3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.editor
.view
.dataimport
.transientServices
;
12 import java
.io
.IOException
;
13 import java
.util
.Collection
;
14 import java
.util
.EnumSet
;
15 import java
.util
.List
;
18 import java
.util
.UUID
;
20 import org
.apache
.lucene
.index
.CorruptIndexException
;
21 import org
.apache
.lucene
.queryParser
.ParseException
;
22 import org
.hibernate
.LockOptions
;
23 import org
.hibernate
.Session
;
24 import org
.hibernate
.criterion
.Criterion
;
25 import org
.hibernate
.envers
.query
.criteria
.AuditCriterion
;
27 import eu
.etaxonomy
.cdm
.api
.service
.DeleteResult
;
28 import eu
.etaxonomy
.cdm
.api
.service
.ITaxonService
;
29 import eu
.etaxonomy
.cdm
.api
.service
.TaxaAndNamesSearchMode
;
30 import eu
.etaxonomy
.cdm
.api
.service
.UpdateResult
;
31 import eu
.etaxonomy
.cdm
.api
.service
.config
.DeleteConfiguratorBase
;
32 import eu
.etaxonomy
.cdm
.api
.service
.config
.IFindTaxaAndNamesConfigurator
;
33 import eu
.etaxonomy
.cdm
.api
.service
.config
.IIdentifiableEntityServiceConfigurator
;
34 import eu
.etaxonomy
.cdm
.api
.service
.config
.IncludedTaxonConfiguration
;
35 import eu
.etaxonomy
.cdm
.api
.service
.config
.MatchingTaxonConfigurator
;
36 import eu
.etaxonomy
.cdm
.api
.service
.config
.SynonymDeletionConfigurator
;
37 import eu
.etaxonomy
.cdm
.api
.service
.config
.TaxonDeletionConfigurator
;
38 import eu
.etaxonomy
.cdm
.api
.service
.dto
.FindByIdentifierDTO
;
39 import eu
.etaxonomy
.cdm
.api
.service
.dto
.IncludedTaxaDTO
;
40 import eu
.etaxonomy
.cdm
.api
.service
.exception
.DataChangeNoRollbackException
;
41 import eu
.etaxonomy
.cdm
.api
.service
.exception
.HomotypicalGroupChangeException
;
42 import eu
.etaxonomy
.cdm
.api
.service
.pager
.Pager
;
43 import eu
.etaxonomy
.cdm
.api
.service
.search
.LuceneMultiSearchException
;
44 import eu
.etaxonomy
.cdm
.api
.service
.search
.SearchResult
;
45 import eu
.etaxonomy
.cdm
.api
.service
.util
.TaxonRelationshipEdge
;
46 import eu
.etaxonomy
.cdm
.common
.monitor
.IProgressMonitor
;
47 import eu
.etaxonomy
.cdm
.model
.common
.Annotation
;
48 import eu
.etaxonomy
.cdm
.model
.common
.DefinedTerm
;
49 import eu
.etaxonomy
.cdm
.model
.common
.ISourceable
;
50 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableEntity
;
51 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableSource
;
52 import eu
.etaxonomy
.cdm
.model
.common
.LSID
;
53 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
54 import eu
.etaxonomy
.cdm
.model
.common
.Marker
;
55 import eu
.etaxonomy
.cdm
.model
.common
.MarkerType
;
56 import eu
.etaxonomy
.cdm
.model
.common
.OrderedTermVocabulary
;
57 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
;
58 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
.Direction
;
59 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionElementBase
;
60 import eu
.etaxonomy
.cdm
.model
.description
.Feature
;
61 import eu
.etaxonomy
.cdm
.model
.description
.PresenceAbsenceTerm
;
62 import eu
.etaxonomy
.cdm
.model
.location
.NamedArea
;
63 import eu
.etaxonomy
.cdm
.model
.media
.Media
;
64 import eu
.etaxonomy
.cdm
.model
.media
.MediaRepresentation
;
65 import eu
.etaxonomy
.cdm
.model
.media
.Rights
;
66 import eu
.etaxonomy
.cdm
.model
.name
.HomotypicalGroup
;
67 import eu
.etaxonomy
.cdm
.model
.name
.Rank
;
68 import eu
.etaxonomy
.cdm
.model
.name
.TaxonNameBase
;
69 import eu
.etaxonomy
.cdm
.model
.reference
.Reference
;
70 import eu
.etaxonomy
.cdm
.model
.taxon
.Classification
;
71 import eu
.etaxonomy
.cdm
.model
.taxon
.Synonym
;
72 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationship
;
73 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationshipType
;
74 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
75 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonBase
;
76 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonNode
;
77 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationship
;
78 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationshipType
;
79 import eu
.etaxonomy
.cdm
.model
.view
.AuditEvent
;
80 import eu
.etaxonomy
.cdm
.model
.view
.AuditEventRecord
;
81 import eu
.etaxonomy
.cdm
.persistence
.dao
.common
.AuditEventSort
;
82 import eu
.etaxonomy
.cdm
.persistence
.dto
.UuidAndTitleCache
;
83 import eu
.etaxonomy
.cdm
.persistence
.fetch
.CdmFetch
;
84 import eu
.etaxonomy
.cdm
.persistence
.query
.Grouping
;
85 import eu
.etaxonomy
.cdm
.persistence
.query
.MatchMode
;
86 import eu
.etaxonomy
.cdm
.persistence
.query
.OrderHint
;
87 import eu
.etaxonomy
.cdm
.strategy
.cache
.common
.IIdentifiableEntityCacheStrategy
;
88 import eu
.etaxonomy
.cdm
.strategy
.match
.IMatchStrategy
;
89 import eu
.etaxonomy
.cdm
.strategy
.merge
.IMergeStrategy
;
96 public class TransientTaxonService
implements ITaxonService
{
98 private final ITaxonService defaultService
;
101 * @param defaultTaxonService
103 public TransientTaxonService(ITaxonService defaultTaxonService
) {
104 this.defaultService
= defaultTaxonService
;
112 * @param propertyPaths
114 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
117 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(TaxonBase t
, Integer pageSize
, Integer pageNumber
, AuditEventSort sort
, List
<String
> propertyPaths
) {
118 return defaultService
.pageAuditEvents(t
, pageSize
, pageNumber
, sort
, propertyPaths
);
122 * @param annotatedObj
127 * @param propertyPaths
129 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
132 public Pager
<Annotation
> getAnnotations(TaxonBase annotatedObj
, MarkerType status
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
133 return defaultService
.getAnnotations(annotatedObj
, status
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
138 * @see eu.etaxonomy.cdm.api.service.IService#clear()
141 public void clear() {
142 defaultService
.clear();
148 * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
151 public void lock(TaxonBase t
, LockOptions lockOptions
) {
152 defaultService
.lock(t
, lockOptions
);
158 * @param propertyPaths
159 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
162 public void refresh(TaxonBase t
, LockOptions lockOptions
, List
<String
> propertyPaths
) {
163 defaultService
.refresh(t
, lockOptions
, propertyPaths
);
168 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
171 public void updateTitleCache() {
172 defaultService
.updateTitleCache();
178 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
181 public AuditEventRecord
<TaxonBase
> getNextAuditEvent(TaxonBase t
) {
182 return defaultService
.getNextAuditEvent(t
);
186 * @param annotatableEntity
191 * @param propertyPaths
193 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
196 public Pager
<Marker
> getMarkers(TaxonBase annotatableEntity
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
197 return defaultService
.getMarkers(annotatableEntity
, technical
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
203 * @param cacheStrategy
205 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
208 public void updateTitleCache(Class
<?
extends TaxonBase
> clazz
, Integer stepSize
, IIdentifiableEntityCacheStrategy
<TaxonBase
> cacheStrategy
, IProgressMonitor monitor
) {
209 defaultService
.updateTitleCache(clazz
, stepSize
, cacheStrategy
, monitor
);
215 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
218 public AuditEventRecord
<TaxonBase
> getPreviousAuditEvent(TaxonBase t
) {
219 return defaultService
.getPreviousAuditEvent(t
);
225 * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
228 public int count(Class
<?
extends TaxonBase
> clazz
) {
229 return defaultService
.count(clazz
);
240 * @param propertyPaths
242 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
245 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(Class
<?
extends TaxonBase
> clazz
, AuditEvent from
, AuditEvent to
, List
<AuditCriterion
> criteria
, Integer pageSize
, Integer pageValue
, AuditEventSort sort
, List
<String
> propertyPaths
) {
246 return defaultService
.pageAuditEvents(clazz
, from
, to
, criteria
, pageSize
, pageValue
, sort
, propertyPaths
);
252 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
255 public TaxonBase
find(LSID lsid
) {
256 return defaultService
.find(lsid
);
260 * @param persistentObject
262 * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
265 public DeleteResult
delete(TaxonBase persistentObject
) {
266 return defaultService
.delete(persistentObject
);
274 * @param propertyPaths
276 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
279 public List
<Object
[]> groupMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
280 return defaultService
.groupMarkers(clazz
, technical
, pageSize
, pageNumber
, propertyPaths
);
286 * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
289 public boolean exists(UUID uuid
) {
290 return defaultService
.exists(uuid
);
298 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
301 public TaxonBase
replace(TaxonBase x
, TaxonBase y
) {
302 return defaultService
.replace(x
, y
);
308 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
311 public List
<TaxonBase
> find(Set
<UUID
> uuidSet
) {
312 return defaultService
.find(uuidSet
);
319 * @param propertyPaths
321 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
324 public Pager
<IdentifiableSource
> getSources(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
325 return defaultService
.getSources(t
, pageSize
, pageNumber
, propertyPaths
);
331 * @param onlyWithChildren
334 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.reference.Reference, eu.etaxonomy.cdm.persistence.fetch.CdmFetch, boolean)
338 public List
<Taxon
> getRootTaxa(Reference sec
, CdmFetch cdmFetch
, boolean onlyWithChildren
) {
339 return defaultService
.getRootTaxa(sec
, cdmFetch
, onlyWithChildren
);
345 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
348 public TaxonBase
find(UUID uuid
) {
349 return defaultService
.find(uuid
);
355 * @param onlyWithChildren
356 * @param withMisapplications
357 * @param propertyPaths
360 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.name.Rank, eu.etaxonomy.cdm.model.reference.Reference, boolean, boolean, java.util.List)
364 public List
<Taxon
> getRootTaxa(Rank rank
, Reference sec
, boolean onlyWithChildren
, boolean withMisapplications
, List
<String
> propertyPaths
) {
365 return defaultService
.getRootTaxa(rank
, sec
, onlyWithChildren
, withMisapplications
, propertyPaths
);
371 * @see eu.etaxonomy.cdm.api.service.IService#find(int)
374 public TaxonBase
find(int id
) {
375 return defaultService
.find(id
);
382 * @param propertyPaths
384 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
387 public Pager
<Rights
> getRights(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
388 return defaultService
.getRights(t
, pageSize
, pageNumber
, propertyPaths
);
395 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
398 public int countMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
) {
399 return defaultService
.countMarkers(clazz
, technical
);
405 * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
408 public List
<TaxonBase
> findById(Set
<Integer
> idSet
) {
409 return defaultService
.findById(idSet
);
417 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
420 public ISourceable
getSourcedObjectByIdInSource(Class clazz
, String idInSource
, String idNamespace
) {
421 return defaultService
.getSourcedObjectByIdInSource(clazz
, idInSource
, idNamespace
);
426 * @see eu.etaxonomy.cdm.api.service.IService#getSession()
429 public Session
getSession() {
430 return defaultService
.getSession();
435 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
438 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCache() {
439 return defaultService
.getUuidAndTitleCache();
447 * @param propertyPaths
449 * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
452 public List
<Object
[]> group(Class
<?
extends TaxonBase
> clazz
, Integer limit
, Integer start
, List
<Grouping
> groups
, List
<String
> propertyPaths
) {
453 return defaultService
.group(clazz
, limit
, start
, groups
, propertyPaths
);
460 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllRelationships(int, int)
463 public List
<RelationshipBase
> getAllRelationships(int limit
, int start
) {
464 return defaultService
.getAllRelationships(limit
, start
);
475 * @param propertyPaths
477 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
480 public Pager
<TaxonBase
> findByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
481 return defaultService
.findByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
487 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getTaxonRelationshipTypeVocabulary()
491 public OrderedTermVocabulary
<TaxonRelationshipType
> getTaxonRelationshipTypeVocabulary() {
492 return defaultService
.getTaxonRelationshipTypeVocabulary();
499 * @see eu.etaxonomy.cdm.api.service.ITaxonService#searchTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)
502 public List
<TaxonBase
> searchTaxaByName(String name
, Reference sec
) {
503 return defaultService
.searchTaxaByName(name
, sec
);
511 public UpdateResult
swapSynonymAndAcceptedTaxon(Synonym arg0
, Taxon arg1
) {
512 return defaultService
.swapSynonymAndAcceptedTaxon(arg0
, arg1
);
520 * @param propertyPaths
522 * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
525 public <S
extends TaxonBase
> List
<S
> list(Class
<S
> type
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
526 return defaultService
.list(type
, limit
, start
, orderHints
, propertyPaths
);
530 * @param configurator
532 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
535 public Pager
<TaxonBase
> findByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
536 return defaultService
.findByTitle(configurator
);
541 * @param acceptedTaxon
542 * @param deleteSynonym
543 * @param copyCitationInfo
545 * @param microCitation
547 * @throws HomotypicalGroupChangeException
548 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
551 public Taxon
changeSynonymToAcceptedTaxon(Synonym synonym
, Taxon acceptedTaxon
, boolean deleteSynonym
, boolean copyCitationInfo
, Reference citation
, String microCitation
) throws HomotypicalGroupChangeException
{
552 return defaultService
.changeSynonymToAcceptedTaxon(synonym
, acceptedTaxon
, deleteSynonym
, copyCitationInfo
, citation
, microCitation
);
561 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
564 public Integer
countByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
) {
565 return defaultService
.countByTitle(clazz
, queryString
, matchmode
, criteria
);
571 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
574 public TaxonBase
load(UUID uuid
) {
575 return defaultService
.load(uuid
);
580 * @param propertyPaths
582 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
585 public TaxonBase
load(UUID uuid
, List
<String
> propertyPaths
) {
586 return defaultService
.load(uuid
, propertyPaths
);
590 * @param configurator
592 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
595 public Integer
countByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
596 return defaultService
.countByTitle(configurator
);
600 * @param transientObject
602 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
605 public TaxonBase
merge(TaxonBase transientObject
) {
606 return defaultService
.merge(transientObject
);
617 * @param propertyPaths
619 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
622 public List
<TaxonBase
> listByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
623 return defaultService
.listByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
631 * @param propertyPaths
633 * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
636 public <S
extends TaxonBase
> Pager
<S
> page(Class
<S
> type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
637 return defaultService
.page(type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
641 * @param persistentObject
643 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
646 public UUID
refresh(TaxonBase persistentObject
) {
647 return defaultService
.refresh(persistentObject
);
653 * @param taxonRelationshipType
655 * @param microReference
657 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToRelatedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
660 public Taxon
changeSynonymToRelatedTaxon(Synonym synonym
, Taxon toTaxon
, TaxonRelationshipType taxonRelationshipType
, Reference reference
, String microReference
) {
661 return defaultService
.changeSynonymToRelatedTaxon(synonym
, toTaxon
, taxonRelationshipType
, reference
, microReference
);
672 * @param propertyPaths
674 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
677 public List
<TaxonBase
> listByReferenceTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
678 return defaultService
.listByReferenceTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
686 * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
689 public List
<TaxonBase
> rows(String tableName
, int limit
, int start
) {
690 return defaultService
.rows(tableName
, limit
, start
);
694 * @param newInstances
696 * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
699 public Map
<UUID
, TaxonBase
> save(Collection
<TaxonBase
> newInstances
) {
707 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
710 public long deleteSynonymRelationships(Synonym syn
, Taxon taxon
) {
711 return defaultService
.deleteSynonymRelationships(syn
, taxon
);
717 * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
720 public UUID
save(TaxonBase newInstance
) {
725 * @param transientObject
727 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
730 public UUID
saveOrUpdate(TaxonBase transientObject
) {
736 * @param newHomotypicalGroup
738 * @param removeFromOtherTaxa
739 * @param setBasionymRelationIfApplicable
740 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeHomotypicalGroupOfSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.name.HomotypicalGroup, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean)
743 public void changeHomotypicalGroupOfSynonym(Synonym synonym
, HomotypicalGroup newHomotypicalGroup
, Taxon targetTaxon
, boolean removeFromOtherTaxa
, boolean setBasionymRelationIfApplicable
) {
744 defaultService
.changeHomotypicalGroupOfSynonym(synonym
, newHomotypicalGroup
, targetTaxon
, removeFromOtherTaxa
, setBasionymRelationIfApplicable
);
748 * @param transientObjects
750 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
753 public Map
<UUID
, TaxonBase
> saveOrUpdate(Collection
<TaxonBase
> transientObjects
) {
758 * @param transientObject
760 * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
763 public UUID
update(TaxonBase transientObject
) {
764 return defaultService
.update(transientObject
);
769 * @param includeProperties
773 * @param propertyPaths
775 * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
778 public List
<TaxonBase
> list(TaxonBase example
, Set
<String
> includeProperties
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
779 return defaultService
.list(example
, includeProperties
, limit
, start
, orderHints
, propertyPaths
);
783 * @param oldSynonymRelation
785 * @param moveHomotypicGroup
786 * @param newSynonymRelationshipType
787 * @param newReference
788 * @param newReferenceDetail
789 * @param keepReference
791 * @throws HomotypicalGroupChangeException
792 * @see eu.etaxonomy.cdm.api.service.ITaxonService#moveSynonymToAnotherTaxon(eu.etaxonomy.cdm.model.taxon.SynonymRelationship, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String, boolean)
795 public SynonymRelationship
moveSynonymToAnotherTaxon(SynonymRelationship oldSynonymRelation
, Taxon newTaxon
, boolean moveHomotypicGroup
, SynonymRelationshipType newSynonymRelationshipType
, Reference newReference
, String newReferenceDetail
, boolean keepReference
) throws HomotypicalGroupChangeException
{
796 return defaultService
.moveSynonymToAnotherTaxon(oldSynonymRelation
, newTaxon
, moveHomotypicGroup
, newSynonymRelationshipType
, newReference
, newReferenceDetail
, keepReference
);
801 * @param matchStrategy
802 * @param mergeStrategy
804 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
807 public int deduplicate(Class
<?
extends TaxonBase
> clazz
, IMatchStrategy matchStrategy
, IMergeStrategy mergeStrategy
) {
808 return defaultService
.deduplicate(clazz
, matchStrategy
, mergeStrategy
);
819 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
822 public Pager
<TaxonBase
> findTitleCache(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, MatchMode matchMode
) {
823 return defaultService
.findTitleCache(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, matchMode
);
832 * @param propertyPaths
834 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
837 public List
<TaxonRelationship
> listToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
838 return defaultService
.listToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
847 * @param propertyPaths
849 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
852 public Pager
<TaxonRelationship
> pageToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
853 return defaultService
.pageToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
862 * @param propertyPaths
864 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
867 public List
<TaxonRelationship
> listFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
868 return defaultService
.listFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
877 * @param propertyPaths
879 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
882 public Pager
<TaxonRelationship
> pageFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
883 return defaultService
.pageFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
888 * @param includeRelationships
892 * @param propertyPaths
894 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listRelatedTaxa(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List)
897 public Set
<Taxon
> listRelatedTaxa(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Integer maxDepth
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
898 return defaultService
.listRelatedTaxa(taxon
, includeRelationships
, maxDepth
, limit
, start
, propertyPaths
);
905 * @param propertyPaths
907 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listClassifications(eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
910 public List
<Classification
> listClassifications(TaxonBase taxonBase
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
911 return defaultService
.listClassifications(taxonBase
, limit
, start
, propertyPaths
);
920 * @param propertyPaths
922 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
925 public Pager
<SynonymRelationship
> getSynonyms(Synonym synonym
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
926 return defaultService
.getSynonyms(synonym
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
935 * @param propertyPaths
937 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
940 public Pager
<SynonymRelationship
> getSynonyms(Taxon taxon
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
941 return defaultService
.getSynonyms(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
946 * @param propertyPaths
948 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHomotypicSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
951 public List
<Synonym
> getHomotypicSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
952 return defaultService
.getHomotypicSynonymsByHomotypicGroup(taxon
, propertyPaths
);
957 * @param propertyPaths
959 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHeterotypicSynonymyGroups(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
962 public List
<List
<Synonym
>> getHeterotypicSynonymyGroups(Taxon taxon
, List
<String
> propertyPaths
) {
963 return defaultService
.getHeterotypicSynonymyGroups(taxon
, propertyPaths
);
972 * @param propertyPaths
974 * @see eu.etaxonomy.cdm.api.service.ITaxonService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
977 public Pager
<TaxonBase
> search(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
978 return defaultService
.search(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
984 * @param infragenericEpithet
985 * @param specificEpithet
986 * @param infraspecificEpithet
991 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
994 public Pager
<TaxonBase
> findTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
995 return defaultService
.findTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
1001 * @param infragenericEpithet
1002 * @param specificEpithet
1003 * @param infraspecificEpithet
1008 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
1011 public List
<TaxonBase
> listTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
1012 return defaultService
.listTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
1016 * @param configurator
1018 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNames(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1021 public Pager
<IdentifiableEntity
> findTaxaAndNames(IFindTaxaAndNamesConfigurator configurator
) {
1022 return defaultService
.findTaxaAndNames(configurator
);
1026 * @param queryString
1027 * @param classification
1029 * @param highlightFragments
1033 * @param propertyPaths
1035 * @throws CorruptIndexException
1036 * @throws IOException
1037 * @throws ParseException
1038 * @throws LuceneMultiSearchException
1040 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByEverythingFullText(java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1044 public Pager
<SearchResult
<TaxonBase
>> findByEverythingFullText(String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1045 return defaultService
.findByEverythingFullText(queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1050 * @param queryString
1051 * @param classification
1053 * @param highlightFragments
1057 * @param propertyPaths
1059 * @throws CorruptIndexException
1060 * @throws IOException
1061 * @throws ParseException
1062 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1065 public Pager
<SearchResult
<TaxonBase
>> findByFullText(Class
<?
extends TaxonBase
> clazz
, String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1066 return defaultService
.findByFullText(clazz
, queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1071 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDistribution(java.util.List, java.util.List, eu.etaxonomy.cdm.model.taxon.Classification, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1074 public Pager
<SearchResult
<TaxonBase
>> findByDistribution(List
<NamedArea
> areaFilter
,
1075 List
<PresenceAbsenceTerm
> statusFilter
, Classification classification
, Integer pageSize
,
1076 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws IOException
,
1078 return defaultService
.findByDistribution(areaFilter
, statusFilter
, classification
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1083 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesByFullText(java.util.EnumSet, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.Set, java.util.Set, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1086 public Pager
<SearchResult
<TaxonBase
>> findTaxaAndNamesByFullText(EnumSet
<TaxaAndNamesSearchMode
> searchModes
,
1087 String queryString
, Classification classification
, Set
<NamedArea
> namedAreas
,
1088 Set
<PresenceAbsenceTerm
> distributionStatus
, List
<Language
> languages
, boolean highlightFragments
,
1089 Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
)
1090 throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1091 return defaultService
.findTaxaAndNamesByFullText(searchModes
, queryString
, classification
, namedAreas
, distributionStatus
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1096 * @param queryString
1097 * @param classification
1100 * @param highlightFragments
1104 * @param propertyPaths
1106 * @throws CorruptIndexException
1107 * @throws IOException
1108 * @throws ParseException
1109 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDescriptionElementFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1112 public Pager
<SearchResult
<TaxonBase
>> findByDescriptionElementFullText(Class
<?
extends DescriptionElementBase
> clazz
, String queryString
, Classification classification
, List
<Feature
> features
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1113 return defaultService
.findByDescriptionElementFullText(clazz
, queryString
, classification
, features
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1120 * @param widthOrDuration
1124 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllMedia(eu.etaxonomy.cdm.model.taxon.Taxon, int, int, int, java.lang.String[])
1128 public List
<MediaRepresentation
> getAllMedia(Taxon taxon
, int size
, int height
, int widthOrDuration
, String
[] mimeTypes
) {
1129 return defaultService
.getAllMedia(taxon
, size
, height
, widthOrDuration
, mimeTypes
);
1134 * @param includeRelationships
1135 * @param limitToGalleries
1136 * @param propertyPath
1139 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxonDescriptionMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, boolean, java.util.List)
1143 public List
<Media
> listTaxonDescriptionMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, boolean limitToGalleries
, List
<String
> propertyPath
) {
1144 return defaultService
.listTaxonDescriptionMedia(taxon
, includeRelationships
, limitToGalleries
, propertyPath
);
1149 * @param includeRelationships
1150 * @param limitToGalleries
1151 * @param includeTaxonDescriptions
1152 * @param includeOccurrences
1153 * @param includeTaxonNameDescriptions
1154 * @param propertyPath
1156 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.util.List)
1159 public List
<Media
> listMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Boolean limitToGalleries
, Boolean includeTaxonDescriptions
, Boolean includeOccurrences
, Boolean includeTaxonNameDescriptions
, List
<String
> propertyPath
) {
1160 return defaultService
.listMedia(taxon
, includeRelationships
, limitToGalleries
, includeTaxonDescriptions
, includeOccurrences
, includeTaxonNameDescriptions
, propertyPath
);
1166 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByID(java.util.Set)
1169 public List
<TaxonBase
> findTaxaByID(Set
<Integer
> listOfIDs
) {
1170 return defaultService
.findTaxaByID(listOfIDs
);
1175 * @param propertyPaths
1177 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxonByUuid(java.util.UUID, java.util.List)
1180 public TaxonBase
findTaxonByUuid(UUID uuid
, List
<String
> propertyPaths
) {
1181 return defaultService
.findTaxonByUuid(uuid
, propertyPaths
);
1186 * @see eu.etaxonomy.cdm.api.service.ITaxonService#countAllRelationships()
1189 public int countAllRelationships() {
1190 return defaultService
.countAllRelationships();
1194 * @param propertyPath
1196 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNames(java.util.List)
1199 public List
<TaxonNameBase
> findIdenticalTaxonNames(List
<String
> propertyPath
) {
1200 return defaultService
.findIdenticalTaxonNames(propertyPath
);
1204 * @param propertyPath
1206 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNameIds(java.util.List)
1209 public List
<TaxonNameBase
> findIdenticalTaxonNameIds(List
<String
> propertyPath
) {
1210 return defaultService
.findIdenticalTaxonNameIds(propertyPath
);
1216 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getPhylumName(eu.etaxonomy.cdm.model.name.TaxonNameBase)
1219 public String
getPhylumName(TaxonNameBase name
) {
1220 return defaultService
.getPhylumName(name
);
1226 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym)
1229 public long deleteSynonymRelationships(Synonym syn
) {
1230 return defaultService
.deleteSynonymRelationships(syn
);
1239 * @param propertyPaths
1242 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listSynonymRelationships(eu.etaxonomy.cdm.model.taxon.TaxonBase, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List, eu.etaxonomy.cdm.model.common.RelationshipBase.Direction)
1245 public List
<SynonymRelationship
> listSynonymRelationships(TaxonBase taxonBase
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
, Direction direction
) {
1246 return defaultService
.listSynonymRelationships(taxonBase
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
, direction
);
1252 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(java.lang.String)
1255 public Taxon
findBestMatchingTaxon(String taxonName
) {
1256 return defaultService
.findBestMatchingTaxon(taxonName
);
1262 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
1265 public Taxon
findBestMatchingTaxon(MatchingTaxonConfigurator config
) {
1266 return defaultService
.findBestMatchingTaxon(config
);
1272 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingSynonym(java.lang.String)
1275 public Synonym
findBestMatchingSynonym(String taxonName
) {
1276 return defaultService
.findBestMatchingSynonym(taxonName
);
1281 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheTaxon()
1284 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheTaxon() {
1285 return defaultService
.getUuidAndTitleCacheTaxon();
1290 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheSynonym()
1293 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheSynonym() {
1294 return defaultService
.getUuidAndTitleCacheSynonym();
1298 * @param configurator
1300 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesForEditor(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1303 public List
<UuidAndTitleCache
<IdentifiableEntity
>> findTaxaAndNamesForEditor(IFindTaxaAndNamesConfigurator configurator
) {
1304 return defaultService
.findTaxaAndNamesForEditor(configurator
);
1311 * @param doWithMisappliedNames
1313 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, boolean)
1316 public List
<Synonym
> createInferredSynonyms(Taxon taxon
, Classification tree
, SynonymRelationshipType type
, boolean doWithMisappliedNames
) {
1317 return defaultService
.createInferredSynonyms(taxon
, tree
, type
, doWithMisappliedNames
);
1323 * @param doWithMisappliedNames
1325 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createAllInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, boolean)
1328 public List
<Synonym
> createAllInferredSynonyms(Taxon taxon
, Classification tree
, boolean doWithMisappliedNames
) {
1329 return defaultService
.createAllInferredSynonyms(taxon
, tree
, doWithMisappliedNames
);
1333 public DeleteResult
deleteSynonym(Synonym arg0
, SynonymDeletionConfigurator arg1
) {
1334 return defaultService
.deleteSynonym(arg0
, arg1
);
1338 public DeleteResult
deleteSynonym(Synonym arg0
, Taxon arg1
, SynonymDeletionConfigurator arg2
) {
1339 return defaultService
.deleteSynonym(arg0
, arg1
, arg2
);
1343 public List
<List
<Synonym
>> getSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
1344 return defaultService
.getSynonymsByHomotypicGroup(taxon
, propertyPaths
);
1348 public Synonym
changeRelatedTaxonToSynonym(Taxon fromTaxon
, Taxon toTaxon
,
1349 TaxonRelationshipType oldRelationshipType
,
1350 SynonymRelationshipType synonymRelationshipType
)
1351 throws DataChangeNoRollbackException
{
1353 return defaultService
.changeRelatedTaxonToSynonym(fromTaxon
, toTaxon
, oldRelationshipType
, synonymRelationshipType
);
1357 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1360 public Pager
<Taxon
> pageAcceptedTaxaFor(UUID synonymUuid
, UUID classificationUuid
, Integer pageSize
,
1361 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
1362 return defaultService
.pageAcceptedTaxaFor(synonymUuid
, classificationUuid
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1366 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1369 public List
<Taxon
> listAcceptedTaxaFor(UUID synonymUuid
, UUID classificationUuid
, Integer pageSize
,
1370 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
1371 return defaultService
.listAcceptedTaxaFor(synonymUuid
, classificationUuid
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1375 public DeleteResult
isDeletable(TaxonBase object
,
1376 DeleteConfiguratorBase config
) {
1377 // TODO Auto-generated method stub
1382 public IncludedTaxaDTO
listIncludedTaxa(UUID taxonUuid
,
1383 IncludedTaxonConfiguration configuration
) {
1384 // TODO Auto-generated method stub
1389 public TaxonBase
findWithoutFlush(UUID uuid
) {
1390 return defaultService
.findWithoutFlush(uuid
);
1394 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
1397 public List
<TaxonBase
> findTaxaByName(MatchingTaxonConfigurator config
) {
1398 return defaultService
.findTaxaByName(config
);
1402 public <S
extends TaxonBase
> Pager
<FindByIdentifierDTO
<S
>> findByIdentifier(Class
<S
> clazz
, String identifier
, DefinedTerm identifierType
, MatchMode matchmode
, boolean includeEntity
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
){
1403 return defaultService
.findByIdentifier(clazz
, identifier
, identifierType
, matchmode
, includeEntity
, pageSize
, pageNumber
, propertyPaths
);
1407 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByIdentifier(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.common.DefinedTerm, eu.etaxonomy.cdm.model.taxon.TaxonNode, eu.etaxonomy.cdm.persistence.query.MatchMode, boolean, java.lang.Integer, java.lang.Integer, java.util.List)
1410 public <S
extends TaxonBase
> Pager
<FindByIdentifierDTO
<S
>> findByIdentifier(Class
<S
> clazz
, String identifier
,
1411 DefinedTerm identifierType
, TaxonNode subtreeFilter
, MatchMode matchmode
, boolean includeEntity
,
1412 Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
1413 return defaultService
.findByIdentifier(clazz
, identifier
, identifierType
, subtreeFilter
, matchmode
, includeEntity
, pageSize
, pageNumber
, propertyPaths
);
1423 public SynonymRelationship
moveSynonymToAnotherTaxon(
1424 SynonymRelationship oldSynonymRelation
, UUID newTaxonUUID
,
1425 boolean moveHomotypicGroup
,
1426 SynonymRelationshipType newSynonymRelationshipType
,
1427 Reference reference
, String referenceDetail
, boolean keepReference
)
1428 throws HomotypicalGroupChangeException
{
1430 return defaultService
.moveSynonymToAnotherTaxon(oldSynonymRelation
, newTaxonUUID
, moveHomotypicGroup
, newSynonymRelationshipType
, reference
, referenceDetail
, keepReference
);
1438 public DeleteResult
delete(UUID arg0
) {
1439 return defaultService
.delete(arg0
);
1446 public DeleteResult
deleteSynonym(UUID arg0
, UUID arg1
, SynonymDeletionConfigurator arg2
) {
1447 return defaultService
.deleteSynonym(arg0
, arg1
, arg2
);
1452 public UpdateResult
moveFactualDateToAnotherTaxon(UUID arg0
, UUID arg1
) {
1453 return defaultService
.moveFactualDateToAnotherTaxon(arg0
, arg1
);
1461 public DeleteResult
deleteTaxon(UUID arg0
, TaxonDeletionConfigurator arg1
, UUID arg2
) {
1462 return defaultService
.deleteTaxon(arg0
, arg1
, arg2
);
1469 public UpdateResult
swapSynonymAndAcceptedTaxon(UUID arg0
, UUID arg1
) {
1470 return defaultService
.swapSynonymAndAcceptedTaxon(arg0
, arg1
);