eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/TissueSampleGeneralDetailElement.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2013 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10 package eu.etaxonomy.taxeditor.ui.section.occurrence.dna;
  11
  12 import org.apache.log4j.Logger;
  13
  14 import eu.etaxonomy.cdm.model.agent.AgentBase;
  15 import eu.etaxonomy.cdm.model.common.DefinedTerm;
  16 import eu.etaxonomy.cdm.model.common.TermType;
  17 import eu.etaxonomy.cdm.model.common.TimePeriod;
  18 import eu.etaxonomy.cdm.model.molecular.DnaSample;
  19 import eu.etaxonomy.cdm.model.occurrence.Collection;
  20 import eu.etaxonomy.cdm.model.occurrence.PreservationMethod;
  21 import eu.etaxonomy.taxeditor.ui.combo.TermComboElement;
  22 import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory;
  23 import eu.etaxonomy.taxeditor.ui.element.ICdmFormElement;
  24 import eu.etaxonomy.taxeditor.ui.element.TextWithLabelElement;
  25 import eu.etaxonomy.taxeditor.ui.element.TimePeriodElement;
  26 import eu.etaxonomy.taxeditor.ui.section.AbstractCdmDetailElement;
  27 import eu.etaxonomy.taxeditor.ui.selection.EntitySelectionElement;
  28
  29 /**
  30  * @author pplitzner
  31  * @date 16.12.2013
  32  *
  33  */
  34 public class TissueSampleGeneralDetailElement extends AbstractCdmDetailElement<DnaSample> {
  35
  36     static private final Logger logger = Logger.getLogger(TissueSampleGeneralDetailElement.class);
  37
  38     private TermComboElement<DefinedTerm> comboKindOfTissue;
  39     private EntitySelectionElement<AgentBase> selectionInstitution;
  40     private EntitySelectionElement<AgentBase> selectionStaff;
  41     private TimePeriodElement datePreparation;
  42     private TermComboElement<DefinedTerm> comboPreservationMedium;
  43     private EntitySelectionElement<Collection> selectionCollection;
  44     private TextWithLabelElement textAccessionNumber;
  45     private TextWithLabelElement textBarcode;
  46
  47
  48     /**
  49      * @param formFactory
  50      * @param formElement
  51      */
  52     public TissueSampleGeneralDetailElement(CdmFormFactory formFactory, ICdmFormElement formElement) {
  53         super(formFactory, formElement);
  54     }
  55
  56     /*
  57      * (non-Javadoc)
  58      *
  59      * @see
  60      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
  61      * (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
  62      */
  63     @Override
  64     protected void createControls(ICdmFormElement formElement, DnaSample entity, int style) {
  65         //TODO handle all parameters here and in handleEvent()
  66         comboKindOfTissue = formFactory.createDefinedTermComboElement(TermType.KindOfUnit, formElement, "Kind Of Tissue", entity.getKindOfUnit(), style);
  67         //TODO: institute
  68         TimePeriod preparationDate = null;
  69         DefinedTerm preservationMedium = null;
  70         AgentBase<?> staff = null;
  71         if(entity.getDerivedFrom()!=null){
  72             staff = entity.getDerivedFrom().getActor();
  73             preparationDate = entity.getDerivedFrom().getTimeperiod();
  74         }
  75         if(entity.getPreservation()!=null){
  76             preservationMedium = entity.getPreservation().getMedium();
  77         }
  78         selectionStaff = formFactory.createSelectionElement(AgentBase.class, getConversationHolder(), formElement, "Staff", staff, EntitySelectionElement.ALL,style);
  79         datePreparation = formFactory.createTimePeriodElement(formElement, "Preparation date", preparationDate, style);
  80         comboPreservationMedium = formFactory.createDefinedTermComboElement(TermType.MaterialOrMethod, formElement, "Preservation medium", preservationMedium, style);
  81         selectionCollection = formFactory.createSelectionElement(Collection.class, getConversationHolder(), formElement, "Collection", entity.getCollection(), EntitySelectionElement.ALL, style);
  82         textAccessionNumber = formFactory.createTextWithLabelElement(formElement, "Accession Number", entity.getAccessionNumber(), style);
  83         textBarcode = formFactory.createTextWithLabelElement(formElement, "Barcode", entity.getBarcode(), style);
  84
  85     }
  86
  87     /*
  88      * (non-Javadoc)
  89      *
  90      * @see
  91      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
  92      * .lang.Object)
  93      */
  94     @Override
  95     public void handleEvent(Object eventSource) {
  96         //TODO: institute
  97         if(eventSource==comboKindOfTissue) {
  98             getEntity().setKindOfUnit(comboKindOfTissue.getSelection());
  99         }
 100         else if(eventSource==comboPreservationMedium) {
 101             addPreservationMethod().setMedium(comboPreservationMedium.getSelection());
 102         }
 103         else if(eventSource==selectionCollection){
 104             getEntity().setCollection(selectionCollection.getSelection());
 105         }
 106         else if(eventSource==textAccessionNumber){
 107             getEntity().setAccessionNumber(textAccessionNumber.getText());
 108         }
 109         else if(eventSource==textBarcode){
 110             getEntity().setBarcode(textBarcode.getText());
 111         }
 112         else if(eventSource==datePreparation){
 113             if(getEntity().getDerivedFrom()!=null){
 114                 getEntity().getDerivedFrom().setTimeperiod(datePreparation.getTimePeriod());
 115             }
 116         }
 117         else if(eventSource==selectionStaff){
 118             if(getEntity().getDerivedFrom()!=null){
 119                 getEntity().getDerivedFrom().setActor(selectionStaff.getSelection());
 120             }
 121         }
 122     }
 123
 124     private PreservationMethod addPreservationMethod(){
 125         PreservationMethod preservationMethod = null;
 126         preservationMethod = getEntity().getPreservation();
 127         if(getEntity().getPreservation()==null){
 128             preservationMethod = PreservationMethod.NewInstance();
 129             getEntity().setPreservation(preservationMethod);
 130         }
 131         return preservationMethod;
 132     }
 133 }