eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/io/e4/in/ris/RISImportWizardE4.java

   1 /**
   2 * Copyright (C) 2017 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9 package eu.etaxonomy.taxeditor.io.e4.in.ris;
  10
  11 import java.io.File;
  12 import java.io.FileInputStream;
  13 import java.io.FileNotFoundException;
  14 import java.io.IOException;
  15 import java.net.URI;
  16 import java.util.ArrayList;
  17 import java.util.List;
  18
  19 import javax.inject.Inject;
  20
  21 import org.apache.commons.io.IOUtils;
  22 import org.apache.log4j.Logger;
  23 import org.eclipse.core.runtime.jobs.Job;
  24 import org.eclipse.e4.core.contexts.ContextInjectionFactory;
  25 import org.eclipse.e4.core.contexts.IEclipseContext;
  26 import org.eclipse.e4.ui.workbench.modeling.EPartService;
  27
  28 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  29 import eu.etaxonomy.cdm.io.common.IImportConfigurator.SOURCE_TYPE;
  30 import eu.etaxonomy.cdm.io.reference.ris.in.RisReferenceImportConfigurator;
  31 import eu.etaxonomy.taxeditor.io.e4.in.AbstractImportWizardE4;
  32 import eu.etaxonomy.taxeditor.io.e4.in.GenericConfiguratorWizardPageE4;
  33 import eu.etaxonomy.taxeditor.io.e4.in.ImportFromFileDataSourceWizardPageE4;
  34 import eu.etaxonomy.taxeditor.io.wizard.ExcelDistributionUpdateWizard;
  35 import eu.etaxonomy.taxeditor.store.CdmStore;
  36
  37 /**
  38  * @author k.luther
  39  * @date 12.05.2017
  40  *
  41  */
  42 public class RISImportWizardE4 extends AbstractImportWizardE4<RisReferenceImportConfigurator>{
  43
  44     private RisReferenceImportConfigurator configurator;
  45
  46     private ImportFromFileDataSourceWizardPageE4 dataSourcePage;
  47
  48     private static final Logger logger = Logger.getLogger(ExcelDistributionUpdateWizard.class);
  49
  50     @Inject
  51     public RISImportWizardE4(IEclipseContext context, EPartService partService) {
  52         super(context, partService);
  53     }
  54
  55     /** {@inheritDoc} */
  56     @Override
  57     public RisReferenceImportConfigurator getConfigurator() {
  58         return configurator;
  59     }
  60
  61     /** {@inheritDoc} */
  62     @Override
  63     public boolean performFinish() {
  64         URI source = dataSourcePage.getUri();
  65         configurator.setDbSchemaValidation(DbSchemaValidation.CREATE);
  66         File file = new File(source);
  67        FileInputStream fis;
  68
  69         try {
  70             fis = new FileInputStream(file);
  71             byte[] data;
  72             data = IOUtils.toByteArray(fis);
  73             configurator.setStream(data);
  74 //TODO: workaround, needs to be changed to source as byte array
  75             Job job = CdmStore.getImportManager().createIOServiceJob(configurator, data, SOURCE_TYPE.INPUTSTREAM);
  76             CdmStore.getImportManager().run(job);
  77         } catch (FileNotFoundException e) {
  78             logger.error("Error while reading file" + source.toString());
  79         } catch (IOException e){
  80
  81         }
  82
  83         return true;
  84     }
  85
  86     /** {@inheritDoc} */
  87     @Override
  88     public void init() {
  89         configurator = RisReferenceImportConfigurator.NewInstance();
  90
  91     }
  92
  93     /** {@inheritDoc} */
  94     @Override
  95     public void addPages() {
  96         addDataSourcePage();
  97     }
  98     @Override
  99     protected void addConfiguratorPage(){
 100         List<String> ignoreMethods = new ArrayList<>();
 101         ignoreMethods.add("setIgnoreNull");
 102         ignoreMethods.add("setInteractWithUser");
 103         ignoreMethods.add("setUseClassification");
 104         pageConfiguration = ContextInjectionFactory.make(GenericConfiguratorWizardPageE4.class, context);
 105         pageConfiguration.initImport(getConfigurator(), ignoreMethods, "Ris Import");
 106         addPage(pageConfiguration);
 107     }
 108
 109     private void addDataSourcePage(){
 110         dataSourcePage = ContextInjectionFactory.make(ImportFromFileDataSourceWizardPageE4.class, context);
 111         dataSourcePage.setTitle("Choose Ris File");
 112         dataSourcePage.setDescription("Please choose a file in RIS format.");
 113         dataSourcePage.setExtensions(new String[]{"*.txt"});
 114         addPage(dataSourcePage);
 115     }
 116
 117 }