eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/TissueSampleGeneralDetailElement.java

   1 /**
   2 * Copyright (C) 2013 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9 package eu.etaxonomy.taxeditor.ui.section.occurrence.dna;
  10
  11 import org.apache.log4j.Logger;
  12
  13 import eu.etaxonomy.cdm.api.service.IVocabularyService;
  14 import eu.etaxonomy.cdm.model.agent.AgentBase;
  15 import eu.etaxonomy.cdm.model.agent.Institution;
  16 import eu.etaxonomy.cdm.model.common.DefinedTerm;
  17 import eu.etaxonomy.cdm.model.common.TermType;
  18 import eu.etaxonomy.cdm.model.common.TermVocabulary;
  19 import eu.etaxonomy.cdm.model.common.TimePeriod;
  20 import eu.etaxonomy.cdm.model.common.VocabularyEnum;
  21 import eu.etaxonomy.cdm.model.molecular.DnaSample;
  22 import eu.etaxonomy.cdm.model.occurrence.Collection;
  23 import eu.etaxonomy.cdm.model.occurrence.PreservationMethod;
  24 import eu.etaxonomy.taxeditor.store.CdmStore;
  25 import eu.etaxonomy.taxeditor.ui.combo.TermComboElement;
  26 import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory;
  27 import eu.etaxonomy.taxeditor.ui.element.CheckboxElement;
  28 import eu.etaxonomy.taxeditor.ui.element.ICdmFormElement;
  29 import eu.etaxonomy.taxeditor.ui.element.TextWithLabelElement;
  30 import eu.etaxonomy.taxeditor.ui.element.TimePeriodElement;
  31 import eu.etaxonomy.taxeditor.ui.section.AbstractCdmDetailElement;
  32 import eu.etaxonomy.taxeditor.ui.selection.EntitySelectionElement;
  33
  34 /**
  35  * @author pplitzner
  36  * @date 16.12.2013
  37  *
  38  */
  39 public class TissueSampleGeneralDetailElement extends AbstractCdmDetailElement<DnaSample> {
  40
  41     private final TermVocabulary plantKindOfUnitVocabulary = CdmStore.getService(IVocabularyService.class).find(VocabularyEnum.PlantKindOfUnit.getUuid());
  42
  43     static private final Logger logger = Logger.getLogger(TissueSampleGeneralDetailElement.class);
  44
  45     private TermComboElement<DefinedTerm> comboKindOfTissue;
  46     private EntitySelectionElement<Institution> selectionInstitution;
  47     private EntitySelectionElement<AgentBase> selectionStaff;
  48     private TimePeriodElement datePreparation;
  49     private TermComboElement<DefinedTerm> comboPreservationMedium;
  50     private EntitySelectionElement<Collection> selectionCollection;
  51     private TextWithLabelElement textAccessionNumber;
  52     private TextWithLabelElement textBarcode;
  53     private CheckboxElement checkIsPublish;
  54
  55
  56     /**
  57      * @param formFactory
  58      * @param formElement
  59      */
  60     public TissueSampleGeneralDetailElement(CdmFormFactory formFactory, ICdmFormElement formElement) {
  61         super(formFactory, formElement);
  62     }
  63
  64     /*
  65      * (non-Javadoc)
  66      *
  67      * @see
  68      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
  69      * (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
  70      */
  71     @Override
  72     protected void createControls(ICdmFormElement formElement, DnaSample entity, int style) {
  73         comboKindOfTissue = formFactory.createDefinedTermComboElement(plantKindOfUnitVocabulary, formElement, "Kind Of Tissue", entity.getKindOfUnit(), style);
  74         TimePeriod preparationDate = null;
  75         DefinedTerm preservationMedium = null;
  76         AgentBase<?> staff = null;
  77         Institution institution = null;
  78         if(entity.getDerivedFrom()!=null){
  79             staff = entity.getDerivedFrom().getActor();
  80             preparationDate = entity.getDerivedFrom().getTimeperiod();
  81             institution = entity.getDerivedFrom().getInstitution();
  82         }
  83         if(entity.getPreservation()!=null){
  84             preservationMedium = entity.getPreservation().getMedium();
  85         }
  86         selectionInstitution = formFactory.createSelectionElement(Institution.class, getConversationHolder(), formElement, "Institution", institution, EntitySelectionElement.ALL, style);
  87         selectionStaff = formFactory.createSelectionElement(AgentBase.class, getConversationHolder(), formElement, "Staff", staff, EntitySelectionElement.ALL,style);
  88         datePreparation = formFactory.createTimePeriodElement(formElement, "Preparation date", preparationDate, style);
  89         comboPreservationMedium = formFactory.createDefinedTermComboElement(TermType.MaterialOrMethod, formElement, "Preservation medium", preservationMedium, style);
  90         selectionCollection = formFactory.createSelectionElement(Collection.class, getConversationHolder(), formElement, "Collection", entity.getCollection(), EntitySelectionElement.ALL, style);
  91         textAccessionNumber = formFactory.createTextWithLabelElement(formElement, "Accession Number", entity.getAccessionNumber(), style);
  92         textBarcode = formFactory.createTextWithLabelElement(formElement, "Barcode", entity.getBarcode(), style);
  93         checkIsPublish = formFactory.createCheckbox(formElement, "Publish", entity.isPublish(), style);
  94
  95     }
  96
  97     /*
  98      * (non-Javadoc)
  99      *
 100      * @see
 101      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
 102      * .lang.Object)
 103      */
 104     @Override
 105     public void handleEvent(Object eventSource) {
 106         if(eventSource==comboKindOfTissue) {
 107             getEntity().setKindOfUnit(comboKindOfTissue.getSelection());
 108         }
 109         else if(eventSource==comboPreservationMedium) {
 110             addPreservationMethod().setMedium(comboPreservationMedium.getSelection());
 111         }
 112         else if(eventSource==selectionCollection){
 113             getEntity().setCollection(selectionCollection.getSelection());
 114         }
 115         else if(eventSource==textAccessionNumber){
 116             getEntity().setAccessionNumber(textAccessionNumber.getText());
 117         }
 118         else if(eventSource==textBarcode){
 119             getEntity().setBarcode(textBarcode.getText());
 120         }
 121         else if(eventSource==datePreparation){
 122             if(getEntity().getDerivedFrom()!=null){
 123                 getEntity().getDerivedFrom().setTimeperiod(datePreparation.getTimePeriod());
 124             }
 125         }
 126         else if(eventSource==selectionInstitution){
 127             if(getEntity().getDerivedFrom()!=null){
 128                 getEntity().getDerivedFrom().setInstitution(selectionInstitution.getSelection());
 129             }
 130         }
 131         else if(eventSource==selectionStaff){
 132             if(getEntity().getDerivedFrom()!=null){
 133                 getEntity().getDerivedFrom().setActor(selectionStaff.getSelection());
 134             }
 135         }
 136         else if(eventSource==checkIsPublish){
 137             getEntity().setPublish(checkIsPublish.getSelection());
 138         }
 139     }
 140
 141     private PreservationMethod addPreservationMethod(){
 142         PreservationMethod preservationMethod = null;
 143         preservationMethod = getEntity().getPreservation();
 144         if(getEntity().getPreservation()==null){
 145             preservationMethod = PreservationMethod.NewInstance();
 146             getEntity().setPreservation(preservationMethod);
 147         }
 148         return preservationMethod;
 149     }
 150 }