Initial import of plugin files

[taxeditor.git] / .gitattributes

diff --git a/.gitattributes b/.gitattributes
index 8c999ebd74b8d2e2f60688f06021eea5b4b5061e..ed822cf914b7f4960e71ee85645da2173d6805f6 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -376,8 +376,6 @@ eu.etaxonomy.taxeditor.editor/icons/pherogram-insert-left-disabled-16x16.png -te
 eu.etaxonomy.taxeditor.editor/icons/pherogram-insert-right-16x16.png -text
 eu.etaxonomy.taxeditor.editor/icons/pherogram-insert-right-disabled-16x16.png -text
 eu.etaxonomy.taxeditor.editor/icons/xper64.png -text
-eu.etaxonomy.taxeditor.editor/lib/biojava3-alignment-3.0.7.jar -text
-eu.etaxonomy.taxeditor.editor/lib/biojava3-core-3.0.7.jar -text
 eu.etaxonomy.taxeditor.editor/lib/commons-lang3-3.1.jar -text
 eu.etaxonomy.taxeditor.editor/lib/core-1.8.5.jar -text
 eu.etaxonomy.taxeditor.editor/lib/sequencing-1.8.5.jar -text
@@ -461,8 +459,6 @@ eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/key/po
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/key/polytomous/operation/RefreshNodeNumberingOperation.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/AlignmentEditor.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/AlignmentEditorInput.java -text
-eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/CDMAlignmentObjectPlaceholder.java -text
-eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/ContigSequenceDataProvider.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/PherogramMouseListener.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/PherogramViewPart.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/name/TaxonNameEditor.java -text
@@ -973,6 +969,44 @@ eu.etaxonomy.taxeditor.help/src/eu/etaxonomy/taxeditor/help/Activator.java -text
 eu.etaxonomy.taxeditor.help/toc.xml -text
 eu.etaxonomy.taxeditor.help/tocgettingstarted.xml -text
 eu.etaxonomy.taxeditor.help/tocnameparser.xml -text
+eu.etaxonomy.taxeditor.molecular/.classpath -text
+eu.etaxonomy.taxeditor.molecular/.project -text
+eu.etaxonomy.taxeditor.molecular/META-INF/MANIFEST.MF -text
+eu.etaxonomy.taxeditor.molecular/OSGI-INF/l10n/plugin.properties -text
+eu.etaxonomy.taxeditor.molecular/OSGI-INF/l10n/plugin_de.properties -text
+eu.etaxonomy.taxeditor.molecular/OSGI-INF/l10n/plugin_en.properties -text
+eu.etaxonomy.taxeditor.molecular/build.properties -text
+eu.etaxonomy.taxeditor.molecular/icons/insert-16x16.png -text
+eu.etaxonomy.taxeditor.molecular/icons/overwrite-16x16.png -text
+eu.etaxonomy.taxeditor.molecular/icons/pherogram-insert-left-16x16.png -text
+eu.etaxonomy.taxeditor.molecular/icons/pherogram-insert-left-disabled-16x16.png -text
+eu.etaxonomy.taxeditor.molecular/icons/pherogram-insert-right-16x16.png -text
+eu.etaxonomy.taxeditor.molecular/icons/pherogram-insert-right-disabled-16x16.png -text
+eu.etaxonomy.taxeditor.molecular/plugin.xml -text
+eu.etaxonomy.taxeditor.molecular/pom.xml -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/TaxeditorMolecularPlugin.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/editor/AlignmentEditor.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/editor/AlignmentEditorInput.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/editor/PherogramMouseListener.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/editor/PherogramViewPart.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/AbstractAlignmentEditorHandler.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/AbstractPherogramComponentHandler.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/ChangePherogramQualityOutputType.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/CreateConsensusSequenceHandler.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/CutPherogramLeftHandler.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/CutPherogramRightHandler.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/EditSequenceHandler.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/HandlerTools.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/LoadPherogramHandler.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/ReverseComplementHandler.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/ShowPherogramHandler.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/SpecimenPropertyTester.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/ToggleInsertOverwriteHandler.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/ToggleLeftRightInsertionHandler.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/ToggleShowPherogramBaseCallLinesHandler.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/ToggleShowPherogramProbabilitiesHandler.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/UpdateConsensusSequenceHandler.java -text
+eu.etaxonomy.taxeditor.molecular/src/eu/etaxonomy/taxeditor/molecular/handler/package-info.java -text
 eu.etaxonomy.taxeditor.navigation/.classpath -text
 eu.etaxonomy.taxeditor.navigation/.project -text
 eu.etaxonomy.taxeditor.navigation/META-INF/MANIFEST.MF -text