3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.editor
.view
.dataimport
.transientServices
;
12 import java
.io
.IOException
;
13 import java
.util
.Collection
;
14 import java
.util
.EnumSet
;
15 import java
.util
.List
;
18 import java
.util
.UUID
;
20 import org
.apache
.lucene
.index
.CorruptIndexException
;
21 import org
.apache
.lucene
.queryParser
.ParseException
;
22 import org
.hibernate
.LockMode
;
23 import org
.hibernate
.Session
;
24 import org
.hibernate
.criterion
.Criterion
;
25 import org
.hibernate
.envers
.query
.criteria
.AuditCriterion
;
27 import eu
.etaxonomy
.cdm
.api
.service
.ITaxonService
;
28 import eu
.etaxonomy
.cdm
.api
.service
.TaxaAndNamesSearchMode
;
29 import eu
.etaxonomy
.cdm
.api
.service
.config
.DeleteConfiguratorBase
;
30 import eu
.etaxonomy
.cdm
.api
.service
.config
.IFindTaxaAndNamesConfigurator
;
31 import eu
.etaxonomy
.cdm
.api
.service
.config
.IIdentifiableEntityServiceConfigurator
;
32 import eu
.etaxonomy
.cdm
.api
.service
.config
.MatchingTaxonConfigurator
;
33 import eu
.etaxonomy
.cdm
.api
.service
.config
.SynonymDeletionConfigurator
;
34 import eu
.etaxonomy
.cdm
.api
.service
.config
.TaxonDeletionConfigurator
;
35 import eu
.etaxonomy
.cdm
.api
.service
.exception
.DataChangeNoRollbackException
;
36 import eu
.etaxonomy
.cdm
.api
.service
.exception
.HomotypicalGroupChangeException
;
37 import eu
.etaxonomy
.cdm
.api
.service
.pager
.Pager
;
38 import eu
.etaxonomy
.cdm
.api
.service
.search
.LuceneMultiSearchException
;
39 import eu
.etaxonomy
.cdm
.api
.service
.search
.SearchResult
;
40 import eu
.etaxonomy
.cdm
.api
.service
.util
.TaxonRelationshipEdge
;
41 import eu
.etaxonomy
.cdm
.common
.monitor
.IProgressMonitor
;
42 import eu
.etaxonomy
.cdm
.model
.common
.Annotation
;
43 import eu
.etaxonomy
.cdm
.model
.common
.ISourceable
;
44 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableEntity
;
45 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableSource
;
46 import eu
.etaxonomy
.cdm
.model
.common
.LSID
;
47 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
48 import eu
.etaxonomy
.cdm
.model
.common
.Marker
;
49 import eu
.etaxonomy
.cdm
.model
.common
.MarkerType
;
50 import eu
.etaxonomy
.cdm
.model
.common
.OrderedTermVocabulary
;
51 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
;
52 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
.Direction
;
53 import eu
.etaxonomy
.cdm
.model
.common
.UuidAndTitleCache
;
54 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionElementBase
;
55 import eu
.etaxonomy
.cdm
.model
.description
.Feature
;
56 import eu
.etaxonomy
.cdm
.model
.description
.PresenceAbsenceTermBase
;
57 import eu
.etaxonomy
.cdm
.model
.location
.NamedArea
;
58 import eu
.etaxonomy
.cdm
.model
.media
.Media
;
59 import eu
.etaxonomy
.cdm
.model
.media
.MediaRepresentation
;
60 import eu
.etaxonomy
.cdm
.model
.media
.Rights
;
61 import eu
.etaxonomy
.cdm
.model
.name
.HomotypicalGroup
;
62 import eu
.etaxonomy
.cdm
.model
.name
.Rank
;
63 import eu
.etaxonomy
.cdm
.model
.name
.TaxonNameBase
;
64 import eu
.etaxonomy
.cdm
.model
.reference
.Reference
;
65 import eu
.etaxonomy
.cdm
.model
.taxon
.Classification
;
66 import eu
.etaxonomy
.cdm
.model
.taxon
.Synonym
;
67 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationship
;
68 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationshipType
;
69 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
70 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonBase
;
71 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationship
;
72 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationshipType
;
73 import eu
.etaxonomy
.cdm
.model
.view
.AuditEvent
;
74 import eu
.etaxonomy
.cdm
.model
.view
.AuditEventRecord
;
75 import eu
.etaxonomy
.cdm
.persistence
.dao
.common
.AuditEventSort
;
76 import eu
.etaxonomy
.cdm
.persistence
.fetch
.CdmFetch
;
77 import eu
.etaxonomy
.cdm
.persistence
.query
.Grouping
;
78 import eu
.etaxonomy
.cdm
.persistence
.query
.MatchMode
;
79 import eu
.etaxonomy
.cdm
.persistence
.query
.OrderHint
;
80 import eu
.etaxonomy
.cdm
.strategy
.cache
.common
.IIdentifiableEntityCacheStrategy
;
81 import eu
.etaxonomy
.cdm
.strategy
.match
.IMatchStrategy
;
82 import eu
.etaxonomy
.cdm
.strategy
.merge
.IMergeStrategy
;
89 public class TransientTaxonService
implements ITaxonService
{
91 private final ITaxonService defaultTaxonService
;
94 * @param defaultTaxonService
96 public TransientTaxonService(ITaxonService defaultTaxonService
) {
97 this.defaultTaxonService
= defaultTaxonService
;
105 * @param propertyPaths
107 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
110 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(TaxonBase t
, Integer pageSize
, Integer pageNumber
, AuditEventSort sort
, List
<String
> propertyPaths
) {
111 return defaultTaxonService
.pageAuditEvents(t
, pageSize
, pageNumber
, sort
, propertyPaths
);
115 * @param annotatedObj
120 * @param propertyPaths
122 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
125 public Pager
<Annotation
> getAnnotations(TaxonBase annotatedObj
, MarkerType status
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
126 return defaultTaxonService
.getAnnotations(annotatedObj
, status
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
131 * @see eu.etaxonomy.cdm.api.service.IService#clear()
134 public void clear() {
135 defaultTaxonService
.clear();
141 * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
144 public void lock(TaxonBase t
, LockMode lockMode
) {
145 defaultTaxonService
.lock(t
, lockMode
);
151 * @param propertyPaths
152 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
155 public void refresh(TaxonBase t
, LockMode lockMode
, List
<String
> propertyPaths
) {
156 defaultTaxonService
.refresh(t
, lockMode
, propertyPaths
);
161 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
164 public void updateTitleCache() {
165 defaultTaxonService
.updateTitleCache();
171 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
174 public AuditEventRecord
<TaxonBase
> getNextAuditEvent(TaxonBase t
) {
175 return defaultTaxonService
.getNextAuditEvent(t
);
179 * @param annotatableEntity
184 * @param propertyPaths
186 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
189 public Pager
<Marker
> getMarkers(TaxonBase annotatableEntity
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
190 return defaultTaxonService
.getMarkers(annotatableEntity
, technical
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
196 * @param cacheStrategy
198 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
201 public void updateTitleCache(Class
<?
extends TaxonBase
> clazz
, Integer stepSize
, IIdentifiableEntityCacheStrategy
<TaxonBase
> cacheStrategy
, IProgressMonitor monitor
) {
202 defaultTaxonService
.updateTitleCache(clazz
, stepSize
, cacheStrategy
, monitor
);
208 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
211 public AuditEventRecord
<TaxonBase
> getPreviousAuditEvent(TaxonBase t
) {
212 return defaultTaxonService
.getPreviousAuditEvent(t
);
218 * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
221 public int count(Class
<?
extends TaxonBase
> clazz
) {
222 return defaultTaxonService
.count(clazz
);
233 * @param propertyPaths
235 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
238 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(Class
<?
extends TaxonBase
> clazz
, AuditEvent from
, AuditEvent to
, List
<AuditCriterion
> criteria
, Integer pageSize
, Integer pageValue
, AuditEventSort sort
, List
<String
> propertyPaths
) {
239 return defaultTaxonService
.pageAuditEvents(clazz
, from
, to
, criteria
, pageSize
, pageValue
, sort
, propertyPaths
);
245 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
248 public TaxonBase
find(LSID lsid
) {
249 return defaultTaxonService
.find(lsid
);
253 * @param persistentObject
255 * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
258 public String
delete(TaxonBase persistentObject
) {
259 return defaultTaxonService
.delete(persistentObject
);
267 * @param propertyPaths
269 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
272 public List
<Object
[]> groupMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
273 return defaultTaxonService
.groupMarkers(clazz
, technical
, pageSize
, pageNumber
, propertyPaths
);
279 * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
282 public boolean exists(UUID uuid
) {
283 return defaultTaxonService
.exists(uuid
);
291 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
294 public TaxonBase
replace(TaxonBase x
, TaxonBase y
) {
295 return defaultTaxonService
.replace(x
, y
);
301 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
304 public List
<TaxonBase
> find(Set
<UUID
> uuidSet
) {
305 return defaultTaxonService
.find(uuidSet
);
312 * @param propertyPaths
314 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
317 public Pager
<IdentifiableSource
> getSources(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
318 return defaultTaxonService
.getSources(t
, pageSize
, pageNumber
, propertyPaths
);
324 * @param onlyWithChildren
327 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.reference.Reference, eu.etaxonomy.cdm.persistence.fetch.CdmFetch, boolean)
331 public List
<Taxon
> getRootTaxa(Reference sec
, CdmFetch cdmFetch
, boolean onlyWithChildren
) {
332 return defaultTaxonService
.getRootTaxa(sec
, cdmFetch
, onlyWithChildren
);
338 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
341 public TaxonBase
find(UUID uuid
) {
342 return defaultTaxonService
.find(uuid
);
348 * @param onlyWithChildren
349 * @param withMisapplications
350 * @param propertyPaths
353 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.name.Rank, eu.etaxonomy.cdm.model.reference.Reference, boolean, boolean, java.util.List)
357 public List
<Taxon
> getRootTaxa(Rank rank
, Reference sec
, boolean onlyWithChildren
, boolean withMisapplications
, List
<String
> propertyPaths
) {
358 return defaultTaxonService
.getRootTaxa(rank
, sec
, onlyWithChildren
, withMisapplications
, propertyPaths
);
364 * @see eu.etaxonomy.cdm.api.service.IService#find(int)
367 public TaxonBase
find(int id
) {
368 return defaultTaxonService
.find(id
);
375 * @param propertyPaths
377 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
380 public Pager
<Rights
> getRights(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
381 return defaultTaxonService
.getRights(t
, pageSize
, pageNumber
, propertyPaths
);
388 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
391 public int countMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
) {
392 return defaultTaxonService
.countMarkers(clazz
, technical
);
398 * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
401 public List
<TaxonBase
> findById(Set
<Integer
> idSet
) {
402 return defaultTaxonService
.findById(idSet
);
410 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
413 public ISourceable
getSourcedObjectByIdInSource(Class clazz
, String idInSource
, String idNamespace
) {
414 return defaultTaxonService
.getSourcedObjectByIdInSource(clazz
, idInSource
, idNamespace
);
419 * @see eu.etaxonomy.cdm.api.service.IService#getSession()
422 public Session
getSession() {
423 return defaultTaxonService
.getSession();
428 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
431 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCache() {
432 return defaultTaxonService
.getUuidAndTitleCache();
440 * @param propertyPaths
442 * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
445 public List
<Object
[]> group(Class
<?
extends TaxonBase
> clazz
, Integer limit
, Integer start
, List
<Grouping
> groups
, List
<String
> propertyPaths
) {
446 return defaultTaxonService
.group(clazz
, limit
, start
, groups
, propertyPaths
);
453 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllRelationships(int, int)
456 public List
<RelationshipBase
> getAllRelationships(int limit
, int start
) {
457 return defaultTaxonService
.getAllRelationships(limit
, start
);
468 * @param propertyPaths
470 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
473 public Pager
<TaxonBase
> findByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
474 return defaultTaxonService
.findByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
480 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getTaxonRelationshipTypeVocabulary()
484 public OrderedTermVocabulary
<TaxonRelationshipType
> getTaxonRelationshipTypeVocabulary() {
485 return defaultTaxonService
.getTaxonRelationshipTypeVocabulary();
492 * @see eu.etaxonomy.cdm.api.service.ITaxonService#searchTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)
495 public List
<TaxonBase
> searchTaxaByName(String name
, Reference sec
) {
496 return defaultTaxonService
.searchTaxaByName(name
, sec
);
501 * @param acceptedTaxon
502 * @see eu.etaxonomy.cdm.api.service.ITaxonService#swapSynonymAndAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
505 public void swapSynonymAndAcceptedTaxon(Synonym synonym
, Taxon acceptedTaxon
) {
506 defaultTaxonService
.swapSynonymAndAcceptedTaxon(synonym
, acceptedTaxon
);
514 * @param propertyPaths
516 * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
519 public <S
extends TaxonBase
> List
<S
> list(Class
<S
> type
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
520 return defaultTaxonService
.list(type
, limit
, start
, orderHints
, propertyPaths
);
524 * @param configurator
526 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
529 public Pager
<TaxonBase
> findByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
530 return defaultTaxonService
.findByTitle(configurator
);
535 * @param acceptedTaxon
536 * @param deleteSynonym
537 * @param copyCitationInfo
539 * @param microCitation
541 * @throws HomotypicalGroupChangeException
542 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
545 public Taxon
changeSynonymToAcceptedTaxon(Synonym synonym
, Taxon acceptedTaxon
, boolean deleteSynonym
, boolean copyCitationInfo
, Reference citation
, String microCitation
) throws HomotypicalGroupChangeException
{
546 return defaultTaxonService
.changeSynonymToAcceptedTaxon(synonym
, acceptedTaxon
, deleteSynonym
, copyCitationInfo
, citation
, microCitation
);
555 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
558 public Integer
countByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
) {
559 return defaultTaxonService
.countByTitle(clazz
, queryString
, matchmode
, criteria
);
565 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
568 public TaxonBase
load(UUID uuid
) {
569 return defaultTaxonService
.load(uuid
);
574 * @param propertyPaths
576 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
579 public TaxonBase
load(UUID uuid
, List
<String
> propertyPaths
) {
580 return defaultTaxonService
.load(uuid
, propertyPaths
);
584 * @param configurator
586 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
589 public Integer
countByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
590 return defaultTaxonService
.countByTitle(configurator
);
594 * @param transientObject
596 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
599 public TaxonBase
merge(TaxonBase transientObject
) {
600 return defaultTaxonService
.merge(transientObject
);
611 * @param propertyPaths
613 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
616 public List
<TaxonBase
> listByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
617 return defaultTaxonService
.listByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
625 * @param propertyPaths
627 * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
630 public <S
extends TaxonBase
> Pager
<S
> page(Class
<S
> type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
631 return defaultTaxonService
.page(type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
635 * @param persistentObject
637 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
640 public UUID
refresh(TaxonBase persistentObject
) {
641 return defaultTaxonService
.refresh(persistentObject
);
647 * @param taxonRelationshipType
649 * @param microReference
651 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToRelatedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
654 public Taxon
changeSynonymToRelatedTaxon(Synonym synonym
, Taxon toTaxon
, TaxonRelationshipType taxonRelationshipType
, Reference reference
, String microReference
) {
655 return defaultTaxonService
.changeSynonymToRelatedTaxon(synonym
, toTaxon
, taxonRelationshipType
, reference
, microReference
);
666 * @param propertyPaths
668 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
671 public List
<TaxonBase
> listByReferenceTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
672 return defaultTaxonService
.listByReferenceTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
680 * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
683 public List
<TaxonBase
> rows(String tableName
, int limit
, int start
) {
684 return defaultTaxonService
.rows(tableName
, limit
, start
);
688 * @param newInstances
690 * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
693 public Map
<UUID
, TaxonBase
> save(Collection
<TaxonBase
> newInstances
) {
701 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
704 public long deleteSynonymRelationships(Synonym syn
, Taxon taxon
) {
705 return defaultTaxonService
.deleteSynonymRelationships(syn
, taxon
);
711 * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
714 public UUID
save(TaxonBase newInstance
) {
719 * @param transientObject
721 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
724 public UUID
saveOrUpdate(TaxonBase transientObject
) {
730 * @param newHomotypicalGroup
732 * @param removeFromOtherTaxa
733 * @param setBasionymRelationIfApplicable
734 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeHomotypicalGroupOfSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.name.HomotypicalGroup, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean)
737 public void changeHomotypicalGroupOfSynonym(Synonym synonym
, HomotypicalGroup newHomotypicalGroup
, Taxon targetTaxon
, boolean removeFromOtherTaxa
, boolean setBasionymRelationIfApplicable
) {
738 defaultTaxonService
.changeHomotypicalGroupOfSynonym(synonym
, newHomotypicalGroup
, targetTaxon
, removeFromOtherTaxa
, setBasionymRelationIfApplicable
);
742 * @param transientObjects
744 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
747 public Map
<UUID
, TaxonBase
> saveOrUpdate(Collection
<TaxonBase
> transientObjects
) {
752 * @param transientObject
754 * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
757 public UUID
update(TaxonBase transientObject
) {
758 return defaultTaxonService
.update(transientObject
);
763 * @param includeProperties
767 * @param propertyPaths
769 * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
772 public List
<TaxonBase
> list(TaxonBase example
, Set
<String
> includeProperties
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
773 return defaultTaxonService
.list(example
, includeProperties
, limit
, start
, orderHints
, propertyPaths
);
777 * @param oldSynonymRelation
779 * @param moveHomotypicGroup
780 * @param newSynonymRelationshipType
781 * @param newReference
782 * @param newReferenceDetail
783 * @param keepReference
785 * @throws HomotypicalGroupChangeException
786 * @see eu.etaxonomy.cdm.api.service.ITaxonService#moveSynonymToAnotherTaxon(eu.etaxonomy.cdm.model.taxon.SynonymRelationship, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String, boolean)
789 public SynonymRelationship
moveSynonymToAnotherTaxon(SynonymRelationship oldSynonymRelation
, Taxon newTaxon
, boolean moveHomotypicGroup
, SynonymRelationshipType newSynonymRelationshipType
, Reference newReference
, String newReferenceDetail
, boolean keepReference
) throws HomotypicalGroupChangeException
{
790 return defaultTaxonService
.moveSynonymToAnotherTaxon(oldSynonymRelation
, newTaxon
, moveHomotypicGroup
, newSynonymRelationshipType
, newReference
, newReferenceDetail
, keepReference
);
795 * @param matchStrategy
796 * @param mergeStrategy
798 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
801 public int deduplicate(Class
<?
extends TaxonBase
> clazz
, IMatchStrategy matchStrategy
, IMergeStrategy mergeStrategy
) {
802 return defaultTaxonService
.deduplicate(clazz
, matchStrategy
, mergeStrategy
);
813 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
816 public Pager
<TaxonBase
> findTitleCache(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, MatchMode matchMode
) {
817 return defaultTaxonService
.findTitleCache(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, matchMode
);
826 * @param propertyPaths
828 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
831 public List
<TaxonRelationship
> listToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
832 return defaultTaxonService
.listToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
841 * @param propertyPaths
843 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
846 public Pager
<TaxonRelationship
> pageToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
847 return defaultTaxonService
.pageToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
856 * @param propertyPaths
858 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
861 public List
<TaxonRelationship
> listFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
862 return defaultTaxonService
.listFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
871 * @param propertyPaths
873 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
876 public Pager
<TaxonRelationship
> pageFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
877 return defaultTaxonService
.pageFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
882 * @param includeRelationships
886 * @param propertyPaths
888 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listRelatedTaxa(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List)
891 public Set
<Taxon
> listRelatedTaxa(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Integer maxDepth
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
892 return defaultTaxonService
.listRelatedTaxa(taxon
, includeRelationships
, maxDepth
, limit
, start
, propertyPaths
);
899 * @param propertyPaths
901 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listClassifications(eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
904 public List
<Classification
> listClassifications(TaxonBase taxonBase
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
905 return defaultTaxonService
.listClassifications(taxonBase
, limit
, start
, propertyPaths
);
914 * @param propertyPaths
916 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
919 public Pager
<SynonymRelationship
> getSynonyms(Synonym synonym
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
920 return defaultTaxonService
.getSynonyms(synonym
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
929 * @param propertyPaths
931 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
934 public Pager
<SynonymRelationship
> getSynonyms(Taxon taxon
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
935 return defaultTaxonService
.getSynonyms(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
940 * @param propertyPaths
942 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHomotypicSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
945 public List
<Synonym
> getHomotypicSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
946 return defaultTaxonService
.getHomotypicSynonymsByHomotypicGroup(taxon
, propertyPaths
);
951 * @param propertyPaths
953 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHeterotypicSynonymyGroups(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
956 public List
<List
<Synonym
>> getHeterotypicSynonymyGroups(Taxon taxon
, List
<String
> propertyPaths
) {
957 return defaultTaxonService
.getHeterotypicSynonymyGroups(taxon
, propertyPaths
);
966 * @param propertyPaths
968 * @see eu.etaxonomy.cdm.api.service.ITaxonService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
971 public Pager
<TaxonBase
> search(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
972 return defaultTaxonService
.search(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
978 * @param infragenericEpithet
979 * @param specificEpithet
980 * @param infraspecificEpithet
985 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
988 public Pager
<TaxonBase
> findTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
989 return defaultTaxonService
.findTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
995 * @param infragenericEpithet
996 * @param specificEpithet
997 * @param infraspecificEpithet
1002 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
1005 public List
<TaxonBase
> listTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
1006 return defaultTaxonService
.listTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
1010 * @param configurator
1012 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNames(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1015 public Pager
<IdentifiableEntity
> findTaxaAndNames(IFindTaxaAndNamesConfigurator configurator
) {
1016 return defaultTaxonService
.findTaxaAndNames(configurator
);
1020 * @param queryString
1021 * @param classification
1023 * @param highlightFragments
1027 * @param propertyPaths
1029 * @throws CorruptIndexException
1030 * @throws IOException
1031 * @throws ParseException
1032 * @throws LuceneMultiSearchException
1034 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByEverythingFullText(java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1038 public Pager
<SearchResult
<TaxonBase
>> findByEverythingFullText(String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1039 return defaultTaxonService
.findByEverythingFullText(queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1044 * @param queryString
1045 * @param classification
1047 * @param highlightFragments
1051 * @param propertyPaths
1053 * @throws CorruptIndexException
1054 * @throws IOException
1055 * @throws ParseException
1056 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1059 public Pager
<SearchResult
<TaxonBase
>> findByFullText(Class
<?
extends TaxonBase
> clazz
, String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1060 return defaultTaxonService
.findByFullText(clazz
, queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1065 * @param statusFilter
1066 * @param classification
1070 * @param propertyPaths
1072 * @throws IOException
1073 * @throws ParseException
1074 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDistribution(java.util.List, java.util.List, eu.etaxonomy.cdm.model.taxon.Classification, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1077 public Pager
<SearchResult
<TaxonBase
>> findByDistribution(List
<NamedArea
> areaFilter
, List
<PresenceAbsenceTermBase
<?
>> statusFilter
, Classification classification
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws IOException
, ParseException
{
1078 return defaultTaxonService
.findByDistribution(areaFilter
, statusFilter
, classification
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1082 * @param searchModes
1083 * @param queryString
1084 * @param classification
1086 * @param distributionStatus
1088 * @param highlightFragments
1092 * @param propertyPaths
1094 * @throws CorruptIndexException
1095 * @throws IOException
1096 * @throws ParseException
1097 * @throws LuceneMultiSearchException
1098 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesByFullText(java.util.EnumSet, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.Set, java.util.Set, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1101 public Pager
<SearchResult
<TaxonBase
>> findTaxaAndNamesByFullText(EnumSet
<TaxaAndNamesSearchMode
> searchModes
, String queryString
, Classification classification
, Set
<NamedArea
> namedAreas
, Set
<PresenceAbsenceTermBase
<?
>> distributionStatus
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1102 return defaultTaxonService
.findTaxaAndNamesByFullText(searchModes
, queryString
, classification
, namedAreas
, distributionStatus
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1107 * @param queryString
1108 * @param classification
1111 * @param highlightFragments
1115 * @param propertyPaths
1117 * @throws CorruptIndexException
1118 * @throws IOException
1119 * @throws ParseException
1120 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDescriptionElementFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1123 public Pager
<SearchResult
<TaxonBase
>> findByDescriptionElementFullText(Class
<?
extends DescriptionElementBase
> clazz
, String queryString
, Classification classification
, List
<Feature
> features
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1124 return defaultTaxonService
.findByDescriptionElementFullText(clazz
, queryString
, classification
, features
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1131 * @param widthOrDuration
1135 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllMedia(eu.etaxonomy.cdm.model.taxon.Taxon, int, int, int, java.lang.String[])
1139 public List
<MediaRepresentation
> getAllMedia(Taxon taxon
, int size
, int height
, int widthOrDuration
, String
[] mimeTypes
) {
1140 return defaultTaxonService
.getAllMedia(taxon
, size
, height
, widthOrDuration
, mimeTypes
);
1145 * @param includeRelationships
1146 * @param limitToGalleries
1147 * @param propertyPath
1150 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxonDescriptionMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, boolean, java.util.List)
1154 public List
<Media
> listTaxonDescriptionMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, boolean limitToGalleries
, List
<String
> propertyPath
) {
1155 return defaultTaxonService
.listTaxonDescriptionMedia(taxon
, includeRelationships
, limitToGalleries
, propertyPath
);
1160 * @param includeRelationships
1161 * @param limitToGalleries
1162 * @param includeTaxonDescriptions
1163 * @param includeOccurrences
1164 * @param includeTaxonNameDescriptions
1165 * @param propertyPath
1167 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.util.List)
1170 public List
<Media
> listMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Boolean limitToGalleries
, Boolean includeTaxonDescriptions
, Boolean includeOccurrences
, Boolean includeTaxonNameDescriptions
, List
<String
> propertyPath
) {
1171 return defaultTaxonService
.listMedia(taxon
, includeRelationships
, limitToGalleries
, includeTaxonDescriptions
, includeOccurrences
, includeTaxonNameDescriptions
, propertyPath
);
1177 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByID(java.util.Set)
1180 public List
<TaxonBase
> findTaxaByID(Set
<Integer
> listOfIDs
) {
1181 return defaultTaxonService
.findTaxaByID(listOfIDs
);
1186 * @param propertyPaths
1188 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxonByUuid(java.util.UUID, java.util.List)
1191 public TaxonBase
findTaxonByUuid(UUID uuid
, List
<String
> propertyPaths
) {
1192 return defaultTaxonService
.findTaxonByUuid(uuid
, propertyPaths
);
1197 * @see eu.etaxonomy.cdm.api.service.ITaxonService#countAllRelationships()
1200 public int countAllRelationships() {
1201 return defaultTaxonService
.countAllRelationships();
1205 * @param propertyPath
1207 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNames(java.util.List)
1210 public List
<TaxonNameBase
> findIdenticalTaxonNames(List
<String
> propertyPath
) {
1211 return defaultTaxonService
.findIdenticalTaxonNames(propertyPath
);
1215 * @param propertyPath
1217 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNameIds(java.util.List)
1220 public List
<TaxonNameBase
> findIdenticalTaxonNameIds(List
<String
> propertyPath
) {
1221 return defaultTaxonService
.findIdenticalTaxonNameIds(propertyPath
);
1227 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getPhylumName(eu.etaxonomy.cdm.model.name.TaxonNameBase)
1230 public String
getPhylumName(TaxonNameBase name
) {
1231 return defaultTaxonService
.getPhylumName(name
);
1237 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym)
1240 public long deleteSynonymRelationships(Synonym syn
) {
1241 return defaultTaxonService
.deleteSynonymRelationships(syn
);
1250 * @param propertyPaths
1253 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listSynonymRelationships(eu.etaxonomy.cdm.model.taxon.TaxonBase, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List, eu.etaxonomy.cdm.model.common.RelationshipBase.Direction)
1256 public List
<SynonymRelationship
> listSynonymRelationships(TaxonBase taxonBase
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
, Direction direction
) {
1257 return defaultTaxonService
.listSynonymRelationships(taxonBase
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
, direction
);
1263 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(java.lang.String)
1266 public Taxon
findBestMatchingTaxon(String taxonName
) {
1267 return defaultTaxonService
.findBestMatchingTaxon(taxonName
);
1273 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
1276 public Taxon
findBestMatchingTaxon(MatchingTaxonConfigurator config
) {
1277 return defaultTaxonService
.findBestMatchingTaxon(config
);
1283 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingSynonym(java.lang.String)
1286 public Synonym
findBestMatchingSynonym(String taxonName
) {
1287 return defaultTaxonService
.findBestMatchingSynonym(taxonName
);
1292 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheTaxon()
1295 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheTaxon() {
1296 return defaultTaxonService
.getUuidAndTitleCacheTaxon();
1301 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheSynonym()
1304 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheSynonym() {
1305 return defaultTaxonService
.getUuidAndTitleCacheSynonym();
1309 * @param configurator
1311 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesForEditor(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1314 public List
<UuidAndTitleCache
<TaxonBase
>> findTaxaAndNamesForEditor(IFindTaxaAndNamesConfigurator configurator
) {
1315 return defaultTaxonService
.findTaxaAndNamesForEditor(configurator
);
1322 * @param doWithMisappliedNames
1324 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, boolean)
1327 public List
<Synonym
> createInferredSynonyms(Taxon taxon
, Classification tree
, SynonymRelationshipType type
, boolean doWithMisappliedNames
) {
1328 return defaultTaxonService
.createInferredSynonyms(taxon
, tree
, type
, doWithMisappliedNames
);
1334 * @param doWithMisappliedNames
1336 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createAllInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, boolean)
1339 public List
<Synonym
> createAllInferredSynonyms(Taxon taxon
, Classification tree
, boolean doWithMisappliedNames
) {
1340 return defaultTaxonService
.createAllInferredSynonyms(taxon
, tree
, doWithMisappliedNames
);
1344 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
1347 public String
deleteSynonym(Synonym arg0
, SynonymDeletionConfigurator arg1
) {
1348 return defaultTaxonService
.deleteSynonym(arg0
, arg1
);
1352 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
1355 public String
deleteSynonym(Synonym arg0
, Taxon arg1
, SynonymDeletionConfigurator arg2
) {
1356 return defaultTaxonService
.deleteSynonym(arg0
, arg1
, arg2
);
1360 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteTaxon(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.api.service.config.TaxonDeletionConfigurator, eu.etaxonomy.cdm.model.taxon.Classification)
1363 public String
deleteTaxon(Taxon arg0
, TaxonDeletionConfigurator arg1
, Classification arg2
) {
1364 return defaultTaxonService
.deleteTaxon(arg0
, arg1
, arg2
);
1368 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
1371 public List
<List
<Synonym
>> getSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
1372 return defaultTaxonService
.getSynonymsByHomotypicGroup(taxon
, propertyPaths
);
1376 public Synonym
changeRelatedTaxonToSynonym(Taxon fromTaxon
, Taxon toTaxon
,
1377 TaxonRelationshipType oldRelationshipType
,
1378 SynonymRelationshipType synonymRelationshipType
)
1379 throws DataChangeNoRollbackException
{
1381 return defaultTaxonService
.changeRelatedTaxonToSynonym(fromTaxon
, toTaxon
, oldRelationshipType
, synonymRelationshipType
);
1385 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1388 public Pager
<Taxon
> pageAcceptedTaxaFor(UUID synonymUuid
, UUID classificationUuid
, Integer pageSize
,
1389 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
1390 return defaultTaxonService
.pageAcceptedTaxaFor(synonymUuid
, classificationUuid
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1394 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1397 public List
<Taxon
> listAcceptedTaxaFor(UUID synonymUuid
, UUID classificationUuid
, Integer pageSize
,
1398 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
1399 return defaultTaxonService
.listAcceptedTaxaFor(synonymUuid
, classificationUuid
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1403 public List
<String
> isDeletable(TaxonBase object
,
1404 DeleteConfiguratorBase config
) {
1405 // TODO Auto-generated method stub