3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.editor
.view
.dataimport
.transientServices
;
12 import java
.io
.IOException
;
13 import java
.util
.Collection
;
14 import java
.util
.EnumSet
;
15 import java
.util
.List
;
18 import java
.util
.UUID
;
20 import org
.apache
.lucene
.index
.CorruptIndexException
;
21 import org
.apache
.lucene
.queryParser
.ParseException
;
22 import org
.hibernate
.LockOptions
;
23 import org
.hibernate
.Session
;
24 import org
.hibernate
.criterion
.Criterion
;
25 import org
.hibernate
.envers
.query
.criteria
.AuditCriterion
;
27 import eu
.etaxonomy
.cdm
.api
.service
.DeleteResult
;
28 import eu
.etaxonomy
.cdm
.api
.service
.ITaxonService
;
29 import eu
.etaxonomy
.cdm
.api
.service
.TaxaAndNamesSearchMode
;
30 import eu
.etaxonomy
.cdm
.api
.service
.config
.DeleteConfiguratorBase
;
31 import eu
.etaxonomy
.cdm
.api
.service
.config
.IFindTaxaAndNamesConfigurator
;
32 import eu
.etaxonomy
.cdm
.api
.service
.config
.IIdentifiableEntityServiceConfigurator
;
33 import eu
.etaxonomy
.cdm
.api
.service
.config
.IncludedTaxonConfiguration
;
34 import eu
.etaxonomy
.cdm
.api
.service
.config
.MatchingTaxonConfigurator
;
35 import eu
.etaxonomy
.cdm
.api
.service
.config
.SynonymDeletionConfigurator
;
36 import eu
.etaxonomy
.cdm
.api
.service
.config
.TaxonDeletionConfigurator
;
37 import eu
.etaxonomy
.cdm
.api
.service
.dto
.IncludedTaxaDTO
;
38 import eu
.etaxonomy
.cdm
.api
.service
.exception
.DataChangeNoRollbackException
;
39 import eu
.etaxonomy
.cdm
.api
.service
.exception
.HomotypicalGroupChangeException
;
40 import eu
.etaxonomy
.cdm
.api
.service
.pager
.Pager
;
41 import eu
.etaxonomy
.cdm
.api
.service
.search
.LuceneMultiSearchException
;
42 import eu
.etaxonomy
.cdm
.api
.service
.search
.SearchResult
;
43 import eu
.etaxonomy
.cdm
.api
.service
.util
.TaxonRelationshipEdge
;
44 import eu
.etaxonomy
.cdm
.common
.monitor
.IProgressMonitor
;
45 import eu
.etaxonomy
.cdm
.model
.common
.Annotation
;
46 import eu
.etaxonomy
.cdm
.model
.common
.ISourceable
;
47 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableEntity
;
48 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableSource
;
49 import eu
.etaxonomy
.cdm
.model
.common
.LSID
;
50 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
51 import eu
.etaxonomy
.cdm
.model
.common
.Marker
;
52 import eu
.etaxonomy
.cdm
.model
.common
.MarkerType
;
53 import eu
.etaxonomy
.cdm
.model
.common
.OrderedTermVocabulary
;
54 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
;
55 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
.Direction
;
56 import eu
.etaxonomy
.cdm
.model
.common
.UuidAndTitleCache
;
57 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionElementBase
;
58 import eu
.etaxonomy
.cdm
.model
.description
.Feature
;
59 import eu
.etaxonomy
.cdm
.model
.description
.PresenceAbsenceTermBase
;
60 import eu
.etaxonomy
.cdm
.model
.location
.NamedArea
;
61 import eu
.etaxonomy
.cdm
.model
.media
.Media
;
62 import eu
.etaxonomy
.cdm
.model
.media
.MediaRepresentation
;
63 import eu
.etaxonomy
.cdm
.model
.media
.Rights
;
64 import eu
.etaxonomy
.cdm
.model
.name
.HomotypicalGroup
;
65 import eu
.etaxonomy
.cdm
.model
.name
.Rank
;
66 import eu
.etaxonomy
.cdm
.model
.name
.TaxonNameBase
;
67 import eu
.etaxonomy
.cdm
.model
.reference
.Reference
;
68 import eu
.etaxonomy
.cdm
.model
.taxon
.Classification
;
69 import eu
.etaxonomy
.cdm
.model
.taxon
.Synonym
;
70 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationship
;
71 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationshipType
;
72 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
73 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonBase
;
74 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationship
;
75 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationshipType
;
76 import eu
.etaxonomy
.cdm
.model
.view
.AuditEvent
;
77 import eu
.etaxonomy
.cdm
.model
.view
.AuditEventRecord
;
78 import eu
.etaxonomy
.cdm
.persistence
.dao
.common
.AuditEventSort
;
79 import eu
.etaxonomy
.cdm
.persistence
.fetch
.CdmFetch
;
80 import eu
.etaxonomy
.cdm
.persistence
.query
.Grouping
;
81 import eu
.etaxonomy
.cdm
.persistence
.query
.MatchMode
;
82 import eu
.etaxonomy
.cdm
.persistence
.query
.OrderHint
;
83 import eu
.etaxonomy
.cdm
.strategy
.cache
.common
.IIdentifiableEntityCacheStrategy
;
84 import eu
.etaxonomy
.cdm
.strategy
.match
.IMatchStrategy
;
85 import eu
.etaxonomy
.cdm
.strategy
.merge
.IMergeStrategy
;
86 import eu
.etaxonomy
.taxeditor
.ui
.section
.supplemental
.IdentifiableSourceElement
;
93 public class TransientTaxonService
implements ITaxonService
{
95 private final ITaxonService defaultTaxonService
;
98 * @param defaultTaxonService
100 public TransientTaxonService(ITaxonService defaultTaxonService
) {
101 this.defaultTaxonService
= defaultTaxonService
;
109 * @param propertyPaths
111 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
114 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(TaxonBase t
, Integer pageSize
, Integer pageNumber
, AuditEventSort sort
, List
<String
> propertyPaths
) {
115 return defaultTaxonService
.pageAuditEvents(t
, pageSize
, pageNumber
, sort
, propertyPaths
);
119 * @param annotatedObj
124 * @param propertyPaths
126 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
129 public Pager
<Annotation
> getAnnotations(TaxonBase annotatedObj
, MarkerType status
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
130 return defaultTaxonService
.getAnnotations(annotatedObj
, status
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
135 * @see eu.etaxonomy.cdm.api.service.IService#clear()
138 public void clear() {
139 defaultTaxonService
.clear();
145 * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
148 public void lock(TaxonBase t
, LockOptions lockOptions
) {
149 defaultTaxonService
.lock(t
, lockOptions
);
155 * @param propertyPaths
156 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
159 public void refresh(TaxonBase t
, LockOptions lockOptions
, List
<String
> propertyPaths
) {
160 defaultTaxonService
.refresh(t
, lockOptions
, propertyPaths
);
165 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
168 public void updateTitleCache() {
169 defaultTaxonService
.updateTitleCache();
175 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
178 public AuditEventRecord
<TaxonBase
> getNextAuditEvent(TaxonBase t
) {
179 return defaultTaxonService
.getNextAuditEvent(t
);
183 * @param annotatableEntity
188 * @param propertyPaths
190 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
193 public Pager
<Marker
> getMarkers(TaxonBase annotatableEntity
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
194 return defaultTaxonService
.getMarkers(annotatableEntity
, technical
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
200 * @param cacheStrategy
202 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
205 public void updateTitleCache(Class
<?
extends TaxonBase
> clazz
, Integer stepSize
, IIdentifiableEntityCacheStrategy
<TaxonBase
> cacheStrategy
, IProgressMonitor monitor
) {
206 defaultTaxonService
.updateTitleCache(clazz
, stepSize
, cacheStrategy
, monitor
);
212 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
215 public AuditEventRecord
<TaxonBase
> getPreviousAuditEvent(TaxonBase t
) {
216 return defaultTaxonService
.getPreviousAuditEvent(t
);
222 * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
225 public int count(Class
<?
extends TaxonBase
> clazz
) {
226 return defaultTaxonService
.count(clazz
);
237 * @param propertyPaths
239 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
242 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(Class
<?
extends TaxonBase
> clazz
, AuditEvent from
, AuditEvent to
, List
<AuditCriterion
> criteria
, Integer pageSize
, Integer pageValue
, AuditEventSort sort
, List
<String
> propertyPaths
) {
243 return defaultTaxonService
.pageAuditEvents(clazz
, from
, to
, criteria
, pageSize
, pageValue
, sort
, propertyPaths
);
249 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
252 public TaxonBase
find(LSID lsid
) {
253 return defaultTaxonService
.find(lsid
);
257 * @param persistentObject
259 * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
262 public DeleteResult
delete(TaxonBase persistentObject
) {
263 return defaultTaxonService
.delete(persistentObject
);
271 * @param propertyPaths
273 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
276 public List
<Object
[]> groupMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
277 return defaultTaxonService
.groupMarkers(clazz
, technical
, pageSize
, pageNumber
, propertyPaths
);
283 * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
286 public boolean exists(UUID uuid
) {
287 return defaultTaxonService
.exists(uuid
);
295 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
298 public TaxonBase
replace(TaxonBase x
, TaxonBase y
) {
299 return defaultTaxonService
.replace(x
, y
);
305 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
308 public List
<TaxonBase
> find(Set
<UUID
> uuidSet
) {
309 return defaultTaxonService
.find(uuidSet
);
316 * @param propertyPaths
318 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
321 public Pager
<IdentifiableSource
> getSources(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
322 return defaultTaxonService
.getSources(t
, pageSize
, pageNumber
, propertyPaths
);
328 * @param onlyWithChildren
331 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.reference.Reference, eu.etaxonomy.cdm.persistence.fetch.CdmFetch, boolean)
335 public List
<Taxon
> getRootTaxa(Reference sec
, CdmFetch cdmFetch
, boolean onlyWithChildren
) {
336 return defaultTaxonService
.getRootTaxa(sec
, cdmFetch
, onlyWithChildren
);
342 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
345 public TaxonBase
find(UUID uuid
) {
346 return defaultTaxonService
.find(uuid
);
352 * @param onlyWithChildren
353 * @param withMisapplications
354 * @param propertyPaths
357 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.name.Rank, eu.etaxonomy.cdm.model.reference.Reference, boolean, boolean, java.util.List)
361 public List
<Taxon
> getRootTaxa(Rank rank
, Reference sec
, boolean onlyWithChildren
, boolean withMisapplications
, List
<String
> propertyPaths
) {
362 return defaultTaxonService
.getRootTaxa(rank
, sec
, onlyWithChildren
, withMisapplications
, propertyPaths
);
368 * @see eu.etaxonomy.cdm.api.service.IService#find(int)
371 public TaxonBase
find(int id
) {
372 return defaultTaxonService
.find(id
);
379 * @param propertyPaths
381 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
384 public Pager
<Rights
> getRights(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
385 return defaultTaxonService
.getRights(t
, pageSize
, pageNumber
, propertyPaths
);
392 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
395 public int countMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
) {
396 return defaultTaxonService
.countMarkers(clazz
, technical
);
402 * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
405 public List
<TaxonBase
> findById(Set
<Integer
> idSet
) {
406 return defaultTaxonService
.findById(idSet
);
414 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
417 public ISourceable
getSourcedObjectByIdInSource(Class clazz
, String idInSource
, String idNamespace
) {
418 return defaultTaxonService
.getSourcedObjectByIdInSource(clazz
, idInSource
, idNamespace
);
423 * @see eu.etaxonomy.cdm.api.service.IService#getSession()
426 public Session
getSession() {
427 return defaultTaxonService
.getSession();
432 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
435 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCache() {
436 return defaultTaxonService
.getUuidAndTitleCache();
444 * @param propertyPaths
446 * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
449 public List
<Object
[]> group(Class
<?
extends TaxonBase
> clazz
, Integer limit
, Integer start
, List
<Grouping
> groups
, List
<String
> propertyPaths
) {
450 return defaultTaxonService
.group(clazz
, limit
, start
, groups
, propertyPaths
);
457 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllRelationships(int, int)
460 public List
<RelationshipBase
> getAllRelationships(int limit
, int start
) {
461 return defaultTaxonService
.getAllRelationships(limit
, start
);
472 * @param propertyPaths
474 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
477 public Pager
<TaxonBase
> findByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
478 return defaultTaxonService
.findByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
484 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getTaxonRelationshipTypeVocabulary()
488 public OrderedTermVocabulary
<TaxonRelationshipType
> getTaxonRelationshipTypeVocabulary() {
489 return defaultTaxonService
.getTaxonRelationshipTypeVocabulary();
496 * @see eu.etaxonomy.cdm.api.service.ITaxonService#searchTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)
499 public List
<TaxonBase
> searchTaxaByName(String name
, Reference sec
) {
500 return defaultTaxonService
.searchTaxaByName(name
, sec
);
505 * @param acceptedTaxon
506 * @see eu.etaxonomy.cdm.api.service.ITaxonService#swapSynonymAndAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
509 public void swapSynonymAndAcceptedTaxon(Synonym synonym
, Taxon acceptedTaxon
) {
510 defaultTaxonService
.swapSynonymAndAcceptedTaxon(synonym
, acceptedTaxon
);
518 * @param propertyPaths
520 * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
523 public <S
extends TaxonBase
> List
<S
> list(Class
<S
> type
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
524 return defaultTaxonService
.list(type
, limit
, start
, orderHints
, propertyPaths
);
528 * @param configurator
530 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
533 public Pager
<TaxonBase
> findByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
534 return defaultTaxonService
.findByTitle(configurator
);
539 * @param acceptedTaxon
540 * @param deleteSynonym
541 * @param copyCitationInfo
543 * @param microCitation
545 * @throws HomotypicalGroupChangeException
546 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
549 public Taxon
changeSynonymToAcceptedTaxon(Synonym synonym
, Taxon acceptedTaxon
, boolean deleteSynonym
, boolean copyCitationInfo
, Reference citation
, String microCitation
) throws HomotypicalGroupChangeException
{
550 return defaultTaxonService
.changeSynonymToAcceptedTaxon(synonym
, acceptedTaxon
, deleteSynonym
, copyCitationInfo
, citation
, microCitation
);
559 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
562 public Integer
countByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
) {
563 return defaultTaxonService
.countByTitle(clazz
, queryString
, matchmode
, criteria
);
569 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
572 public TaxonBase
load(UUID uuid
) {
573 return defaultTaxonService
.load(uuid
);
578 * @param propertyPaths
580 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
583 public TaxonBase
load(UUID uuid
, List
<String
> propertyPaths
) {
584 return defaultTaxonService
.load(uuid
, propertyPaths
);
588 * @param configurator
590 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
593 public Integer
countByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
594 return defaultTaxonService
.countByTitle(configurator
);
598 * @param transientObject
600 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
603 public TaxonBase
merge(TaxonBase transientObject
) {
604 return defaultTaxonService
.merge(transientObject
);
615 * @param propertyPaths
617 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
620 public List
<TaxonBase
> listByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
621 return defaultTaxonService
.listByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
629 * @param propertyPaths
631 * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
634 public <S
extends TaxonBase
> Pager
<S
> page(Class
<S
> type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
635 return defaultTaxonService
.page(type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
639 * @param persistentObject
641 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
644 public UUID
refresh(TaxonBase persistentObject
) {
645 return defaultTaxonService
.refresh(persistentObject
);
651 * @param taxonRelationshipType
653 * @param microReference
655 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToRelatedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
658 public Taxon
changeSynonymToRelatedTaxon(Synonym synonym
, Taxon toTaxon
, TaxonRelationshipType taxonRelationshipType
, Reference reference
, String microReference
) {
659 return defaultTaxonService
.changeSynonymToRelatedTaxon(synonym
, toTaxon
, taxonRelationshipType
, reference
, microReference
);
670 * @param propertyPaths
672 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
675 public List
<TaxonBase
> listByReferenceTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
676 return defaultTaxonService
.listByReferenceTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
684 * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
687 public List
<TaxonBase
> rows(String tableName
, int limit
, int start
) {
688 return defaultTaxonService
.rows(tableName
, limit
, start
);
692 * @param newInstances
694 * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
697 public Map
<UUID
, TaxonBase
> save(Collection
<TaxonBase
> newInstances
) {
705 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
708 public long deleteSynonymRelationships(Synonym syn
, Taxon taxon
) {
709 return defaultTaxonService
.deleteSynonymRelationships(syn
, taxon
);
715 * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
718 public UUID
save(TaxonBase newInstance
) {
723 * @param transientObject
725 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
728 public UUID
saveOrUpdate(TaxonBase transientObject
) {
734 * @param newHomotypicalGroup
736 * @param removeFromOtherTaxa
737 * @param setBasionymRelationIfApplicable
738 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeHomotypicalGroupOfSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.name.HomotypicalGroup, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean)
741 public void changeHomotypicalGroupOfSynonym(Synonym synonym
, HomotypicalGroup newHomotypicalGroup
, Taxon targetTaxon
, boolean removeFromOtherTaxa
, boolean setBasionymRelationIfApplicable
) {
742 defaultTaxonService
.changeHomotypicalGroupOfSynonym(synonym
, newHomotypicalGroup
, targetTaxon
, removeFromOtherTaxa
, setBasionymRelationIfApplicable
);
746 * @param transientObjects
748 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
751 public Map
<UUID
, TaxonBase
> saveOrUpdate(Collection
<TaxonBase
> transientObjects
) {
756 * @param transientObject
758 * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
761 public UUID
update(TaxonBase transientObject
) {
762 return defaultTaxonService
.update(transientObject
);
767 * @param includeProperties
771 * @param propertyPaths
773 * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
776 public List
<TaxonBase
> list(TaxonBase example
, Set
<String
> includeProperties
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
777 return defaultTaxonService
.list(example
, includeProperties
, limit
, start
, orderHints
, propertyPaths
);
781 * @param oldSynonymRelation
783 * @param moveHomotypicGroup
784 * @param newSynonymRelationshipType
785 * @param newReference
786 * @param newReferenceDetail
787 * @param keepReference
789 * @throws HomotypicalGroupChangeException
790 * @see eu.etaxonomy.cdm.api.service.ITaxonService#moveSynonymToAnotherTaxon(eu.etaxonomy.cdm.model.taxon.SynonymRelationship, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String, boolean)
793 public SynonymRelationship
moveSynonymToAnotherTaxon(SynonymRelationship oldSynonymRelation
, Taxon newTaxon
, boolean moveHomotypicGroup
, SynonymRelationshipType newSynonymRelationshipType
, Reference newReference
, String newReferenceDetail
, boolean keepReference
) throws HomotypicalGroupChangeException
{
794 return defaultTaxonService
.moveSynonymToAnotherTaxon(oldSynonymRelation
, newTaxon
, moveHomotypicGroup
, newSynonymRelationshipType
, newReference
, newReferenceDetail
, keepReference
);
799 * @param matchStrategy
800 * @param mergeStrategy
802 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
805 public int deduplicate(Class
<?
extends TaxonBase
> clazz
, IMatchStrategy matchStrategy
, IMergeStrategy mergeStrategy
) {
806 return defaultTaxonService
.deduplicate(clazz
, matchStrategy
, mergeStrategy
);
817 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
820 public Pager
<TaxonBase
> findTitleCache(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, MatchMode matchMode
) {
821 return defaultTaxonService
.findTitleCache(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, matchMode
);
830 * @param propertyPaths
832 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
835 public List
<TaxonRelationship
> listToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
836 return defaultTaxonService
.listToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
845 * @param propertyPaths
847 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
850 public Pager
<TaxonRelationship
> pageToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
851 return defaultTaxonService
.pageToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
860 * @param propertyPaths
862 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
865 public List
<TaxonRelationship
> listFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
866 return defaultTaxonService
.listFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
875 * @param propertyPaths
877 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
880 public Pager
<TaxonRelationship
> pageFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
881 return defaultTaxonService
.pageFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
886 * @param includeRelationships
890 * @param propertyPaths
892 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listRelatedTaxa(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List)
895 public Set
<Taxon
> listRelatedTaxa(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Integer maxDepth
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
896 return defaultTaxonService
.listRelatedTaxa(taxon
, includeRelationships
, maxDepth
, limit
, start
, propertyPaths
);
903 * @param propertyPaths
905 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listClassifications(eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
908 public List
<Classification
> listClassifications(TaxonBase taxonBase
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
909 return defaultTaxonService
.listClassifications(taxonBase
, limit
, start
, propertyPaths
);
918 * @param propertyPaths
920 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
923 public Pager
<SynonymRelationship
> getSynonyms(Synonym synonym
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
924 return defaultTaxonService
.getSynonyms(synonym
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
933 * @param propertyPaths
935 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
938 public Pager
<SynonymRelationship
> getSynonyms(Taxon taxon
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
939 return defaultTaxonService
.getSynonyms(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
944 * @param propertyPaths
946 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHomotypicSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
949 public List
<Synonym
> getHomotypicSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
950 return defaultTaxonService
.getHomotypicSynonymsByHomotypicGroup(taxon
, propertyPaths
);
955 * @param propertyPaths
957 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHeterotypicSynonymyGroups(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
960 public List
<List
<Synonym
>> getHeterotypicSynonymyGroups(Taxon taxon
, List
<String
> propertyPaths
) {
961 return defaultTaxonService
.getHeterotypicSynonymyGroups(taxon
, propertyPaths
);
970 * @param propertyPaths
972 * @see eu.etaxonomy.cdm.api.service.ITaxonService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
975 public Pager
<TaxonBase
> search(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
976 return defaultTaxonService
.search(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
982 * @param infragenericEpithet
983 * @param specificEpithet
984 * @param infraspecificEpithet
989 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
992 public Pager
<TaxonBase
> findTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
993 return defaultTaxonService
.findTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
999 * @param infragenericEpithet
1000 * @param specificEpithet
1001 * @param infraspecificEpithet
1006 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
1009 public List
<TaxonBase
> listTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
1010 return defaultTaxonService
.listTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
1014 * @param configurator
1016 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNames(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1019 public Pager
<IdentifiableEntity
> findTaxaAndNames(IFindTaxaAndNamesConfigurator configurator
) {
1020 return defaultTaxonService
.findTaxaAndNames(configurator
);
1024 * @param queryString
1025 * @param classification
1027 * @param highlightFragments
1031 * @param propertyPaths
1033 * @throws CorruptIndexException
1034 * @throws IOException
1035 * @throws ParseException
1036 * @throws LuceneMultiSearchException
1038 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByEverythingFullText(java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1042 public Pager
<SearchResult
<TaxonBase
>> findByEverythingFullText(String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1043 return defaultTaxonService
.findByEverythingFullText(queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1048 * @param queryString
1049 * @param classification
1051 * @param highlightFragments
1055 * @param propertyPaths
1057 * @throws CorruptIndexException
1058 * @throws IOException
1059 * @throws ParseException
1060 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1063 public Pager
<SearchResult
<TaxonBase
>> findByFullText(Class
<?
extends TaxonBase
> clazz
, String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1064 return defaultTaxonService
.findByFullText(clazz
, queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1069 * @param statusFilter
1070 * @param classification
1074 * @param propertyPaths
1076 * @throws IOException
1077 * @throws ParseException
1078 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDistribution(java.util.List, java.util.List, eu.etaxonomy.cdm.model.taxon.Classification, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1081 public Pager
<SearchResult
<TaxonBase
>> findByDistribution(List
<NamedArea
> areaFilter
, List
<PresenceAbsenceTermBase
<?
>> statusFilter
, Classification classification
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws IOException
, ParseException
{
1082 return defaultTaxonService
.findByDistribution(areaFilter
, statusFilter
, classification
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1086 * @param searchModes
1087 * @param queryString
1088 * @param classification
1090 * @param distributionStatus
1092 * @param highlightFragments
1096 * @param propertyPaths
1098 * @throws CorruptIndexException
1099 * @throws IOException
1100 * @throws ParseException
1101 * @throws LuceneMultiSearchException
1102 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesByFullText(java.util.EnumSet, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.Set, java.util.Set, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1105 public Pager
<SearchResult
<TaxonBase
>> findTaxaAndNamesByFullText(EnumSet
<TaxaAndNamesSearchMode
> searchModes
, String queryString
, Classification classification
, Set
<NamedArea
> namedAreas
, Set
<PresenceAbsenceTermBase
<?
>> distributionStatus
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1106 return defaultTaxonService
.findTaxaAndNamesByFullText(searchModes
, queryString
, classification
, namedAreas
, distributionStatus
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1111 * @param queryString
1112 * @param classification
1115 * @param highlightFragments
1119 * @param propertyPaths
1121 * @throws CorruptIndexException
1122 * @throws IOException
1123 * @throws ParseException
1124 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDescriptionElementFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1127 public Pager
<SearchResult
<TaxonBase
>> findByDescriptionElementFullText(Class
<?
extends DescriptionElementBase
> clazz
, String queryString
, Classification classification
, List
<Feature
> features
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1128 return defaultTaxonService
.findByDescriptionElementFullText(clazz
, queryString
, classification
, features
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1135 * @param widthOrDuration
1139 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllMedia(eu.etaxonomy.cdm.model.taxon.Taxon, int, int, int, java.lang.String[])
1143 public List
<MediaRepresentation
> getAllMedia(Taxon taxon
, int size
, int height
, int widthOrDuration
, String
[] mimeTypes
) {
1144 return defaultTaxonService
.getAllMedia(taxon
, size
, height
, widthOrDuration
, mimeTypes
);
1149 * @param includeRelationships
1150 * @param limitToGalleries
1151 * @param propertyPath
1154 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxonDescriptionMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, boolean, java.util.List)
1158 public List
<Media
> listTaxonDescriptionMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, boolean limitToGalleries
, List
<String
> propertyPath
) {
1159 return defaultTaxonService
.listTaxonDescriptionMedia(taxon
, includeRelationships
, limitToGalleries
, propertyPath
);
1164 * @param includeRelationships
1165 * @param limitToGalleries
1166 * @param includeTaxonDescriptions
1167 * @param includeOccurrences
1168 * @param includeTaxonNameDescriptions
1169 * @param propertyPath
1171 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.util.List)
1174 public List
<Media
> listMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Boolean limitToGalleries
, Boolean includeTaxonDescriptions
, Boolean includeOccurrences
, Boolean includeTaxonNameDescriptions
, List
<String
> propertyPath
) {
1175 return defaultTaxonService
.listMedia(taxon
, includeRelationships
, limitToGalleries
, includeTaxonDescriptions
, includeOccurrences
, includeTaxonNameDescriptions
, propertyPath
);
1181 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByID(java.util.Set)
1184 public List
<TaxonBase
> findTaxaByID(Set
<Integer
> listOfIDs
) {
1185 return defaultTaxonService
.findTaxaByID(listOfIDs
);
1190 * @param propertyPaths
1192 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxonByUuid(java.util.UUID, java.util.List)
1195 public TaxonBase
findTaxonByUuid(UUID uuid
, List
<String
> propertyPaths
) {
1196 return defaultTaxonService
.findTaxonByUuid(uuid
, propertyPaths
);
1201 * @see eu.etaxonomy.cdm.api.service.ITaxonService#countAllRelationships()
1204 public int countAllRelationships() {
1205 return defaultTaxonService
.countAllRelationships();
1209 * @param propertyPath
1211 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNames(java.util.List)
1214 public List
<TaxonNameBase
> findIdenticalTaxonNames(List
<String
> propertyPath
) {
1215 return defaultTaxonService
.findIdenticalTaxonNames(propertyPath
);
1219 * @param propertyPath
1221 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNameIds(java.util.List)
1224 public List
<TaxonNameBase
> findIdenticalTaxonNameIds(List
<String
> propertyPath
) {
1225 return defaultTaxonService
.findIdenticalTaxonNameIds(propertyPath
);
1231 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getPhylumName(eu.etaxonomy.cdm.model.name.TaxonNameBase)
1234 public String
getPhylumName(TaxonNameBase name
) {
1235 return defaultTaxonService
.getPhylumName(name
);
1241 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym)
1244 public long deleteSynonymRelationships(Synonym syn
) {
1245 return defaultTaxonService
.deleteSynonymRelationships(syn
);
1254 * @param propertyPaths
1257 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listSynonymRelationships(eu.etaxonomy.cdm.model.taxon.TaxonBase, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List, eu.etaxonomy.cdm.model.common.RelationshipBase.Direction)
1260 public List
<SynonymRelationship
> listSynonymRelationships(TaxonBase taxonBase
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
, Direction direction
) {
1261 return defaultTaxonService
.listSynonymRelationships(taxonBase
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
, direction
);
1267 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(java.lang.String)
1270 public Taxon
findBestMatchingTaxon(String taxonName
) {
1271 return defaultTaxonService
.findBestMatchingTaxon(taxonName
);
1277 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
1280 public Taxon
findBestMatchingTaxon(MatchingTaxonConfigurator config
) {
1281 return defaultTaxonService
.findBestMatchingTaxon(config
);
1287 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingSynonym(java.lang.String)
1290 public Synonym
findBestMatchingSynonym(String taxonName
) {
1291 return defaultTaxonService
.findBestMatchingSynonym(taxonName
);
1296 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheTaxon()
1299 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheTaxon() {
1300 return defaultTaxonService
.getUuidAndTitleCacheTaxon();
1305 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheSynonym()
1308 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheSynonym() {
1309 return defaultTaxonService
.getUuidAndTitleCacheSynonym();
1313 * @param configurator
1315 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesForEditor(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1318 public List
<UuidAndTitleCache
<IdentifiableEntity
>> findTaxaAndNamesForEditor(IFindTaxaAndNamesConfigurator configurator
) {
1319 return defaultTaxonService
.findTaxaAndNamesForEditor(configurator
);
1326 * @param doWithMisappliedNames
1328 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, boolean)
1331 public List
<Synonym
> createInferredSynonyms(Taxon taxon
, Classification tree
, SynonymRelationshipType type
, boolean doWithMisappliedNames
) {
1332 return defaultTaxonService
.createInferredSynonyms(taxon
, tree
, type
, doWithMisappliedNames
);
1338 * @param doWithMisappliedNames
1340 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createAllInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, boolean)
1343 public List
<Synonym
> createAllInferredSynonyms(Taxon taxon
, Classification tree
, boolean doWithMisappliedNames
) {
1344 return defaultTaxonService
.createAllInferredSynonyms(taxon
, tree
, doWithMisappliedNames
);
1348 public DeleteResult
deleteSynonym(Synonym arg0
, SynonymDeletionConfigurator arg1
) {
1349 return defaultTaxonService
.deleteSynonym(arg0
, arg1
);
1353 public DeleteResult
deleteSynonym(Synonym arg0
, Taxon arg1
, SynonymDeletionConfigurator arg2
) {
1354 return defaultTaxonService
.deleteSynonym(arg0
, arg1
, arg2
);
1358 public DeleteResult
deleteTaxon(Taxon arg0
, TaxonDeletionConfigurator arg1
, Classification arg2
) {
1359 return defaultTaxonService
.deleteTaxon(arg0
, arg1
, arg2
);
1363 public List
<List
<Synonym
>> getSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
1364 return defaultTaxonService
.getSynonymsByHomotypicGroup(taxon
, propertyPaths
);
1368 public Synonym
changeRelatedTaxonToSynonym(Taxon fromTaxon
, Taxon toTaxon
,
1369 TaxonRelationshipType oldRelationshipType
,
1370 SynonymRelationshipType synonymRelationshipType
)
1371 throws DataChangeNoRollbackException
{
1373 return defaultTaxonService
.changeRelatedTaxonToSynonym(fromTaxon
, toTaxon
, oldRelationshipType
, synonymRelationshipType
);
1377 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1380 public Pager
<Taxon
> pageAcceptedTaxaFor(UUID synonymUuid
, UUID classificationUuid
, Integer pageSize
,
1381 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
1382 return defaultTaxonService
.pageAcceptedTaxaFor(synonymUuid
, classificationUuid
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1386 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1389 public List
<Taxon
> listAcceptedTaxaFor(UUID synonymUuid
, UUID classificationUuid
, Integer pageSize
,
1390 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
1391 return defaultTaxonService
.listAcceptedTaxaFor(synonymUuid
, classificationUuid
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1395 public List
<String
> isDeletable(TaxonBase object
,
1396 DeleteConfiguratorBase config
) {
1397 // TODO Auto-generated method stub
1402 public IncludedTaxaDTO
listIncludedTaxa(UUID taxonUuid
,
1403 IncludedTaxonConfiguration configuration
) {
1404 // TODO Auto-generated method stub
1409 public TaxonBase
findWithoutFlush(UUID uuid
) {
1410 return defaultTaxonService
.findWithoutFlush(uuid
);
1414 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
1417 public List
<TaxonBase
> findTaxaByName(MatchingTaxonConfigurator config
) {
1418 return defaultTaxonService
.findTaxaByName(config
);