3 * Copyright (C) 2014 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.dna
;
12 import eu
.etaxonomy
.cdm
.model
.common
.DefinedTerm
;
13 import eu
.etaxonomy
.cdm
.model
.molecular
.Primer
;
14 import eu
.etaxonomy
.cdm
.model
.molecular
.SequenceString
;
15 import eu
.etaxonomy
.cdm
.model
.reference
.Reference
;
16 import eu
.etaxonomy
.taxeditor
.ui
.combo
.TermComboElement
;
17 import eu
.etaxonomy
.taxeditor
.ui
.element
.CdmFormFactory
;
18 import eu
.etaxonomy
.taxeditor
.ui
.element
.ICdmFormElement
;
19 import eu
.etaxonomy
.taxeditor
.ui
.element
.LayoutConstants
;
20 import eu
.etaxonomy
.taxeditor
.ui
.element
.TextWithLabelElement
;
21 import eu
.etaxonomy
.taxeditor
.ui
.section
.AbstractCdmDetailElement
;
22 import eu
.etaxonomy
.taxeditor
.ui
.section
.supplemental
.AnnotationSection
;
23 import eu
.etaxonomy
.taxeditor
.ui
.selection
.EntitySelectionElement
;
30 public class PrimerGeneralDetailElement
extends AbstractCdmDetailElement
<Primer
> {
33 private TextWithLabelElement textPrimerName
;
34 // we are using a basic text field which is backed up by a Sequence object modelwise.
35 // This is a bit of a overhead as we may just need the sequence string. This may change in future in both directions:
36 // either extending this view to support the remaining fields of Sequence or by switching to the more basic SequenceString model element
37 private TextWithLabelElement textPrimerSequence
;
38 private TermComboElement
<DefinedTerm
> comboMarker
;
39 private EntitySelectionElement
<Reference
> selectionReference
;
45 public PrimerGeneralDetailElement(CdmFormFactory formFactory
, ICdmFormElement formElement
) {
46 super(formFactory
, formElement
);
53 * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
54 * (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
57 protected void createControls(ICdmFormElement formElement
, Primer entity
, int style
) {
58 textPrimerName
= formFactory
.createTextWithLabelElement(formElement
, "Primer Name", entity
.getLabel(), style
);
59 String sequenceString
= "";
60 if(entity
.getSequence()!=null){
61 sequenceString
= entity
.getSequence().getString();
63 textPrimerSequence
= formFactory
.createTextWithLabelElement(formElement
, "Primer seq. 5'->3'", sequenceString
, style
);
66 // comboMarker = formFactory.createDefinedTermComboElement(TermType.DnaMarker, formElement, "DNA Marker", entity.getDnaMarker(), style);
68 selectionReference
= formFactory
69 .createSelectionElement(Reference
.class,
70 getConversationHolder(), formElement
, "Reference",
71 entity
.getPublishedIn(),
72 EntitySelectionElement
.ALL
, style
);
74 AnnotationSection annotationSection
= formFactory
.createAnnotationSection(getConversationHolder(), formElement
, style
);
75 annotationSection
.setLayoutData(LayoutConstants
.FILL_HORIZONTALLY(2, 1));
76 annotationSection
.setEntity(entity
);
83 * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
87 public void handleEvent(Object eventSource
) {
88 if(eventSource
==textPrimerName
){
89 getEntity().setLabel(textPrimerName
.getText());
91 else if(eventSource
==comboMarker
){
93 // getEntity().setDnaMarker(comboMarker.getSelection());
95 else if(eventSource
==textPrimerSequence
){
96 SequenceString sequenceString
= getEntity().getSequence();
97 if(sequenceString
==null){
98 sequenceString
= SequenceString
.NewInstance("");
99 getEntity().setSequence(sequenceString
);
101 sequenceString
.setString(textPrimerSequence
.getText());
103 else if(eventSource
==selectionReference
){
104 getEntity().setPublishedIn(selectionReference
.getSelection());