ref #6913 Remove alignment editor

[taxeditor.git] / eu.etaxonomy.taxeditor.molecular / src / main / java / eu / etaxonomy / taxeditor / molecular / io / CDMSequenceMatrixAdapter.java

diff --git a/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/CDMSequenceMatrixAdapter.java b/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/CDMSequenceMatrixAdapter.java
index 8f40acaad4b69167a455edd16c3ca65e0ea11b06..ed3da122d882cd842e4397666408ee2d3660951e 100644 (file)
--- a/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/CDMSequenceMatrixAdapter.java
+++ b/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/CDMSequenceMatrixAdapter.java
@@ -21,7 +21,7 @@ import javax.xml.namespace.QName;
 \r
 import eu.etaxonomy.cdm.model.molecular.Sequence;\r
 import eu.etaxonomy.cdm.model.molecular.SingleReadAlignment;\r
-import eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor;\r
+import eu.etaxonomy.taxeditor.molecular.editor.e4.AlignmentEditorE4;\r
 import eu.etaxonomy.taxeditor.molecular.l10n.Messages;\r
 import info.bioinfweb.commons.bio.CharacterStateSetType;\r
 import info.bioinfweb.commons.io.W3CXSConstants;\r
@@ -238,7 +238,7 @@ public class CDMSequenceMatrixAdapter extends NoCharDefsNoSetsMatrixDataAdapter
                 writeMetadataEvents(receiver, sequenceID, PREDICATE_HAS_LEFT_CUT_POSITION, W3CXSConstants.DATA_TYPE_INT, singleRead.getLeftCutPosition());\r
                 writeMetadataEvents(receiver, sequenceID, PREDICATE_HAS_RIGHT_CUT_POSITION, W3CXSConstants.DATA_TYPE_INT, singleRead.getRightCutPosition());\r
 \r
-                URI pherogramURI = AlignmentEditor.getPherogramURI(singleRead.getSingleRead());\r
+                URI pherogramURI = AlignmentEditorE4.getPherogramURI(singleRead.getSingleRead());\r
                 if (pherogramURI != null) {\r
                     JPhyloIOWritingUtils.writeTerminalResourceMetadata(receiver, createMetadataID(sequenceID, PREDICATE_HAS_PHEROGRAM),\r
                             null, PREDICATE_HAS_PHEROGRAM, pherogramURI);\r