3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.view
.dataimport
;
12 import java
.io
.IOException
;
13 import java
.io
.InputStream
;
16 import org
.apache
.log4j
.Logger
;
17 import org
.eclipse
.core
.runtime
.IProgressMonitor
;
18 import org
.eclipse
.core
.runtime
.IStatus
;
19 import org
.eclipse
.core
.runtime
.Status
;
20 import org
.eclipse
.core
.runtime
.jobs
.Job
;
21 import org
.eclipse
.jface
.viewers
.IStructuredSelection
;
22 import org
.eclipse
.jface
.wizard
.Wizard
;
23 import org
.eclipse
.swt
.widgets
.Display
;
24 import org
.eclipse
.ui
.IImportWizard
;
25 import org
.eclipse
.ui
.IWorkbench
;
26 import org
.eclipse
.ui
.IWorkbenchPage
;
27 import org
.eclipse
.ui
.IWorkbenchWindow
;
28 import org
.eclipse
.ui
.PartInitException
;
29 import org
.eclipse
.ui
.PlatformUI
;
30 import org
.w3c
.dom
.NodeList
;
32 import eu
.etaxonomy
.cdm
.database
.DbSchemaValidation
;
33 import eu
.etaxonomy
.cdm
.ext
.common
.ServiceWrapperBase
;
34 import eu
.etaxonomy
.cdm
.ext
.occurrence
.OccurenceQuery
;
35 import eu
.etaxonomy
.cdm
.ext
.occurrence
.bioCase
.BioCaseQueryServiceWrapper
;
36 import eu
.etaxonomy
.cdm
.io
.specimen
.abcd206
.in
.Abcd206ImportConfigurator
;
37 import eu
.etaxonomy
.cdm
.io
.specimen
.abcd206
.in
.Abcd206ImportReport
;
38 import eu
.etaxonomy
.cdm
.io
.specimen
.abcd206
.in
.AbcdParseUtility
;
39 import eu
.etaxonomy
.cdm
.io
.specimen
.abcd206
.in
.UnitAssociationWrapper
;
41 import eu
.etaxonomy
.taxeditor
.store
.CdmStore
;
44 * Wizard for querying specimen provider.
49 public class SpecimenSearchWizard
extends Wizard
implements IImportWizard
{
50 private static final Logger logger
= Logger
.getLogger(SpecimenSearchWizard
.class);
52 private OccurenceQuery query
= null;
53 private SpecimenProviderSelectionWizardPage providerSelectionPage
;
54 private SpecimenSearchWizardPage searchPage
;
57 * Creates a new SpecimenSearchWizard
59 public SpecimenSearchWizard() {
60 //default constructor needed for RCP extension points
62 //check if connected to a data source. If not this will open an error dialog
63 CdmStore
.getCurrentApplicationConfiguration();
64 this.setWindowTitle("Search Specimens");
69 * @see org.eclipse.jface.wizard.Wizard#performFinish()
72 public boolean performFinish() {
73 searchPage
.getController().saveLastSate();
74 providerSelectionPage
.getController().saveLastState();
75 ServiceWrapperBase serviceWrapper
;
76 DataImportView
<?
> dataImportView
= null;
77 query
= searchPage
.getQuery();
78 Abcd206ImportConfigurator configurator
= CdmStore
.getImportManager().AbcdConfigurator();
79 configurator
.setOccurenceQuery(query
);
80 configurator
.setSourceUri(providerSelectionPage
.getEndPoint());
81 configurator
.setDbSchemaValidation(DbSchemaValidation
.CREATE
);
82 if(CdmStore
.getCurrentSessionManager().isRemoting() ) {
83 //Job job = CdmStore.getImportManager().createIOServiceJob(configurator, new File(source), SOURCE_TYPE.INPUTSTREAM);
84 //CdmStore.getImportManager().run(job);
86 serviceWrapper
= providerSelectionPage
.getQueryServiceWrapper();
87 InputStream stream
= null;
89 final IWorkbenchWindow window
= PlatformUI
.getWorkbench().getActiveWorkbenchWindow();
90 IWorkbenchPage activePart
= window
.getActivePage();
91 if (providerSelectionPage
.getQueryType().equals(QueryType
.BIOCASE
)){
92 stream
=((BioCaseQueryServiceWrapper
) serviceWrapper
).query(query
, configurator
.getSourceUri());
93 Abcd206ImportReport report
= new Abcd206ImportReport();
94 UnitAssociationWrapper unitNodesList
= AbcdParseUtility
.parseUnitsNodeList(stream
, report
);
95 NodeList nodeList
= unitNodesList
.getAssociatedUnits();
96 String prefix
= unitNodesList
.getPrefix();
97 String associationType
= unitNodesList
.getAssociationType();
98 URI uri
=AbcdParseUtility
.parseFirstUri(nodeList
, report
);
99 String content
= AbcdParseUtility
.parseFirstTextContent(nodeList
);
100 System
.out
.println(content
);
103 SpecimenImportView specimenImportView
= new SpecimenImportView();
105 specimenImportView
= (SpecimenImportView
) activePart
.showView(SpecimenImportView
.ID
);
106 specimenImportView
.setEndpoint(providerSelectionPage
.getEndPoint());
107 specimenImportView
.setQuery(query
);
108 dataImportView
= specimenImportView
;
109 } catch (PartInitException e
) {
110 // TODO Auto-generated catch block
118 dataImportView
= (GbifResponseImportView
) activePart
.showView(GbifResponseImportView
.ID
, "query_"+query
.toString().replaceAll(",", ""), IWorkbenchPage
.VIEW_ACTIVATE
);
120 // (GbifResponseImportView) activePart.showView(GbifResponseImportView.ID);getWorkbench().getActiveWorkbenchWindow().getActivePage()
121 // .showView(GbifResponseImportView.ID, "query_"+query.toString().replaceAll(",", ""),IWorkbenchPage.VIEW_ACTIVATE);
123 } catch (PartInitException e
) {
124 // TODO Auto-generated catch block
131 } catch (IOException e
) {
132 // TODO Auto-generated catch block
135 // CdmStore.getImportManager().run(configurator);
138 // switch (providerSelectionPage.getQueryType()) {
140 // SpecimenImportView specimenImportView = (SpecimenImportView) TaxeditorEditorPlugin.getDefault().getWorkbench().getActiveWorkbenchWindow().getActivePage()
141 // .showView(SpecimenImportView.ID, "query_"+query.toString().replaceAll(",", ""),IWorkbenchPage.VIEW_ACTIVATE);
142 // specimenImportView.setEndpoint(providerSelectionPage.getEndPoint());
143 // dataImportView = specimenImportView;
146 // dataImportView = (GbifResponseImportView) TaxeditorEditorPlugin.getDefault().getWorkbench().getActiveWorkbenchWindow().getActivePage()
147 // .showView(GbifResponseImportView.ID, "query_"+query.toString().replaceAll(",", ""),IWorkbenchPage.VIEW_ACTIVATE);
150 // } catch ( PartInitException e ) {
151 // logger.error("Could not open import view for query: " + query.toString(), e);
153 // if(dataImportView!=null){
154 // dataImportView.setQuery(query);
155 //// dataImportView.query();
156 //// Display.getDefault().asyncExec(new Runnable() {
159 //// public void run() {
160 //// CdmStore.getContextManager().notifyContextRefresh();
163 Job queryJob
= new QueryJob("Query specimen provider", dataImportView
);
170 * @see org.eclipse.jface.wizard.Wizard#addPages()
173 public void addPages() {
174 addPage(providerSelectionPage
);
179 * @see org.eclipse.ui.IWorkbenchWizard#init(org.eclipse.ui.IWorkbench, org.eclipse.jface.viewers.IStructuredSelection)
182 public void init(IWorkbench workbench
, IStructuredSelection selection
) {
183 providerSelectionPage
= new SpecimenProviderSelectionWizardPage("Select specimen provider");
184 searchPage
= new SpecimenSearchWizardPage("Specimen Search");
187 private class QueryJob
extends Job
{
189 private final DataImportView
<?
> view
;
194 public QueryJob(String name
, DataImportView
<?
> view
) {
200 * @see org.eclipse.core.runtime.jobs.Job#run(org.eclipse.core.runtime.IProgressMonitor)
203 protected IStatus
run(IProgressMonitor monitor
) {
204 view
.getConversationHolder().bind();
206 Display
.getDefault().asyncExec(new Runnable() {
210 CdmStore
.getContextManager().notifyContextRefresh();
213 return Status
.OK_STATUS
;