eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/io/e4/in/ris/RISImportWizardE4.java

   1 /**
   2 * Copyright (C) 2017 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9 package eu.etaxonomy.taxeditor.io.e4.in.ris;
  10
  11 import java.io.File;
  12 import java.io.FileInputStream;
  13 import java.io.FileNotFoundException;
  14 import java.io.IOException;
  15 import java.util.ArrayList;
  16 import java.util.List;
  17
  18 import javax.inject.Inject;
  19
  20 import org.apache.commons.io.IOUtils;
  21 import org.apache.logging.log4j.LogManager;import org.apache.logging.log4j.Logger;
  22 import org.eclipse.core.runtime.jobs.Job;
  23 import org.eclipse.e4.core.contexts.ContextInjectionFactory;
  24 import org.eclipse.e4.core.contexts.IEclipseContext;
  25 import org.eclipse.e4.ui.workbench.modeling.EPartService;
  26
  27 import eu.etaxonomy.cdm.common.URI;
  28 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  29 import eu.etaxonomy.cdm.io.common.IImportConfigurator.SOURCE_TYPE;
  30 import eu.etaxonomy.cdm.io.reference.ris.in.RisReferenceImportConfigurator;
  31 import eu.etaxonomy.taxeditor.io.e4.in.AbstractImportWizardE4;
  32 import eu.etaxonomy.taxeditor.io.e4.in.GenericConfiguratorWizardPageE4;
  33 import eu.etaxonomy.taxeditor.io.e4.in.ImportFromFileDataSourceWithReferenceWizardPage;
  34 import eu.etaxonomy.taxeditor.io.e4.in.excel.distribution.ExcelDistributionUpdateWizardE4;
  35 import eu.etaxonomy.taxeditor.store.CdmStore;
  36
  37 /**
  38  * @author k.luther
  39  * @date 12.05.2017
  40  */
  41 public class RISImportWizardE4 extends AbstractImportWizardE4<RisReferenceImportConfigurator>{
  42
  43     private RisReferenceImportConfigurator configurator;
  44
  45     private ImportFromFileDataSourceWithReferenceWizardPage dataSourcePage;
  46
  47     private static final Logger logger = LogManager.getLogger(ExcelDistributionUpdateWizardE4.class);
  48
  49     @Inject
  50     public RISImportWizardE4(IEclipseContext context, EPartService partService) {
  51         super(context, partService);
  52     }
  53
  54     @Override
  55     public RisReferenceImportConfigurator getConfigurator() {
  56         return configurator;
  57     }
  58
  59     @Override
  60     public boolean performFinish() {
  61         URI source = dataSourcePage.getUri();
  62         configurator.setDbSchemaValidation(DbSchemaValidation.CREATE);
  63         File file = new File(source.getJavaUri());
  64        FileInputStream fis;
  65
  66         try {
  67             fis = new FileInputStream(file);
  68             byte[] data;
  69             data = IOUtils.toByteArray(fis);
  70             configurator.setStream(data);
  71 //TODO: workaround, needs to be changed to source as byte array
  72             Job job = CdmStore.getImportManager().createIOServiceJob(configurator, data, SOURCE_TYPE.INPUTSTREAM);
  73             CdmStore.getImportManager().run(job);
  74         } catch (FileNotFoundException e) {
  75             logger.error("Error while reading file" + source.toString());
  76         } catch (IOException e){
  77
  78         }
  79
  80         return true;
  81     }
  82
  83     @Override
  84     public void init() {
  85         configurator = RisReferenceImportConfigurator.NewInstance();
  86
  87     }
  88
  89     @Override
  90     public void addPages() {
  91         addDataSourcePage();
  92     }
  93     @Override
  94     protected void addConfiguratorPage(){
  95         List<String> ignoreMethods = new ArrayList<>();
  96         ignoreMethods.add("setIgnoreNull");
  97         ignoreMethods.add("setInteractWithUser");
  98         ignoreMethods.add("setUseClassification");
  99         pageConfiguration = ContextInjectionFactory.make(GenericConfiguratorWizardPageE4.class, context);
 100         pageConfiguration.initImport(getConfigurator(), ignoreMethods, "Ris Import");
 101         addPage(pageConfiguration);
 102     }
 103
 104     private void addDataSourcePage(){
 105         dataSourcePage = ContextInjectionFactory.make(ImportFromFileDataSourceWithReferenceWizardPage.class, context);
 106         dataSourcePage.setTitle("Choose Ris File");
 107         dataSourcePage.setDescription("Please choose a file in RIS format.");
 108         dataSourcePage.setExtensions(new String[]{"*.txt"});
 109         addPage(dataSourcePage);
 110     }
 111
 112 }