3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.view
.derivateSearch
;
12 import java
.util
.List
;
14 import java
.util
.UUID
;
16 import org
.eclipse
.jface
.viewers
.ColumnLabelProvider
;
17 import org
.eclipse
.jface
.viewers
.TreeNode
;
18 import org
.eclipse
.swt
.graphics
.Image
;
19 import org
.hibernate
.LazyInitializationException
;
21 import eu
.etaxonomy
.cdm
.api
.conversation
.ConversationHolder
;
22 import eu
.etaxonomy
.cdm
.model
.common
.DefinedTerm
;
23 import eu
.etaxonomy
.cdm
.model
.molecular
.DnaSample
;
24 import eu
.etaxonomy
.cdm
.model
.molecular
.Sequence
;
25 import eu
.etaxonomy
.cdm
.model
.molecular
.SingleRead
;
26 import eu
.etaxonomy
.cdm
.model
.occurrence
.Collection
;
27 import eu
.etaxonomy
.cdm
.model
.occurrence
.DerivedUnit
;
28 import eu
.etaxonomy
.cdm
.model
.occurrence
.FieldUnit
;
29 import eu
.etaxonomy
.cdm
.model
.occurrence
.GatheringEvent
;
30 import eu
.etaxonomy
.cdm
.model
.occurrence
.MediaSpecimen
;
31 import eu
.etaxonomy
.cdm
.model
.occurrence
.SpecimenOrObservationBase
;
32 import eu
.etaxonomy
.cdm
.model
.occurrence
.SpecimenOrObservationType
;
33 import eu
.etaxonomy
.taxeditor
.model
.ImageResources
;
34 import eu
.etaxonomy
.taxeditor
.store
.CdmStore
;
37 * Label provider for the views to show {@link SpecimenOrObservationBase}s.<br>
39 * <b>Note:</b> If you use this label provider you need to assure that you
40 * created a {@link ConversationHolder} resp. have an open session because
41 * the labels are generated from various fields of the derivate hierarchy which
42 * are lazy loaded and could therefore throw a {@link LazyInitializationException}.
44 public class DerivateLabelProvider
extends ColumnLabelProvider
{
46 private Set
<SingleRead
> multiLinkSingleReads
;
48 private static DefinedTerm photoTerm
= null;
49 private static DefinedTerm drawingTerm
= null;
50 private static DefinedTerm specimenScanTerm
= null;
52 private static void initializeTerms() {
53 List
<DefinedTerm
> preferredTerms
= CdmStore
.getTermManager().getPreferredTerms(DefinedTerm
.class);
54 for (DefinedTerm definedTerm
: preferredTerms
) {
55 if(definedTerm
.getUuid().equals(UUID
.fromString("04673952-dab1-42ff-b47a-5e847c350eaf"))){//photo
56 photoTerm
= definedTerm
;
58 else if(definedTerm
.getUuid().equals(UUID
.fromString("76204a15-098f-4afe-9e8f-fa344ee3fdbb"))){//drawing
59 drawingTerm
= definedTerm
;
61 else if(definedTerm
.getUuid().equals(UUID
.fromString("c0b127d6-c849-48f9-bbc3-29e3337c1d03"))){//cover TODO temporary until new term is created
62 specimenScanTerm
= definedTerm
;
67 public static DefinedTerm
getLivingPlantPhotoTerm(){
74 public static DefinedTerm
getArtworkTerm(){
75 if(drawingTerm
==null){
81 public static DefinedTerm
getSpecimenScanTerm(){
82 if(specimenScanTerm
==null){
85 return specimenScanTerm
;
91 public String
getText(Object element
) {
92 return getDerivateText(element
);
97 public String
getToolTipText(Object element
) {
98 return getDerivateText(element
);
106 public static String
getDerivateText(Object element
){
107 TreeNode parentNode
= null;
108 if(element
instanceof TreeNode
){
109 parentNode
= ((TreeNode
) element
).getParent();
110 //unwrap specimen from TreeNode
111 element
= ((TreeNode
) element
).getValue();
115 if(element
instanceof FieldUnit
){
116 FieldUnit fieldUnit
= (FieldUnit
)element
;
117 GatheringEvent gatheringEvent
= fieldUnit
.getGatheringEvent();
118 if(gatheringEvent
!=null){
119 label
+= gatheringEvent
.getCountry()!=null?gatheringEvent
.getCountry().getLabel()+", ":"";
120 label
+= gatheringEvent
.getLocality()!=null?gatheringEvent
.getLocality().getText()+", ":"";
121 label
+= gatheringEvent
.getGatheringDate()!=null?gatheringEvent
.getGatheringDate()+", ":"";
122 label
+= gatheringEvent
.getCollector()!=null?gatheringEvent
.getCollector()+", ":"";
124 label
+= fieldUnit
.getFieldNumber()!=null?fieldUnit
.getFieldNumber():"";
126 else if(element
instanceof DerivedUnit
){
127 DerivedUnit derivedUnit
= (DerivedUnit
)element
;
128 if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.PreservedSpecimen
){
129 if(parentNode
!=null && parentNode
.getValue() instanceof FieldUnit
){
130 FieldUnit fieldUnit
= (FieldUnit
) parentNode
.getValue();
131 GatheringEvent gatheringEvent
= fieldUnit
.getGatheringEvent();
132 if(gatheringEvent
!=null){
133 label
+= gatheringEvent
.getCollector()!=null?gatheringEvent
.getCollector()+", ":"";
135 label
+= fieldUnit
.getFieldNumber()!=null?fieldUnit
.getFieldNumber()+", ":"";
137 Collection collection
= derivedUnit
.getCollection();
138 if(collection
!=null){
139 label
+= collection
.getName()!=null?collection
.getName()+" ":"";
140 label
+= collection
.getCode()!=null?
"("+collection
.getCode()+"), ":"";
142 label
+= derivedUnit
.getAccessionNumber()!=null?derivedUnit
.getAccessionNumber()+", ":"";
143 label
+= derivedUnit
.getBarcode()!=null?derivedUnit
.getBarcode():"";
145 else if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.TissueSample
){
146 // kindofTissue + SampleDesignation
149 else if(element
instanceof MediaSpecimen
){
150 MediaSpecimen mediaSpecimen
= (MediaSpecimen
)element
;
152 label
+= element
.toString();
154 else if(element
instanceof DnaSample
155 || (element
instanceof DerivedUnit
156 && ((SpecimenOrObservationBase
<?
>) element
).getRecordBasis()==SpecimenOrObservationType
.DnaSample
)){
158 label
+= element
.toString();
161 else if(element
instanceof Sequence
){
162 Sequence sequence
= (Sequence
)element
;
163 label
+= "SampleDesignation?"+", ";
164 label
+= sequence
.getDnaMarker()!=null?sequence
.getDnaMarker():"";
166 else if(element
instanceof SingleRead
){
167 SingleRead singleRead
= (SingleRead
)element
;
168 label
+= singleRead
.getPrimer()!=null?singleRead
.getPrimer().getLabel()+", ":"";
171 else if(element
instanceof SpecimenOrObservationBase
){
172 SpecimenOrObservationBase
<?
> derivate
= (SpecimenOrObservationBase
<?
>) element
;
173 SpecimenOrObservationType type
= derivate
.getRecordBasis();
174 return derivate
.getTitleCache() + (type
!=null?
" ["+type
.toString()+"]":"");
177 label
= element
.toString();
179 else if(label
.endsWith(", ")){
180 label
= label
.substring(0, label
.length()-2);
186 * @see org.eclipse.jface.viewers.ColumnLabelProvider#getImage(java.lang.Object)
189 public Image
getImage(Object element
) {
190 if(element
instanceof TreeNode
){
191 element
= ((TreeNode
) element
).getValue();
193 if(element
instanceof FieldUnit
){
194 return ImageResources
.getImage(ImageResources
.FIELD_UNIT
);
196 else if(element
instanceof DerivedUnit
){
197 DerivedUnit derivedUnit
= (DerivedUnit
)element
;
198 if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.FieldUnit
){
199 return ImageResources
.getImage(ImageResources
.FIELD_UNIT
);
201 else if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.DnaSample
){
202 return ImageResources
.getImage(ImageResources
.DNA_SAMPLE_DERIVATE
);
204 else if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.TissueSample
){
205 return ImageResources
.getImage(ImageResources
.TISSUE_SAMPLE_DERIVATE
);
207 else if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.PreservedSpecimen
){
208 return ImageResources
.getImage(ImageResources
.SPECIMEN_DERIVATE
);
210 else if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.StillImage
){
211 if(derivedUnit
.getKindOfUnit()!=null){
212 if(derivedUnit
.getKindOfUnit().equals(getArtworkTerm())){
213 return ImageResources
.getImage(ImageResources
.ARTWORK_DERIVATE
);
215 else if(derivedUnit
.getKindOfUnit().equals(getLivingPlantPhotoTerm())){
216 return ImageResources
.getImage(ImageResources
.LIVING_PLANT_PHOTO_DERIVATE
);
218 else if(derivedUnit
.getKindOfUnit().equals(getSpecimenScanTerm())){
219 return ImageResources
.getImage(ImageResources
.SPECIMEN_SCAN_DERIVATE
);
224 else if(element
instanceof Sequence
){
225 return ImageResources
.getImage(ImageResources
.SEQUENCE_DERIVATE
);
228 else if(element
instanceof SingleRead
){
229 if(multiLinkSingleReads
.contains(element
)){
230 return ImageResources
.getImage(ImageResources
.SINGLE_READ_DERIVATE_MULTILINK
);
233 return ImageResources
.getImage(ImageResources
.SINGLE_READ_DERIVATE
);
236 return super.getImage(element
);
240 * @param multiLinkSingleReads2
242 public void setMultiLinkSingleReads(Set
<SingleRead
> multiLinkSingleReads
) {
243 this.multiLinkSingleReads
= multiLinkSingleReads
;