI Projects / taxeditor.git / blobdiff