ref #9114 adapt some classes with URI to wrapper in taxeditor (cont.)

[taxeditor.git] / eu.etaxonomy.taxeditor.molecular / src / main / java / eu / etaxonomy / taxeditor / molecular / io / CDMSequenceMatrixAdapter.java

diff --git a/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/CDMSequenceMatrixAdapter.java b/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/CDMSequenceMatrixAdapter.java
index 082915544a331a6cc7e4ff4b29c56fdb1a8f3b67..6444d30c01f10bea195251fdc293dfea9d4dfc3c 100644 (file)
--- a/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/CDMSequenceMatrixAdapter.java
+++ b/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/CDMSequenceMatrixAdapter.java
@@ -1,7 +1,6 @@
 package eu.etaxonomy.taxeditor.molecular.io;\r
 \r
 import java.io.IOException;\r
-import java.net.URI;\r
 import java.util.ArrayList;\r
 import java.util.Collections;\r
 import java.util.Iterator;\r
@@ -9,6 +8,7 @@ import java.util.List;
 \r
 import javax.xml.namespace.QName;\r
 \r
+import eu.etaxonomy.cdm.common.URI;\r
 import eu.etaxonomy.cdm.model.molecular.Sequence;\r
 import eu.etaxonomy.cdm.model.molecular.SingleReadAlignment;\r
 import eu.etaxonomy.taxeditor.molecular.editor.e4.AlignmentEditorE4;\r
@@ -229,7 +229,7 @@ public class CDMSequenceMatrixAdapter extends NoCharDefsNoSetsMatrixDataAdapter
                 URI pherogramURI = AlignmentEditorE4.getPherogramURI(singleRead.getSingleRead());\r
                 if (pherogramURI != null) {\r
                     JPhyloIOWritingUtils.writeTerminalResourceMetadata(receiver, createMetadataID(sequenceID, PREDICATE_HAS_PHEROGRAM),\r
-                            null, PREDICATE_HAS_PHEROGRAM, pherogramURI);\r
+                            null, PREDICATE_HAS_PHEROGRAM, pherogramURI.getJavaUri());\r
                 }\r
 \r
                 writeMetadataEvents(receiver, sequenceID, PREDICATE_HAS_PHEROGRAM_ALIGNMENT, DATA_TYPE_PHERORAGM_ALIGNMENT, singleRead.getShifts());\r