eu.etaxonomy.taxeditor.molecular.lib/pom.xml

   1 <project>
   2   <modelVersion>4.0.0</modelVersion>
   3   <groupId>eu.etaxonomy.taxeditor</groupId>
   4   <artifactId>eu.etaxonomy.taxeditor.molecular.lib</artifactId>
   5   <packaging>eclipse-plugin</packaging>
   6
   7   <parent>
   8     <groupId>eu.etaxonomy</groupId>
   9     <artifactId>taxeditor-parent</artifactId>
  10     <version>4.2.0-SNAPSHOT</version>
  11   </parent>
  12
  13   <build>
  14     <plugins>
  15       <plugin>
  16         <groupId>org.apache.maven.plugins</groupId>
  17         <artifactId>maven-dependency-plugin</artifactId>
  18         <version>2.4</version>
  19         <executions>
  20           <execution>
  21             <id>copy-dependencies</id>
  22             <phase>validate</phase>
  23             <goals>
  24               <goal>copy-dependencies</goal>
  25             </goals>
  26             <configuration>
  27               <includeArtifactIds>libralign-swt, libralign-core,
  28                 bioinfweb-commons-swt, bioinfweb-commons-core,
  29                 bioinfweb-commons-bio, bioinfweb-commons-swing,
  30                 tic-core, libralign-biojava1, core, sequencing,
  31                 tic-swt, jphyloio-core, owlapi-xmlutils</includeArtifactIds>
  32               <outputDirectory>lib</outputDirectory>
  33               <overWriteReleases>true</overWriteReleases>
  34               <overWriteSnapshots>true</overWriteSnapshots>
  35               <excludeTransitive>true</excludeTransitive>
  36             </configuration>
  37           </execution>
  38           <!-- <execution> -->
  39           <!-- <id>copy-dependencies-sources</id> -->
  40           <!-- <phase>validate</phase> -->
  41           <!-- <goals> -->
  42           <!-- <goal>copy-dependencies</goal> -->
  43           <!-- </goals> -->
  44           <!-- <configuration> -->
  45           <!-- <classifier>sources</classifier> -->
  46           <!-- <includeArtifactIds>cdmlib-commons,cdmlib-model,cdmlib-persistence,cdmlib-remote,cdmlib-print,cdmlib-services,cdmlib-ext,cdmlib-io</includeArtifactIds> -->
  47           <!-- <outputDirectory>lib</outputDirectory> -->
  48           <!-- <overWriteReleases>true</overWriteReleases> -->
  49           <!-- <overWriteSnapshots>true</overWriteSnapshots> -->
  50           <!-- <excludeTransitive>true</excludeTransitive> -->
  51           <!-- <failOnMissingClassifierArtifact>false</failOnMissingClassifierArtifact> -->
  52           <!-- </configuration> -->
  53           <!-- </execution> -->
  54         </executions>
  55       </plugin>
  56       <plugin>
  57         <groupId>org.apache.maven.plugins</groupId>
  58         <artifactId>maven-antrun-plugin</artifactId>
  59         <version>1.7</version>
  60         <executions>
  61           <execution>
  62             <id>remove-existing-jars</id>
  63             <phase>clean</phase>
  64             <goals>
  65               <goal>run</goal>
  66             </goals>
  67             <configuration>
  68               <target>
  69                 <echo>Remove all jars</echo>
  70                 <delete>
  71                   <fileset dir="./lib" includes="*" />
  72                 </delete>
  73               </target>
  74             </configuration>
  75           </execution>
  76           <execution>
  77             <id>update-snapshot-jar-names</id>
  78             <phase>validate</phase>
  79             <goals>
  80               <goal>run</goal>
  81             </goals>
  82             <configuration>
  83               <target>
  84                 <echo>Update jars to SNAPSHOT when build with
  85                   timestamp</echo>
  86                 <move todir="./lib">
  87                   <fileset dir="./lib" />
  88                   <mapper type="regexp" from="(^bioinfweb\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
  89                 </move>
  90                 <move todir="./lib">
  91                   <fileset dir="./lib" />
  92                   <mapper type="regexp" from="(^libralign\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
  93                 </move>
  94                 <move todir="./lib">
  95                   <fileset dir="./lib" />
  96                   <mapper type="regexp" from="(^tic\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
  97                 </move>
  98                 <move todir="./lib">
  99                   <fileset dir="./lib" />
 100                   <mapper type="regexp" from="(^jphyloio\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
 101                 </move>
 102                 <move todir="./lib">
 103                   <fileset dir="./lib" />
 104                   <mapper type="regexp" from="(^owlapi\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
 105                 </move>
 106                 <move todir="./lib">
 107                   <fileset dir="./lib" />
 108                   <mapper type="regexp" from="commons-collections4-4.1.jar" to="commons-collections4-4.1.jar" />
 109                 </move>
 110                 <move todir="./lib">
 111                   <fileset dir="./lib" />
 112                   <mapper type="regexp" from="(^core\-[0-9]\.[0-9]\.[0-9])(\.jar)" to="\1-SNAPSHOT\2" />
 113                 </move>
 114                 <move todir="./lib">
 115                   <fileset dir="./lib" />
 116                   <mapper type="regexp" from="(^sequencing\-[0-9]\.[0-9]\.[0-9])(\.jar)" to="\1-SNAPSHOT\2" />
 117                 </move>
 118               </target>
 119             </configuration>
 120           </execution>
 121         </executions>
 122       </plugin>
 123     </plugins>
 124   </build>
 125
 126   <dependencies>
 127     <!-- JPhyloIO -->
 128     <dependency>
 129       <groupId>info.bioinfweb.jphyloio</groupId>
 130       <artifactId>jphyloio-core</artifactId>
 131       <version>0-SNAPSHOT</version>
 132     </dependency>
 133     <dependency>
 134       <groupId>info.bioinfweb.thirdparty.owlapi</groupId>
 135       <artifactId>owlapi-xmlutils</artifactId>
 136       <version>4.1.4</version>
 137     </dependency>
 138     <dependency>
 139       <groupId>org.apache.commons</groupId>
 140       <artifactId>commons-collections4</artifactId>
 141       <version>4.1</version>
 142     </dependency>
 143     <!-- LibrAlign -->
 144     <dependency>
 145       <groupId>info.bioinfweb.libralign</groupId>
 146       <artifactId>libralign-core</artifactId>
 147       <version>0-SNAPSHOT</version>
 148     </dependency>
 149     <dependency>
 150       <groupId>info.bioinfweb.libralign</groupId>
 151       <artifactId>libralign-swt</artifactId>
 152       <version>0-SNAPSHOT</version>
 153     </dependency>
 154     <dependency>
 155       <groupId>info.bioinfweb.libralign</groupId>
 156       <artifactId>libralign-biojava1</artifactId>
 157       <version>0-SNAPSHOT</version>
 158     </dependency>
 159     <!-- bioinfweb.commons -->
 160     <dependency>
 161       <groupId>info.bioinfweb.commons.java</groupId>
 162       <artifactId>bioinfweb-commons-swt</artifactId>
 163       <version>2-SNAPSHOT</version>
 164     </dependency>
 165     <dependency>
 166       <groupId>info.bioinfweb.commons.java</groupId>
 167       <artifactId>bioinfweb-commons-core</artifactId>
 168       <version>2-SNAPSHOT</version>
 169     </dependency>
 170     <dependency>
 171       <groupId>info.bioinfweb.commons.java</groupId>
 172       <artifactId>bioinfweb-commons-bio</artifactId>
 173       <version>2-SNAPSHOT</version>
 174     </dependency>
 175     <dependency>
 176       <groupId>info.bioinfweb.commons.java</groupId>
 177       <artifactId>bioinfweb-commons-swing</artifactId>
 178       <version>2-SNAPSHOT</version>
 179     </dependency>
 180     <!-- TIC -->
 181     <dependency>
 182       <groupId>info.bioinfweb.tic</groupId>
 183       <artifactId>tic-core</artifactId>
 184       <version>2-SNAPSHOT</version>
 185     </dependency>
 186     <dependency>
 187       <groupId>info.bioinfweb.tic</groupId>
 188       <artifactId>tic-swt</artifactId>
 189       <version>2-SNAPSHOT</version>
 190     </dependency>
 191         <!-- JPhyloIO -->
 192     <dependency>
 193       <groupId>info.bioinfweb.jphyloio</groupId>
 194       <artifactId>jphyloio-core</artifactId>
 195       <version>0-SNAPSHOT</version>
 196     </dependency>
 197     <dependency>
 198       <groupId>info.bioinfweb.thirdparty.owlapi</groupId>
 199       <artifactId>owlapi-xmlutils</artifactId>
 200       <version>4.1.4</version>
 201     </dependency>
 202     <dependency>
 203       <groupId>org.apache.commons</groupId>
 204       <artifactId>commons-collections4</artifactId>
 205       <version>4.1</version>
 206     </dependency>
 207     <!-- LibrAlign -->
 208     <dependency>
 209       <groupId>info.bioinfweb.libralign</groupId>
 210       <artifactId>libralign-core</artifactId>
 211       <version>0-SNAPSHOT</version>
 212     </dependency>
 213     <dependency>
 214       <groupId>info.bioinfweb.libralign</groupId>
 215       <artifactId>libralign-swt</artifactId>
 216       <version>0-SNAPSHOT</version>
 217     </dependency>
 218     <dependency>
 219       <groupId>info.bioinfweb.libralign</groupId>
 220       <artifactId>libralign-biojava1</artifactId>
 221       <version>0-SNAPSHOT</version>
 222     </dependency>
 223     <!-- bioinfweb.commons -->
 224     <dependency>
 225       <groupId>info.bioinfweb.commons.java</groupId>
 226       <artifactId>bioinfweb-commons-swt</artifactId>
 227       <version>2-SNAPSHOT</version>
 228     </dependency>
 229     <dependency>
 230       <groupId>info.bioinfweb.commons.java</groupId>
 231       <artifactId>bioinfweb-commons-core</artifactId>
 232       <version>2-SNAPSHOT</version>
 233     </dependency>
 234     <dependency>
 235       <groupId>info.bioinfweb.commons.java</groupId>
 236       <artifactId>bioinfweb-commons-bio</artifactId>
 237       <version>2-SNAPSHOT</version>
 238     </dependency>
 239     <dependency>
 240       <groupId>info.bioinfweb.commons.java</groupId>
 241       <artifactId>bioinfweb-commons-swing</artifactId>
 242       <version>2-SNAPSHOT</version>
 243     </dependency>
 244     <!-- TIC -->
 245     <dependency>
 246       <groupId>info.bioinfweb.tic</groupId>
 247       <artifactId>tic-core</artifactId>
 248       <version>2-SNAPSHOT</version>
 249     </dependency>
 250     <dependency>
 251       <groupId>info.bioinfweb.tic</groupId>
 252       <artifactId>tic-swt</artifactId>
 253       <version>2-SNAPSHOT</version>
 254     </dependency>    <!-- JPhyloIO -->
 255     <dependency>
 256       <groupId>info.bioinfweb.jphyloio</groupId>
 257       <artifactId>jphyloio-core</artifactId>
 258       <version>0-SNAPSHOT</version>
 259     </dependency>
 260     <dependency>
 261       <groupId>info.bioinfweb.thirdparty.owlapi</groupId>
 262       <artifactId>owlapi-xmlutils</artifactId>
 263       <version>4.1.4</version>
 264     </dependency>
 265     <dependency>
 266       <groupId>org.apache.commons</groupId>
 267       <artifactId>commons-collections4</artifactId>
 268       <version>4.1</version>
 269     </dependency>
 270     <!-- LibrAlign -->
 271     <dependency>
 272       <groupId>info.bioinfweb.libralign</groupId>
 273       <artifactId>libralign-core</artifactId>
 274       <version>0-SNAPSHOT</version>
 275     </dependency>
 276     <dependency>
 277       <groupId>info.bioinfweb.libralign</groupId>
 278       <artifactId>libralign-swt</artifactId>
 279       <version>0-SNAPSHOT</version>
 280     </dependency>
 281     <dependency>
 282       <groupId>info.bioinfweb.libralign</groupId>
 283       <artifactId>libralign-biojava1</artifactId>
 284       <version>0-SNAPSHOT</version>
 285     </dependency>
 286     <!-- bioinfweb.commons -->
 287     <dependency>
 288       <groupId>info.bioinfweb.commons.java</groupId>
 289       <artifactId>bioinfweb-commons-swt</artifactId>
 290       <version>2-SNAPSHOT</version>
 291     </dependency>
 292     <dependency>
 293       <groupId>info.bioinfweb.commons.java</groupId>
 294       <artifactId>bioinfweb-commons-core</artifactId>
 295       <version>2-SNAPSHOT</version>
 296     </dependency>
 297     <dependency>
 298       <groupId>info.bioinfweb.commons.java</groupId>
 299       <artifactId>bioinfweb-commons-bio</artifactId>
 300       <version>2-SNAPSHOT</version>
 301     </dependency>
 302     <dependency>
 303       <groupId>info.bioinfweb.commons.java</groupId>
 304       <artifactId>bioinfweb-commons-swing</artifactId>
 305       <version>2-SNAPSHOT</version>
 306     </dependency>
 307     <!-- TIC -->
 308     <dependency>
 309       <groupId>info.bioinfweb.tic</groupId>
 310       <artifactId>tic-core</artifactId>
 311       <version>2-SNAPSHOT</version>
 312     </dependency>
 313     <dependency>
 314       <groupId>info.bioinfweb.tic</groupId>
 315       <artifactId>tic-swt</artifactId>
 316       <version>2-SNAPSHOT</version>
 317     </dependency>
 318     <!-- BioJava -->
 319     <dependency>
 320       <groupId>org.biojava</groupId>
 321       <artifactId>core</artifactId>
 322       <version>1.9.2</version>
 323     </dependency>
 324     <dependency>
 325       <groupId>org.biojava</groupId>
 326       <artifactId>sequencing</artifactId>
 327       <version>1.9.2</version>
 328     </dependency>
 329   </dependencies>
 330
 331   <repositories>
 332     <repository>
 333       <id>bioinfweb-maven-repo</id>
 334       <name>bioinfweb repository</name>
 335       <url>http://bioinfweb.info/MavenRepository/</url>
 336     </repository>
 337     <!-- <repository>
 338       <id>central-maven-repo</id>
 339       <name>Maven Central</name>
 340       <url>http://central.maven.org/maven2/</url>
 341     </repository> -->
 342   </repositories>
 343 </project>
 344