Adjustments to recent changes in LibrAlign.

[taxeditor.git] / eu.etaxonomy.taxeditor.editor / src / main / java / eu / etaxonomy / taxeditor / editor / molecular / ContigSequenceDataProvider.java

diff --git a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/ContigSequenceDataProvider.java b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/ContigSequenceDataProvider.java
index 6b93861b8dd54ed2d246070985509977c3df0ee6..2139f628ffa8605b853df68e7e4233188bbe85d2 100644 (file)
--- a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/ContigSequenceDataProvider.java
+++ b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/ContigSequenceDataProvider.java
@@ -13,6 +13,7 @@ package eu.etaxonomy.taxeditor.editor.molecular;
 import org.biojava3.core.sequence.compound.NucleotideCompound;\r
 \r
 import info.bioinfweb.commons.bio.biojava3.core.sequence.compound.AlignmentAmbiguityDNACompoundSet;\r
+import info.bioinfweb.jphyloio.events.TokenSetType;\r
 import info.bioinfweb.libralign.model.AlignmentModel;\r
 import info.bioinfweb.libralign.model.implementations.PackedAlignmentModel;\r
 import info.bioinfweb.libralign.model.tokenset.BioJavaTokenSet;\r
@@ -30,7 +31,8 @@ public class ContigSequenceDataProvider extends PackedAlignmentModel<NucleotideC
 \r
        \r
        public ContigSequenceDataProvider() {\r
-               super(new BioJavaTokenSet<NucleotideCompound>(AlignmentAmbiguityDNACompoundSet.getAlignmentAmbiguityDNACompoundSet(), true));\r
+               super(new BioJavaTokenSet<NucleotideCompound>(TokenSetType.NUCLEOTIDE, \r
+                               AlignmentAmbiguityDNACompoundSet.getAlignmentAmbiguityDNACompoundSet(), true));\r
        }\r
        \r
        \r