LibrAlign dependency version updated.

[taxeditor.git] / eu.etaxonomy.taxeditor.molecular.lib / pom.xml

diff --git a/eu.etaxonomy.taxeditor.molecular.lib/pom.xml b/eu.etaxonomy.taxeditor.molecular.lib/pom.xml
index c16a3cd4413cd1d53c4e851866c44cb5a08ebf0f..4eea27c76983d9b422c562a01083531e910bd895 100644 (file)
--- a/eu.etaxonomy.taxeditor.molecular.lib/pom.xml
+++ b/eu.etaxonomy.taxeditor.molecular.lib/pom.xml
@@ -7,7 +7,7 @@
   <parent>
     <groupId>eu.etaxonomy</groupId>
     <artifactId>taxeditor-parent</artifactId>
-    <version>4.1.0</version>
+    <version>4.5.0-SNAPSHOT</version>
   </parent>
 
   <build>
@@ -24,10 +24,12 @@
               <goal>copy-dependencies</goal>
             </goals>
             <configuration>
-              <includeArtifactIds>libralign-swt, libralign-core,
-                bioinfweb-commons-swt, bioinfweb-commons-core,
-                bioinfweb-commons-bio, bioinfweb-commons-swing,
-                tic-core, libralign-biojava1, core, sequencing, tic-swt</includeArtifactIds>
+              <includeArtifactIds>libralign-core, libralign-swt, libralign-biojava1, libralign-io, 
+                bioinfweb-commons-java-swt, bioinfweb-commons-java-core,
+                bioinfweb-commons-java-bio, bioinfweb-commons-java-swing,
+                tic-core, core, sequencing, 
+                tic-swt, jphyloio-core, owlapi-xmlutils, 
+                commons-lang3, commons-collections4, commons-beanutils</includeArtifactIds>
               <outputDirectory>lib</outputDirectory>
               <overWriteReleases>true</overWriteReleases>
               <overWriteSnapshots>true</overWriteSnapshots>
@@ -72,6 +74,8 @@
               </target>
             </configuration>
           </execution>
+          
+          <!-- The following should not be necessary anymore. -->
           <execution>
             <id>update-snapshot-jar-names</id>
             <phase>validate</phase>
@@ -96,11 +100,7 @@
                 </move>
                 <move todir="./lib">
                   <fileset dir="./lib" />
-                  <mapper type="regexp" from="(^core\-[0-9]\.[0-9]\.[0-9])(\.jar)" to="\1-SNAPSHOT\2" />
-                </move>
-                <move todir="./lib">
-                  <fileset dir="./lib" />
-                  <mapper type="regexp" from="(^sequencing\-[0-9]\.[0-9]\.[0-9])(\.jar)" to="\1-SNAPSHOT\2" />
+                  <mapper type="regexp" from="(^jphyloio\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
                 </move>
               </target>
             </configuration>
@@ -111,55 +111,58 @@
   </build>
 
   <dependencies>
-    <!-- LibrAling -->
+    <!-- Apache commons -->
     <dependency>
-      <groupId>info.bioinfweb.libralign</groupId>
-      <artifactId>libralign-core</artifactId>
-      <version>0.4.0-preview-1</version>
+        <groupId>org.apache.commons</groupId>
+        <artifactId>commons-lang3</artifactId>
+        <version>3.5</version>
     </dependency>
     <dependency>
-      <groupId>info.bioinfweb.libralign</groupId>
-      <artifactId>libralign-swt</artifactId>
-      <version>0.4.0-preview-1</version>
+      <groupId>org.apache.commons</groupId>
+      <artifactId>commons-collections4</artifactId>
+      <version>4.1</version>
     </dependency>
     <dependency>
-      <groupId>info.bioinfweb.libralign</groupId>
-      <artifactId>libralign-biojava1</artifactId>
-      <version>0.4.0-preview-1</version>
+      <groupId>commons-beanutils</groupId>
+      <artifactId>commons-beanutils</artifactId>
+      <version>1.9.2</version>
     </dependency>
-    <!-- commons -->
+    
+    <!-- bioinfweb.commons -->
     <dependency>
       <groupId>info.bioinfweb.commons.java</groupId>
-      <artifactId>bioinfweb-commons-swt</artifactId>
-      <version>2.0.0-preview-1</version>
+      <artifactId>bioinfweb-commons-java-core</artifactId>
+      <version>2.2.0</version>
     </dependency>
     <dependency>
       <groupId>info.bioinfweb.commons.java</groupId>
-      <artifactId>bioinfweb-commons-core</artifactId>
-      <version>2.0.0-preview-1</version>
+      <artifactId>bioinfweb-commons-java-swt</artifactId>
+      <version>2.0.0</version>
     </dependency>
     <dependency>
       <groupId>info.bioinfweb.commons.java</groupId>
-      <artifactId>bioinfweb-commons-bio</artifactId>
-      <version>2.0.0-preview-1</version>
+      <artifactId>bioinfweb-commons-java-bio</artifactId>
+      <version>2.0.0</version>
     </dependency>
     <dependency>
       <groupId>info.bioinfweb.commons.java</groupId>
-      <artifactId>bioinfweb-commons-swing</artifactId>
-      <version>2.0.0-preview-1</version>
+      <artifactId>bioinfweb-commons-java-swing</artifactId>
+      <version>2.2.0</version>
     </dependency>
-    <!-- tic -->
+    
+    <!-- TIC -->
     <dependency>
       <groupId>info.bioinfweb.tic</groupId>
       <artifactId>tic-core</artifactId>
-      <version>2.0.0-preview-1</version>
+      <version>2.0.0</version>
     </dependency>
     <dependency>
       <groupId>info.bioinfweb.tic</groupId>
       <artifactId>tic-swt</artifactId>
-      <version>2.0.0-preview-1</version>
+      <version>2.0.0</version>
     </dependency>
-    <!-- biojava -->
+    
+    <!-- BioJava -->
     <dependency>
       <groupId>org.biojava</groupId>
       <artifactId>core</artifactId>
@@ -170,6 +173,40 @@
       <artifactId>sequencing</artifactId>
       <version>1.9.2</version>
     </dependency>
+    
+    <!-- LibrAlign -->
+    <dependency>
+      <groupId>info.bioinfweb.libralign</groupId>
+      <artifactId>libralign-core</artifactId>
+      <version>0.4.0</version>
+    </dependency>
+    <dependency>
+      <groupId>info.bioinfweb.libralign</groupId>
+      <artifactId>libralign-swt</artifactId>
+      <version>0.4.0</version>
+    </dependency>
+    <dependency>
+      <groupId>info.bioinfweb.libralign</groupId>
+      <artifactId>libralign-biojava1</artifactId>
+      <version>0.4.0</version>
+    </dependency>
+    <dependency>
+      <groupId>info.bioinfweb.libralign</groupId>
+      <artifactId>libralign-io</artifactId>
+      <version>0.4.0</version>
+    </dependency>
+    
+    <!-- JPhyloIO -->
+    <dependency>
+      <groupId>info.bioinfweb.jphyloio</groupId>
+      <artifactId>jphyloio-core</artifactId>
+      <version>0.3.0</version>
+    </dependency>
+    <dependency>
+      <groupId>info.bioinfweb.thirdparty.owlapi</groupId>
+      <artifactId>owlapi-xmlutils</artifactId>
+      <version>4.1.4</version>
+    </dependency>
   </dependencies>
 
   <repositories>
@@ -178,7 +215,11 @@
       <name>bioinfweb repository</name>
       <url>http://bioinfweb.info/MavenRepository/</url>
     </repository>
+    <!-- <repository>
+      <id>central-maven-repo</id>
+      <name>Maven Central</name>
+      <url>http://central.maven.org/maven2/</url>
+    </repository> -->
   </repositories>
-  
 </project>