eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/dataimport/SpecimenSearchWizard.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2013 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10 package eu.etaxonomy.taxeditor.view.dataimport;
  11
  12 import java.io.IOException;
  13 import java.io.InputStream;
  14 import java.net.URI;
  15
  16 import org.apache.log4j.Logger;
  17 import org.eclipse.core.runtime.IProgressMonitor;
  18 import org.eclipse.core.runtime.IStatus;
  19 import org.eclipse.core.runtime.Status;
  20 import org.eclipse.core.runtime.jobs.Job;
  21 import org.eclipse.jface.viewers.IStructuredSelection;
  22 import org.eclipse.jface.wizard.Wizard;
  23 import org.eclipse.swt.widgets.Display;
  24 import org.eclipse.ui.IImportWizard;
  25 import org.eclipse.ui.IWorkbench;
  26 import org.eclipse.ui.IWorkbenchPage;
  27 import org.eclipse.ui.IWorkbenchWindow;
  28 import org.eclipse.ui.PartInitException;
  29 import org.eclipse.ui.PlatformUI;
  30 import org.w3c.dom.NodeList;
  31
  32 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  33 import eu.etaxonomy.cdm.ext.common.ServiceWrapperBase;
  34 import eu.etaxonomy.cdm.ext.occurrence.OccurenceQuery;
  35 import eu.etaxonomy.cdm.ext.occurrence.bioCase.BioCaseQueryServiceWrapper;
  36 import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
  37
  38 import eu.etaxonomy.cdm.io.specimen.abcd206.in.AbcdParseUtility;
  39 import eu.etaxonomy.cdm.io.specimen.abcd206.in.SpecimenImportReport;
  40 import eu.etaxonomy.cdm.io.specimen.abcd206.in.UnitAssociationWrapper;
  41 import eu.etaxonomy.taxeditor.store.CdmStore;
  42
  43 /**
  44  * Wizard for querying specimen provider.
  45  * @author pplitzner
  46  * @date 11.09.2013
  47  *
  48  */
  49 public class SpecimenSearchWizard extends Wizard implements IImportWizard {
  50     private static final Logger logger = Logger.getLogger(SpecimenSearchWizard.class);
  51
  52     private OccurenceQuery query = null;
  53     private SpecimenProviderSelectionWizardPage providerSelectionPage;
  54     private SpecimenSearchWizardPage searchPage;
  55
  56     /**
  57      * Creates a new SpecimenSearchWizard
  58      */
  59     public SpecimenSearchWizard() {
  60         //default constructor needed for RCP extension points
  61
  62         //check if connected to a data source. If not this will open an error dialog
  63         CdmStore.getCurrentApplicationConfiguration();
  64         this.setWindowTitle("Search Specimens");
  65     }
  66
  67
  68     /* (non-Javadoc)
  69      * @see org.eclipse.jface.wizard.Wizard#performFinish()
  70      */
  71     @Override
  72     public boolean performFinish() {
  73         searchPage.getController().saveLastSate();
  74         providerSelectionPage.getController().saveLastState();
  75         ServiceWrapperBase serviceWrapper;
  76         DataImportView<?> dataImportView = null;
  77         query = searchPage.getQuery();
  78         Abcd206ImportConfigurator configurator =  CdmStore.getImportManager().AbcdConfigurator();
  79         configurator.setOccurenceQuery(query);
  80         configurator.setSourceUri(providerSelectionPage.getEndPoint());
  81         configurator.setAddMediaAsMediaSpecimen(true);
  82         configurator.setDbSchemaValidation(DbSchemaValidation.CREATE);
  83         configurator.setIgnoreAuthorship(true);
  84
  85         //Job job = CdmStore.getImportManager().createIOServiceJob(configurator, new File(source), SOURCE_TYPE.INPUTSTREAM);
  86         //CdmStore.getImportManager().run(job);
  87         try {
  88             serviceWrapper = providerSelectionPage.getQueryServiceWrapper();
  89             InputStream stream = null;
  90
  91             final IWorkbenchWindow window = PlatformUI.getWorkbench().getActiveWorkbenchWindow();
  92             IWorkbenchPage activePart = window.getActivePage();
  93             if (providerSelectionPage.getQueryType().equals(QueryType.BIOCASE)){
  94                 stream =((BioCaseQueryServiceWrapper) serviceWrapper).query(query, configurator.getSourceUri());
  95                 SpecimenImportReport report = new SpecimenImportReport();
  96                 UnitAssociationWrapper unitNodesList = AbcdParseUtility.parseUnitsNodeList(stream, report);
  97                 NodeList nodeList = unitNodesList.getAssociatedUnits();
  98                 String prefix = unitNodesList.getPrefix();
  99                 String associationType = unitNodesList.getAssociationType();
 100                 URI uri =AbcdParseUtility.parseFirstUri(nodeList, report);
 101                 String content = AbcdParseUtility.parseFirstTextContent(nodeList);
 102                 System.out.println(content);
 103
 104
 105                 SpecimenImportView specimenImportView = new SpecimenImportView();
 106                 try {
 107                     specimenImportView = (SpecimenImportView) activePart.showView(SpecimenImportView.ID);
 108                     specimenImportView.setEndpoint(providerSelectionPage.getEndPoint());
 109                     specimenImportView.setQuery(query);
 110                     dataImportView = specimenImportView;
 111                 } catch (PartInitException e) {
 112                     // TODO Auto-generated catch block
 113                     e.printStackTrace();
 114
 115                 }
 116
 117             } else{
 118                 try {
 119
 120                     dataImportView = (GbifResponseImportView) activePart.showView(GbifResponseImportView.ID, "query_"+query.toString().replaceAll(",", ""), IWorkbenchPage.VIEW_ACTIVATE);
 121                     dataImportView.setQuery(query);
 122                         //      (GbifResponseImportView) activePart.showView(GbifResponseImportView.ID);getWorkbench().getActiveWorkbenchWindow().getActivePage()
 123                          // .showView(GbifResponseImportView.ID, "query_"+query.toString().replaceAll(",", ""),IWorkbenchPage.VIEW_ACTIVATE);
 124
 125                 } catch (PartInitException e) {
 126                     // TODO Auto-generated catch block
 127                     e.printStackTrace();
 128                 }
 129
 130             }
 131
 132
 133         } catch (IOException e) {
 134             // TODO Auto-generated catch block
 135             e.printStackTrace();
 136         }
 137        // CdmStore.getImportManager().run(configurator);
 138
 139 //        try {
 140 //            switch (providerSelectionPage.getQueryType()) {
 141 //            case BIOCASE:
 142 //                SpecimenImportView specimenImportView = (SpecimenImportView) TaxeditorEditorPlugin.getDefault().getWorkbench().getActiveWorkbenchWindow().getActivePage()
 143 //                        .showView(SpecimenImportView.ID, "query_"+query.toString().replaceAll(",", ""),IWorkbenchPage.VIEW_ACTIVATE);
 144 //                specimenImportView.setEndpoint(providerSelectionPage.getEndPoint());
 145 //                dataImportView = specimenImportView;
 146 //                break;
 147 //            case GBIF:
 148 //                dataImportView = (GbifResponseImportView) TaxeditorEditorPlugin.getDefault().getWorkbench().getActiveWorkbenchWindow().getActivePage()
 149 //                .showView(GbifResponseImportView.ID, "query_"+query.toString().replaceAll(",", ""),IWorkbenchPage.VIEW_ACTIVATE);
 150 //                break;
 151 //            }
 152 //        } catch ( PartInitException e ) {
 153 //            logger.error("Could not open import view for query: " + query.toString(), e);
 154 //        }
 155 //        if(dataImportView!=null){
 156 //            dataImportView.setQuery(query);
 157 ////            dataImportView.query();
 158 ////            Display.getDefault().asyncExec(new Runnable() {
 159 ////
 160 ////                @Override
 161 ////                public void run() {
 162 ////                    CdmStore.getContextManager().notifyContextRefresh();
 163 ////                }
 164 ////            });
 165             Job queryJob = new QueryJob("Query specimen provider", dataImportView);
 166             queryJob.schedule();
 167
 168         return true;
 169     }
 170
 171     /* (non-Javadoc)
 172      * @see org.eclipse.jface.wizard.Wizard#addPages()
 173      */
 174     @Override
 175     public void addPages() {
 176         addPage(providerSelectionPage);
 177         addPage(searchPage);
 178     }
 179
 180     /* (non-Javadoc)
 181      * @see org.eclipse.ui.IWorkbenchWizard#init(org.eclipse.ui.IWorkbench, org.eclipse.jface.viewers.IStructuredSelection)
 182      */
 183     @Override
 184     public void init(IWorkbench workbench, IStructuredSelection selection) {
 185         providerSelectionPage = new SpecimenProviderSelectionWizardPage("Select specimen provider");
 186         searchPage = new SpecimenSearchWizardPage("Specimen Search");
 187     }
 188
 189     private class QueryJob extends Job{
 190
 191         private final DataImportView<?> view;
 192
 193         /**
 194          * @param name
 195          */
 196         public QueryJob(String name, DataImportView<?> view) {
 197             super(name);
 198             this.view = view;
 199         }
 200
 201         /* (non-Javadoc)
 202          * @see org.eclipse.core.runtime.jobs.Job#run(org.eclipse.core.runtime.IProgressMonitor)
 203          */
 204         @Override
 205         protected IStatus run(IProgressMonitor monitor) {
 206             view.getConversationHolder().bind();
 207             view.query();
 208             Display.getDefault().asyncExec(new Runnable() {
 209
 210                 @Override
 211                 public void run() {
 212                     CdmStore.getContextManager().notifyContextRefresh();
 213                 }
 214             });
 215             return Status.OK_STATUS;
 216         }
 217
 218     }
 219 }