merge from trunk
[taxeditor.git] / eu.etaxonomy.taxeditor.editor / src / main / java / eu / etaxonomy / taxeditor / editor / view / dataimport / transientServices / TransientTaxonService.java
1 // $Id$
2 /**
3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
6 *
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
9 */
10 package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices;
11
12 import java.io.IOException;
13 import java.util.Collection;
14 import java.util.EnumSet;
15 import java.util.List;
16 import java.util.Map;
17 import java.util.Set;
18 import java.util.UUID;
19
20 import org.apache.lucene.index.CorruptIndexException;
21 import org.apache.lucene.queryParser.ParseException;
22 import org.hibernate.LockOptions;
23 import org.hibernate.Session;
24 import org.hibernate.criterion.Criterion;
25 import org.hibernate.envers.query.criteria.AuditCriterion;
26
27 import eu.etaxonomy.cdm.api.service.DeleteResult;
28 import eu.etaxonomy.cdm.api.service.ITaxonService;
29 import eu.etaxonomy.cdm.api.service.TaxaAndNamesSearchMode;
30 import eu.etaxonomy.cdm.api.service.config.DeleteConfiguratorBase;
31 import eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator;
32 import eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator;
33 import eu.etaxonomy.cdm.api.service.config.IncludedTaxonConfiguration;
34 import eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator;
35 import eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator;
36 import eu.etaxonomy.cdm.api.service.config.TaxonDeletionConfigurator;
37 import eu.etaxonomy.cdm.api.service.dto.IncludedTaxaDTO;
38 import eu.etaxonomy.cdm.api.service.exception.DataChangeNoRollbackException;
39 import eu.etaxonomy.cdm.api.service.exception.HomotypicalGroupChangeException;
40 import eu.etaxonomy.cdm.api.service.pager.Pager;
41 import eu.etaxonomy.cdm.api.service.search.LuceneMultiSearchException;
42 import eu.etaxonomy.cdm.api.service.search.SearchResult;
43 import eu.etaxonomy.cdm.api.service.util.TaxonRelationshipEdge;
44 import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
45 import eu.etaxonomy.cdm.model.common.Annotation;
46 import eu.etaxonomy.cdm.model.common.ISourceable;
47 import eu.etaxonomy.cdm.model.common.IdentifiableEntity;
48 import eu.etaxonomy.cdm.model.common.IdentifiableSource;
49 import eu.etaxonomy.cdm.model.common.LSID;
50 import eu.etaxonomy.cdm.model.common.Language;
51 import eu.etaxonomy.cdm.model.common.Marker;
52 import eu.etaxonomy.cdm.model.common.MarkerType;
53 import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary;
54 import eu.etaxonomy.cdm.model.common.RelationshipBase;
55 import eu.etaxonomy.cdm.model.common.RelationshipBase.Direction;
56 import eu.etaxonomy.cdm.model.common.UuidAndTitleCache;
57 import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
58 import eu.etaxonomy.cdm.model.description.Feature;
59 import eu.etaxonomy.cdm.model.description.PresenceAbsenceTermBase;
60 import eu.etaxonomy.cdm.model.location.NamedArea;
61 import eu.etaxonomy.cdm.model.media.Media;
62 import eu.etaxonomy.cdm.model.media.MediaRepresentation;
63 import eu.etaxonomy.cdm.model.media.Rights;
64 import eu.etaxonomy.cdm.model.name.HomotypicalGroup;
65 import eu.etaxonomy.cdm.model.name.Rank;
66 import eu.etaxonomy.cdm.model.name.TaxonNameBase;
67 import eu.etaxonomy.cdm.model.reference.Reference;
68 import eu.etaxonomy.cdm.model.taxon.Classification;
69 import eu.etaxonomy.cdm.model.taxon.Synonym;
70 import eu.etaxonomy.cdm.model.taxon.SynonymRelationship;
71 import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType;
72 import eu.etaxonomy.cdm.model.taxon.Taxon;
73 import eu.etaxonomy.cdm.model.taxon.TaxonBase;
74 import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
75 import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
76 import eu.etaxonomy.cdm.model.view.AuditEvent;
77 import eu.etaxonomy.cdm.model.view.AuditEventRecord;
78 import eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort;
79 import eu.etaxonomy.cdm.persistence.fetch.CdmFetch;
80 import eu.etaxonomy.cdm.persistence.query.Grouping;
81 import eu.etaxonomy.cdm.persistence.query.MatchMode;
82 import eu.etaxonomy.cdm.persistence.query.OrderHint;
83 import eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy;
84 import eu.etaxonomy.cdm.strategy.match.IMatchStrategy;
85 import eu.etaxonomy.cdm.strategy.merge.IMergeStrategy;
86 import eu.etaxonomy.taxeditor.ui.section.supplemental.IdentifiableSourceElement;
87
88 /**
89 * @author pplitzner
90 * @date 27.09.2013
91 *
92 */
93 public class TransientTaxonService implements ITaxonService {
94
95 private final ITaxonService defaultTaxonService;
96
97 /**
98 * @param defaultTaxonService
99 */
100 public TransientTaxonService(ITaxonService defaultTaxonService) {
101 this.defaultTaxonService = defaultTaxonService;
102 }
103
104 /**
105 * @param t
106 * @param pageSize
107 * @param pageNumber
108 * @param sort
109 * @param propertyPaths
110 * @return
111 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
112 */
113 @Override
114 public Pager<AuditEventRecord<TaxonBase>> pageAuditEvents(TaxonBase t, Integer pageSize, Integer pageNumber, AuditEventSort sort, List<String> propertyPaths) {
115 return defaultTaxonService.pageAuditEvents(t, pageSize, pageNumber, sort, propertyPaths);
116 }
117
118 /**
119 * @param annotatedObj
120 * @param status
121 * @param pageSize
122 * @param pageNumber
123 * @param orderHints
124 * @param propertyPaths
125 * @return
126 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
127 */
128 @Override
129 public Pager<Annotation> getAnnotations(TaxonBase annotatedObj, MarkerType status, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
130 return defaultTaxonService.getAnnotations(annotatedObj, status, pageSize, pageNumber, orderHints, propertyPaths);
131 }
132
133 /**
134 *
135 * @see eu.etaxonomy.cdm.api.service.IService#clear()
136 */
137 @Override
138 public void clear() {
139 defaultTaxonService.clear();
140 }
141
142 /**
143 * @param t
144 * @param lockMode
145 * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
146 */
147 @Override
148 public void lock(TaxonBase t, LockOptions lockOptions) {
149 defaultTaxonService.lock(t, lockOptions);
150 }
151
152 /**
153 * @param t
154 * @param lockMode
155 * @param propertyPaths
156 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
157 */
158 @Override
159 public void refresh(TaxonBase t, LockOptions lockOptions, List<String> propertyPaths) {
160 defaultTaxonService.refresh(t, lockOptions, propertyPaths);
161 }
162
163 /**
164 *
165 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
166 */
167 @Override
168 public void updateTitleCache() {
169 defaultTaxonService.updateTitleCache();
170 }
171
172 /**
173 * @param t
174 * @return
175 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
176 */
177 @Override
178 public AuditEventRecord<TaxonBase> getNextAuditEvent(TaxonBase t) {
179 return defaultTaxonService.getNextAuditEvent(t);
180 }
181
182 /**
183 * @param annotatableEntity
184 * @param technical
185 * @param pageSize
186 * @param pageNumber
187 * @param orderHints
188 * @param propertyPaths
189 * @return
190 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
191 */
192 @Override
193 public Pager<Marker> getMarkers(TaxonBase annotatableEntity, Boolean technical, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
194 return defaultTaxonService.getMarkers(annotatableEntity, technical, pageSize, pageNumber, orderHints, propertyPaths);
195 }
196
197 /**
198 * @param clazz
199 * @param stepSize
200 * @param cacheStrategy
201 * @param monitor
202 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
203 */
204 @Override
205 public void updateTitleCache(Class<? extends TaxonBase> clazz, Integer stepSize, IIdentifiableEntityCacheStrategy<TaxonBase> cacheStrategy, IProgressMonitor monitor) {
206 defaultTaxonService.updateTitleCache(clazz, stepSize, cacheStrategy, monitor);
207 }
208
209 /**
210 * @param t
211 * @return
212 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
213 */
214 @Override
215 public AuditEventRecord<TaxonBase> getPreviousAuditEvent(TaxonBase t) {
216 return defaultTaxonService.getPreviousAuditEvent(t);
217 }
218
219 /**
220 * @param clazz
221 * @return
222 * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
223 */
224 @Override
225 public int count(Class<? extends TaxonBase> clazz) {
226 return defaultTaxonService.count(clazz);
227 }
228
229 /**
230 * @param clazz
231 * @param from
232 * @param to
233 * @param criteria
234 * @param pageSize
235 * @param pageValue
236 * @param sort
237 * @param propertyPaths
238 * @return
239 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
240 */
241 @Override
242 public Pager<AuditEventRecord<TaxonBase>> pageAuditEvents(Class<? extends TaxonBase> clazz, AuditEvent from, AuditEvent to, List<AuditCriterion> criteria, Integer pageSize, Integer pageValue, AuditEventSort sort, List<String> propertyPaths) {
243 return defaultTaxonService.pageAuditEvents(clazz, from, to, criteria, pageSize, pageValue, sort, propertyPaths);
244 }
245
246 /**
247 * @param lsid
248 * @return
249 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
250 */
251 @Override
252 public TaxonBase find(LSID lsid) {
253 return defaultTaxonService.find(lsid);
254 }
255
256 /**
257 * @param persistentObject
258 * @return
259 * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
260 */
261 @Override
262 public DeleteResult delete(TaxonBase persistentObject) {
263 return defaultTaxonService.delete(persistentObject);
264 }
265
266 /**
267 * @param clazz
268 * @param technical
269 * @param pageSize
270 * @param pageNumber
271 * @param propertyPaths
272 * @return
273 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
274 */
275 @Override
276 public List<Object[]> groupMarkers(Class<? extends TaxonBase> clazz, Boolean technical, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
277 return defaultTaxonService.groupMarkers(clazz, technical, pageSize, pageNumber, propertyPaths);
278 }
279
280 /**
281 * @param uuid
282 * @return
283 * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
284 */
285 @Override
286 public boolean exists(UUID uuid) {
287 return defaultTaxonService.exists(uuid);
288 }
289
290
291 /**
292 * @param x
293 * @param y
294 * @return
295 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
296 */
297 @Override
298 public TaxonBase replace(TaxonBase x, TaxonBase y) {
299 return defaultTaxonService.replace(x, y);
300 }
301
302 /**
303 * @param uuidSet
304 * @return
305 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
306 */
307 @Override
308 public List<TaxonBase> find(Set<UUID> uuidSet) {
309 return defaultTaxonService.find(uuidSet);
310 }
311
312 /**
313 * @param t
314 * @param pageSize
315 * @param pageNumber
316 * @param propertyPaths
317 * @return
318 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
319 */
320 @Override
321 public Pager<IdentifiableSource> getSources(TaxonBase t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
322 return defaultTaxonService.getSources(t, pageSize, pageNumber, propertyPaths);
323 }
324
325 /**
326 * @param sec
327 * @param cdmFetch
328 * @param onlyWithChildren
329 * @return
330 * @deprecated
331 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.reference.Reference, eu.etaxonomy.cdm.persistence.fetch.CdmFetch, boolean)
332 */
333 @Deprecated
334 @Override
335 public List<Taxon> getRootTaxa(Reference sec, CdmFetch cdmFetch, boolean onlyWithChildren) {
336 return defaultTaxonService.getRootTaxa(sec, cdmFetch, onlyWithChildren);
337 }
338
339 /**
340 * @param uuid
341 * @return
342 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
343 */
344 @Override
345 public TaxonBase find(UUID uuid) {
346 return defaultTaxonService.find(uuid);
347 }
348
349 /**
350 * @param rank
351 * @param sec
352 * @param onlyWithChildren
353 * @param withMisapplications
354 * @param propertyPaths
355 * @return
356 * @deprecated
357 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.name.Rank, eu.etaxonomy.cdm.model.reference.Reference, boolean, boolean, java.util.List)
358 */
359 @Deprecated
360 @Override
361 public List<Taxon> getRootTaxa(Rank rank, Reference sec, boolean onlyWithChildren, boolean withMisapplications, List<String> propertyPaths) {
362 return defaultTaxonService.getRootTaxa(rank, sec, onlyWithChildren, withMisapplications, propertyPaths);
363 }
364
365 /**
366 * @param id
367 * @return
368 * @see eu.etaxonomy.cdm.api.service.IService#find(int)
369 */
370 @Override
371 public TaxonBase find(int id) {
372 return defaultTaxonService.find(id);
373 }
374
375 /**
376 * @param t
377 * @param pageSize
378 * @param pageNumber
379 * @param propertyPaths
380 * @return
381 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
382 */
383 @Override
384 public Pager<Rights> getRights(TaxonBase t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
385 return defaultTaxonService.getRights(t, pageSize, pageNumber, propertyPaths);
386 }
387
388 /**
389 * @param clazz
390 * @param technical
391 * @return
392 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
393 */
394 @Override
395 public int countMarkers(Class<? extends TaxonBase> clazz, Boolean technical) {
396 return defaultTaxonService.countMarkers(clazz, technical);
397 }
398
399 /**
400 * @param idSet
401 * @return
402 * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
403 */
404 @Override
405 public List<TaxonBase> findById(Set<Integer> idSet) {
406 return defaultTaxonService.findById(idSet);
407 }
408
409 /**
410 * @param clazz
411 * @param idInSource
412 * @param idNamespace
413 * @return
414 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
415 */
416 @Override
417 public ISourceable getSourcedObjectByIdInSource(Class clazz, String idInSource, String idNamespace) {
418 return defaultTaxonService.getSourcedObjectByIdInSource(clazz, idInSource, idNamespace);
419 }
420
421 /**
422 * @return
423 * @see eu.etaxonomy.cdm.api.service.IService#getSession()
424 */
425 @Override
426 public Session getSession() {
427 return defaultTaxonService.getSession();
428 }
429
430 /**
431 * @return
432 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
433 */
434 @Override
435 public List<UuidAndTitleCache<TaxonBase>> getUuidAndTitleCache() {
436 return defaultTaxonService.getUuidAndTitleCache();
437 }
438
439 /**
440 * @param clazz
441 * @param limit
442 * @param start
443 * @param groups
444 * @param propertyPaths
445 * @return
446 * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
447 */
448 @Override
449 public List<Object[]> group(Class<? extends TaxonBase> clazz, Integer limit, Integer start, List<Grouping> groups, List<String> propertyPaths) {
450 return defaultTaxonService.group(clazz, limit, start, groups, propertyPaths);
451 }
452
453 /**
454 * @param limit
455 * @param start
456 * @return
457 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllRelationships(int, int)
458 */
459 @Override
460 public List<RelationshipBase> getAllRelationships(int limit, int start) {
461 return defaultTaxonService.getAllRelationships(limit, start);
462 }
463
464 /**
465 * @param clazz
466 * @param queryString
467 * @param matchmode
468 * @param criteria
469 * @param pageSize
470 * @param pageNumber
471 * @param orderHints
472 * @param propertyPaths
473 * @return
474 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
475 */
476 @Override
477 public Pager<TaxonBase> findByTitle(Class<? extends TaxonBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
478 return defaultTaxonService.findByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
479 }
480
481 /**
482 * @return
483 * @deprecated
484 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getTaxonRelationshipTypeVocabulary()
485 */
486 @Deprecated
487 @Override
488 public OrderedTermVocabulary<TaxonRelationshipType> getTaxonRelationshipTypeVocabulary() {
489 return defaultTaxonService.getTaxonRelationshipTypeVocabulary();
490 }
491
492 /**
493 * @param name
494 * @param sec
495 * @return
496 * @see eu.etaxonomy.cdm.api.service.ITaxonService#searchTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)
497 */
498 @Override
499 public List<TaxonBase> searchTaxaByName(String name, Reference sec) {
500 return defaultTaxonService.searchTaxaByName(name, sec);
501 }
502
503 /**
504 * @param synonym
505 * @param acceptedTaxon
506 * @see eu.etaxonomy.cdm.api.service.ITaxonService#swapSynonymAndAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
507 */
508 @Override
509 public void swapSynonymAndAcceptedTaxon(Synonym synonym, Taxon acceptedTaxon) {
510 defaultTaxonService.swapSynonymAndAcceptedTaxon(synonym, acceptedTaxon);
511 }
512
513 /**
514 * @param type
515 * @param limit
516 * @param start
517 * @param orderHints
518 * @param propertyPaths
519 * @return
520 * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
521 */
522 @Override
523 public <S extends TaxonBase> List<S> list(Class<S> type, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
524 return defaultTaxonService.list(type, limit, start, orderHints, propertyPaths);
525 }
526
527 /**
528 * @param configurator
529 * @return
530 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
531 */
532 @Override
533 public Pager<TaxonBase> findByTitle(IIdentifiableEntityServiceConfigurator<TaxonBase> configurator) {
534 return defaultTaxonService.findByTitle(configurator);
535 }
536
537 /**
538 * @param synonym
539 * @param acceptedTaxon
540 * @param deleteSynonym
541 * @param copyCitationInfo
542 * @param citation
543 * @param microCitation
544 * @return
545 * @throws HomotypicalGroupChangeException
546 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
547 */
548 @Override
549 public Taxon changeSynonymToAcceptedTaxon(Synonym synonym, Taxon acceptedTaxon, boolean deleteSynonym, boolean copyCitationInfo, Reference citation, String microCitation) throws HomotypicalGroupChangeException {
550 return defaultTaxonService.changeSynonymToAcceptedTaxon(synonym, acceptedTaxon, deleteSynonym, copyCitationInfo, citation, microCitation);
551 }
552
553 /**
554 * @param clazz
555 * @param queryString
556 * @param matchmode
557 * @param criteria
558 * @return
559 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
560 */
561 @Override
562 public Integer countByTitle(Class<? extends TaxonBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria) {
563 return defaultTaxonService.countByTitle(clazz, queryString, matchmode, criteria);
564 }
565
566 /**
567 * @param uuid
568 * @return
569 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
570 */
571 @Override
572 public TaxonBase load(UUID uuid) {
573 return defaultTaxonService.load(uuid);
574 }
575
576 /**
577 * @param uuid
578 * @param propertyPaths
579 * @return
580 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
581 */
582 @Override
583 public TaxonBase load(UUID uuid, List<String> propertyPaths) {
584 return defaultTaxonService.load(uuid, propertyPaths);
585 }
586
587 /**
588 * @param configurator
589 * @return
590 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
591 */
592 @Override
593 public Integer countByTitle(IIdentifiableEntityServiceConfigurator<TaxonBase> configurator) {
594 return defaultTaxonService.countByTitle(configurator);
595 }
596
597 /**
598 * @param transientObject
599 * @return
600 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
601 */
602 @Override
603 public TaxonBase merge(TaxonBase transientObject) {
604 return defaultTaxonService.merge(transientObject);
605 }
606
607 /**
608 * @param clazz
609 * @param queryString
610 * @param matchmode
611 * @param criteria
612 * @param pageSize
613 * @param pageNumber
614 * @param orderHints
615 * @param propertyPaths
616 * @return
617 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
618 */
619 @Override
620 public List<TaxonBase> listByTitle(Class<? extends TaxonBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
621 return defaultTaxonService.listByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
622 }
623
624 /**
625 * @param type
626 * @param pageSize
627 * @param pageNumber
628 * @param orderHints
629 * @param propertyPaths
630 * @return
631 * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
632 */
633 @Override
634 public <S extends TaxonBase> Pager<S> page(Class<S> type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
635 return defaultTaxonService.page(type, pageSize, pageNumber, orderHints, propertyPaths);
636 }
637
638 /**
639 * @param persistentObject
640 * @return
641 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
642 */
643 @Override
644 public UUID refresh(TaxonBase persistentObject) {
645 return defaultTaxonService.refresh(persistentObject);
646 }
647
648 /**
649 * @param synonym
650 * @param toTaxon
651 * @param taxonRelationshipType
652 * @param reference
653 * @param microReference
654 * @return
655 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToRelatedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
656 */
657 @Override
658 public Taxon changeSynonymToRelatedTaxon(Synonym synonym, Taxon toTaxon, TaxonRelationshipType taxonRelationshipType, Reference reference, String microReference) {
659 return defaultTaxonService.changeSynonymToRelatedTaxon(synonym, toTaxon, taxonRelationshipType, reference, microReference);
660 }
661
662 /**
663 * @param clazz
664 * @param queryString
665 * @param matchmode
666 * @param criteria
667 * @param pageSize
668 * @param pageNumber
669 * @param orderHints
670 * @param propertyPaths
671 * @return
672 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
673 */
674 @Override
675 public List<TaxonBase> listByReferenceTitle(Class<? extends TaxonBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
676 return defaultTaxonService.listByReferenceTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
677 }
678
679 /**
680 * @param tableName
681 * @param limit
682 * @param start
683 * @return
684 * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
685 */
686 @Override
687 public List<TaxonBase> rows(String tableName, int limit, int start) {
688 return defaultTaxonService.rows(tableName, limit, start);
689 }
690
691 /**
692 * @param newInstances
693 * @return
694 * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
695 */
696 @Override
697 public Map<UUID, TaxonBase> save(Collection<TaxonBase> newInstances) {
698 return null;
699 }
700
701 /**
702 * @param syn
703 * @param taxon
704 * @return
705 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
706 */
707 @Override
708 public long deleteSynonymRelationships(Synonym syn, Taxon taxon) {
709 return defaultTaxonService.deleteSynonymRelationships(syn, taxon);
710 }
711
712 /**
713 * @param newInstance
714 * @return
715 * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
716 */
717 @Override
718 public UUID save(TaxonBase newInstance) {
719 return null;
720 }
721
722 /**
723 * @param transientObject
724 * @return
725 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
726 */
727 @Override
728 public UUID saveOrUpdate(TaxonBase transientObject) {
729 return null;
730 }
731
732 /**
733 * @param synonym
734 * @param newHomotypicalGroup
735 * @param targetTaxon
736 * @param removeFromOtherTaxa
737 * @param setBasionymRelationIfApplicable
738 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeHomotypicalGroupOfSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.name.HomotypicalGroup, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean)
739 */
740 @Override
741 public void changeHomotypicalGroupOfSynonym(Synonym synonym, HomotypicalGroup newHomotypicalGroup, Taxon targetTaxon, boolean removeFromOtherTaxa, boolean setBasionymRelationIfApplicable) {
742 defaultTaxonService.changeHomotypicalGroupOfSynonym(synonym, newHomotypicalGroup, targetTaxon, removeFromOtherTaxa, setBasionymRelationIfApplicable);
743 }
744
745 /**
746 * @param transientObjects
747 * @return
748 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
749 */
750 @Override
751 public Map<UUID, TaxonBase> saveOrUpdate(Collection<TaxonBase> transientObjects) {
752 return null;
753 }
754
755 /**
756 * @param transientObject
757 * @return
758 * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
759 */
760 @Override
761 public UUID update(TaxonBase transientObject) {
762 return defaultTaxonService.update(transientObject);
763 }
764
765 /**
766 * @param example
767 * @param includeProperties
768 * @param limit
769 * @param start
770 * @param orderHints
771 * @param propertyPaths
772 * @return
773 * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
774 */
775 @Override
776 public List<TaxonBase> list(TaxonBase example, Set<String> includeProperties, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
777 return defaultTaxonService.list(example, includeProperties, limit, start, orderHints, propertyPaths);
778 }
779
780 /**
781 * @param oldSynonymRelation
782 * @param newTaxon
783 * @param moveHomotypicGroup
784 * @param newSynonymRelationshipType
785 * @param newReference
786 * @param newReferenceDetail
787 * @param keepReference
788 * @return
789 * @throws HomotypicalGroupChangeException
790 * @see eu.etaxonomy.cdm.api.service.ITaxonService#moveSynonymToAnotherTaxon(eu.etaxonomy.cdm.model.taxon.SynonymRelationship, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String, boolean)
791 */
792 @Override
793 public SynonymRelationship moveSynonymToAnotherTaxon(SynonymRelationship oldSynonymRelation, Taxon newTaxon, boolean moveHomotypicGroup, SynonymRelationshipType newSynonymRelationshipType, Reference newReference, String newReferenceDetail, boolean keepReference) throws HomotypicalGroupChangeException {
794 return defaultTaxonService.moveSynonymToAnotherTaxon(oldSynonymRelation, newTaxon, moveHomotypicGroup, newSynonymRelationshipType, newReference, newReferenceDetail, keepReference);
795 }
796
797 /**
798 * @param clazz
799 * @param matchStrategy
800 * @param mergeStrategy
801 * @return
802 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
803 */
804 @Override
805 public int deduplicate(Class<? extends TaxonBase> clazz, IMatchStrategy matchStrategy, IMergeStrategy mergeStrategy) {
806 return defaultTaxonService.deduplicate(clazz, matchStrategy, mergeStrategy);
807 }
808
809 /**
810 * @param clazz
811 * @param queryString
812 * @param pageSize
813 * @param pageNumber
814 * @param orderHints
815 * @param matchMode
816 * @return
817 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
818 */
819 @Override
820 public Pager<TaxonBase> findTitleCache(Class<? extends TaxonBase> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, MatchMode matchMode) {
821 return defaultTaxonService.findTitleCache(clazz, queryString, pageSize, pageNumber, orderHints, matchMode);
822 }
823
824 /**
825 * @param taxon
826 * @param type
827 * @param pageSize
828 * @param pageNumber
829 * @param orderHints
830 * @param propertyPaths
831 * @return
832 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
833 */
834 @Override
835 public List<TaxonRelationship> listToTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
836 return defaultTaxonService.listToTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths);
837 }
838
839 /**
840 * @param taxon
841 * @param type
842 * @param pageSize
843 * @param pageNumber
844 * @param orderHints
845 * @param propertyPaths
846 * @return
847 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
848 */
849 @Override
850 public Pager<TaxonRelationship> pageToTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
851 return defaultTaxonService.pageToTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths);
852 }
853
854 /**
855 * @param taxon
856 * @param type
857 * @param pageSize
858 * @param pageNumber
859 * @param orderHints
860 * @param propertyPaths
861 * @return
862 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
863 */
864 @Override
865 public List<TaxonRelationship> listFromTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
866 return defaultTaxonService.listFromTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths);
867 }
868
869 /**
870 * @param taxon
871 * @param type
872 * @param pageSize
873 * @param pageNumber
874 * @param orderHints
875 * @param propertyPaths
876 * @return
877 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
878 */
879 @Override
880 public Pager<TaxonRelationship> pageFromTaxonRelationships(Taxon taxon, TaxonRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
881 return defaultTaxonService.pageFromTaxonRelationships(taxon, type, pageSize, pageNumber, orderHints, propertyPaths);
882 }
883
884 /**
885 * @param taxon
886 * @param includeRelationships
887 * @param maxDepth
888 * @param limit
889 * @param start
890 * @param propertyPaths
891 * @return
892 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listRelatedTaxa(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List)
893 */
894 @Override
895 public Set<Taxon> listRelatedTaxa(Taxon taxon, Set<TaxonRelationshipEdge> includeRelationships, Integer maxDepth, Integer limit, Integer start, List<String> propertyPaths) {
896 return defaultTaxonService.listRelatedTaxa(taxon, includeRelationships, maxDepth, limit, start, propertyPaths);
897 }
898
899 /**
900 * @param taxonBase
901 * @param limit
902 * @param start
903 * @param propertyPaths
904 * @return
905 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listClassifications(eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
906 */
907 @Override
908 public List<Classification> listClassifications(TaxonBase taxonBase, Integer limit, Integer start, List<String> propertyPaths) {
909 return defaultTaxonService.listClassifications(taxonBase, limit, start, propertyPaths);
910 }
911
912 /**
913 * @param synonym
914 * @param type
915 * @param pageSize
916 * @param pageNumber
917 * @param orderHints
918 * @param propertyPaths
919 * @return
920 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
921 */
922 @Override
923 public Pager<SynonymRelationship> getSynonyms(Synonym synonym, SynonymRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
924 return defaultTaxonService.getSynonyms(synonym, type, pageSize, pageNumber, orderHints, propertyPaths);
925 }
926
927 /**
928 * @param taxon
929 * @param type
930 * @param pageSize
931 * @param pageNumber
932 * @param orderHints
933 * @param propertyPaths
934 * @return
935 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
936 */
937 @Override
938 public Pager<SynonymRelationship> getSynonyms(Taxon taxon, SynonymRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
939 return defaultTaxonService.getSynonyms(taxon, type, pageSize, pageNumber, orderHints, propertyPaths);
940 }
941
942 /**
943 * @param taxon
944 * @param propertyPaths
945 * @return
946 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHomotypicSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
947 */
948 @Override
949 public List<Synonym> getHomotypicSynonymsByHomotypicGroup(Taxon taxon, List<String> propertyPaths) {
950 return defaultTaxonService.getHomotypicSynonymsByHomotypicGroup(taxon, propertyPaths);
951 }
952
953 /**
954 * @param taxon
955 * @param propertyPaths
956 * @return
957 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHeterotypicSynonymyGroups(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
958 */
959 @Override
960 public List<List<Synonym>> getHeterotypicSynonymyGroups(Taxon taxon, List<String> propertyPaths) {
961 return defaultTaxonService.getHeterotypicSynonymyGroups(taxon, propertyPaths);
962 }
963
964 /**
965 * @param clazz
966 * @param queryString
967 * @param pageSize
968 * @param pageNumber
969 * @param orderHints
970 * @param propertyPaths
971 * @return
972 * @see eu.etaxonomy.cdm.api.service.ITaxonService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
973 */
974 @Override
975 public Pager<TaxonBase> search(Class<? extends TaxonBase> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
976 return defaultTaxonService.search(clazz, queryString, pageSize, pageNumber, orderHints, propertyPaths);
977 }
978
979 /**
980 * @param clazz
981 * @param uninomial
982 * @param infragenericEpithet
983 * @param specificEpithet
984 * @param infraspecificEpithet
985 * @param rank
986 * @param pageSize
987 * @param pageNumber
988 * @return
989 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
990 */
991 @Override
992 public Pager<TaxonBase> findTaxaByName(Class<? extends TaxonBase> clazz, String uninomial, String infragenericEpithet, String specificEpithet, String infraspecificEpithet, Rank rank, Integer pageSize, Integer pageNumber) {
993 return defaultTaxonService.findTaxaByName(clazz, uninomial, infragenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber);
994 }
995
996 /**
997 * @param clazz
998 * @param uninomial
999 * @param infragenericEpithet
1000 * @param specificEpithet
1001 * @param infraspecificEpithet
1002 * @param rank
1003 * @param pageSize
1004 * @param pageNumber
1005 * @return
1006 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
1007 */
1008 @Override
1009 public List<TaxonBase> listTaxaByName(Class<? extends TaxonBase> clazz, String uninomial, String infragenericEpithet, String specificEpithet, String infraspecificEpithet, Rank rank, Integer pageSize, Integer pageNumber) {
1010 return defaultTaxonService.listTaxaByName(clazz, uninomial, infragenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber);
1011 }
1012
1013 /**
1014 * @param configurator
1015 * @return
1016 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNames(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1017 */
1018 @Override
1019 public Pager<IdentifiableEntity> findTaxaAndNames(IFindTaxaAndNamesConfigurator configurator) {
1020 return defaultTaxonService.findTaxaAndNames(configurator);
1021 }
1022
1023 /**
1024 * @param queryString
1025 * @param classification
1026 * @param languages
1027 * @param highlightFragments
1028 * @param pageSize
1029 * @param pageNumber
1030 * @param orderHints
1031 * @param propertyPaths
1032 * @return
1033 * @throws CorruptIndexException
1034 * @throws IOException
1035 * @throws ParseException
1036 * @throws LuceneMultiSearchException
1037 * @deprecated
1038 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByEverythingFullText(java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1039 */
1040 @Deprecated
1041 @Override
1042 public Pager<SearchResult<TaxonBase>> findByEverythingFullText(String queryString, Classification classification, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws CorruptIndexException, IOException, ParseException, LuceneMultiSearchException {
1043 return defaultTaxonService.findByEverythingFullText(queryString, classification, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths);
1044 }
1045
1046 /**
1047 * @param clazz
1048 * @param queryString
1049 * @param classification
1050 * @param languages
1051 * @param highlightFragments
1052 * @param pageSize
1053 * @param pageNumber
1054 * @param orderHints
1055 * @param propertyPaths
1056 * @return
1057 * @throws CorruptIndexException
1058 * @throws IOException
1059 * @throws ParseException
1060 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1061 */
1062 @Override
1063 public Pager<SearchResult<TaxonBase>> findByFullText(Class<? extends TaxonBase> clazz, String queryString, Classification classification, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws CorruptIndexException, IOException, ParseException {
1064 return defaultTaxonService.findByFullText(clazz, queryString, classification, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths);
1065 }
1066
1067 /**
1068 * @param areaFilter
1069 * @param statusFilter
1070 * @param classification
1071 * @param pageSize
1072 * @param pageNumber
1073 * @param orderHints
1074 * @param propertyPaths
1075 * @return
1076 * @throws IOException
1077 * @throws ParseException
1078 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDistribution(java.util.List, java.util.List, eu.etaxonomy.cdm.model.taxon.Classification, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1079 */
1080 @Override
1081 public Pager<SearchResult<TaxonBase>> findByDistribution(List<NamedArea> areaFilter, List<PresenceAbsenceTermBase<?>> statusFilter, Classification classification, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws IOException, ParseException {
1082 return defaultTaxonService.findByDistribution(areaFilter, statusFilter, classification, pageSize, pageNumber, orderHints, propertyPaths);
1083 }
1084
1085 /**
1086 * @param searchModes
1087 * @param queryString
1088 * @param classification
1089 * @param namedAreas
1090 * @param distributionStatus
1091 * @param languages
1092 * @param highlightFragments
1093 * @param pageSize
1094 * @param pageNumber
1095 * @param orderHints
1096 * @param propertyPaths
1097 * @return
1098 * @throws CorruptIndexException
1099 * @throws IOException
1100 * @throws ParseException
1101 * @throws LuceneMultiSearchException
1102 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesByFullText(java.util.EnumSet, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.Set, java.util.Set, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1103 */
1104 @Override
1105 public Pager<SearchResult<TaxonBase>> findTaxaAndNamesByFullText(EnumSet<TaxaAndNamesSearchMode> searchModes, String queryString, Classification classification, Set<NamedArea> namedAreas, Set<PresenceAbsenceTermBase<?>> distributionStatus, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws CorruptIndexException, IOException, ParseException, LuceneMultiSearchException {
1106 return defaultTaxonService.findTaxaAndNamesByFullText(searchModes, queryString, classification, namedAreas, distributionStatus, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths);
1107 }
1108
1109 /**
1110 * @param clazz
1111 * @param queryString
1112 * @param classification
1113 * @param features
1114 * @param languages
1115 * @param highlightFragments
1116 * @param pageSize
1117 * @param pageNumber
1118 * @param orderHints
1119 * @param propertyPaths
1120 * @return
1121 * @throws CorruptIndexException
1122 * @throws IOException
1123 * @throws ParseException
1124 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDescriptionElementFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1125 */
1126 @Override
1127 public Pager<SearchResult<TaxonBase>> findByDescriptionElementFullText(Class<? extends DescriptionElementBase> clazz, String queryString, Classification classification, List<Feature> features, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws CorruptIndexException, IOException, ParseException {
1128 return defaultTaxonService.findByDescriptionElementFullText(clazz, queryString, classification, features, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths);
1129 }
1130
1131 /**
1132 * @param taxon
1133 * @param size
1134 * @param height
1135 * @param widthOrDuration
1136 * @param mimeTypes
1137 * @return
1138 * @deprecated
1139 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllMedia(eu.etaxonomy.cdm.model.taxon.Taxon, int, int, int, java.lang.String[])
1140 */
1141 @Deprecated
1142 @Override
1143 public List<MediaRepresentation> getAllMedia(Taxon taxon, int size, int height, int widthOrDuration, String[] mimeTypes) {
1144 return defaultTaxonService.getAllMedia(taxon, size, height, widthOrDuration, mimeTypes);
1145 }
1146
1147 /**
1148 * @param taxon
1149 * @param includeRelationships
1150 * @param limitToGalleries
1151 * @param propertyPath
1152 * @return
1153 * @deprecated
1154 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxonDescriptionMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, boolean, java.util.List)
1155 */
1156 @Deprecated
1157 @Override
1158 public List<Media> listTaxonDescriptionMedia(Taxon taxon, Set<TaxonRelationshipEdge> includeRelationships, boolean limitToGalleries, List<String> propertyPath) {
1159 return defaultTaxonService.listTaxonDescriptionMedia(taxon, includeRelationships, limitToGalleries, propertyPath);
1160 }
1161
1162 /**
1163 * @param taxon
1164 * @param includeRelationships
1165 * @param limitToGalleries
1166 * @param includeTaxonDescriptions
1167 * @param includeOccurrences
1168 * @param includeTaxonNameDescriptions
1169 * @param propertyPath
1170 * @return
1171 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.util.List)
1172 */
1173 @Override
1174 public List<Media> listMedia(Taxon taxon, Set<TaxonRelationshipEdge> includeRelationships, Boolean limitToGalleries, Boolean includeTaxonDescriptions, Boolean includeOccurrences, Boolean includeTaxonNameDescriptions, List<String> propertyPath) {
1175 return defaultTaxonService.listMedia(taxon, includeRelationships, limitToGalleries, includeTaxonDescriptions, includeOccurrences, includeTaxonNameDescriptions, propertyPath);
1176 }
1177
1178 /**
1179 * @param listOfIDs
1180 * @return
1181 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByID(java.util.Set)
1182 */
1183 @Override
1184 public List<TaxonBase> findTaxaByID(Set<Integer> listOfIDs) {
1185 return defaultTaxonService.findTaxaByID(listOfIDs);
1186 }
1187
1188 /**
1189 * @param uuid
1190 * @param propertyPaths
1191 * @return
1192 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxonByUuid(java.util.UUID, java.util.List)
1193 */
1194 @Override
1195 public TaxonBase findTaxonByUuid(UUID uuid, List<String> propertyPaths) {
1196 return defaultTaxonService.findTaxonByUuid(uuid, propertyPaths);
1197 }
1198
1199 /**
1200 * @return
1201 * @see eu.etaxonomy.cdm.api.service.ITaxonService#countAllRelationships()
1202 */
1203 @Override
1204 public int countAllRelationships() {
1205 return defaultTaxonService.countAllRelationships();
1206 }
1207
1208 /**
1209 * @param propertyPath
1210 * @return
1211 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNames(java.util.List)
1212 */
1213 @Override
1214 public List<TaxonNameBase> findIdenticalTaxonNames(List<String> propertyPath) {
1215 return defaultTaxonService.findIdenticalTaxonNames(propertyPath);
1216 }
1217
1218 /**
1219 * @param propertyPath
1220 * @return
1221 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNameIds(java.util.List)
1222 */
1223 @Override
1224 public List<TaxonNameBase> findIdenticalTaxonNameIds(List<String> propertyPath) {
1225 return defaultTaxonService.findIdenticalTaxonNameIds(propertyPath);
1226 }
1227
1228 /**
1229 * @param name
1230 * @return
1231 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getPhylumName(eu.etaxonomy.cdm.model.name.TaxonNameBase)
1232 */
1233 @Override
1234 public String getPhylumName(TaxonNameBase name) {
1235 return defaultTaxonService.getPhylumName(name);
1236 }
1237
1238 /**
1239 * @param syn
1240 * @return
1241 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym)
1242 */
1243 @Override
1244 public long deleteSynonymRelationships(Synonym syn) {
1245 return defaultTaxonService.deleteSynonymRelationships(syn);
1246 }
1247
1248 /**
1249 * @param taxonBase
1250 * @param type
1251 * @param pageSize
1252 * @param pageNumber
1253 * @param orderHints
1254 * @param propertyPaths
1255 * @param direction
1256 * @return
1257 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listSynonymRelationships(eu.etaxonomy.cdm.model.taxon.TaxonBase, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List, eu.etaxonomy.cdm.model.common.RelationshipBase.Direction)
1258 */
1259 @Override
1260 public List<SynonymRelationship> listSynonymRelationships(TaxonBase taxonBase, SynonymRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths, Direction direction) {
1261 return defaultTaxonService.listSynonymRelationships(taxonBase, type, pageSize, pageNumber, orderHints, propertyPaths, direction);
1262 }
1263
1264 /**
1265 * @param taxonName
1266 * @return
1267 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(java.lang.String)
1268 */
1269 @Override
1270 public Taxon findBestMatchingTaxon(String taxonName) {
1271 return defaultTaxonService.findBestMatchingTaxon(taxonName);
1272 }
1273
1274 /**
1275 * @param config
1276 * @return
1277 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
1278 */
1279 @Override
1280 public Taxon findBestMatchingTaxon(MatchingTaxonConfigurator config) {
1281 return defaultTaxonService.findBestMatchingTaxon(config);
1282 }
1283
1284 /**
1285 * @param taxonName
1286 * @return
1287 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingSynonym(java.lang.String)
1288 */
1289 @Override
1290 public Synonym findBestMatchingSynonym(String taxonName) {
1291 return defaultTaxonService.findBestMatchingSynonym(taxonName);
1292 }
1293
1294 /**
1295 * @return
1296 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheTaxon()
1297 */
1298 @Override
1299 public List<UuidAndTitleCache<TaxonBase>> getUuidAndTitleCacheTaxon() {
1300 return defaultTaxonService.getUuidAndTitleCacheTaxon();
1301 }
1302
1303 /**
1304 * @return
1305 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheSynonym()
1306 */
1307 @Override
1308 public List<UuidAndTitleCache<TaxonBase>> getUuidAndTitleCacheSynonym() {
1309 return defaultTaxonService.getUuidAndTitleCacheSynonym();
1310 }
1311
1312 /**
1313 * @param configurator
1314 * @return
1315 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesForEditor(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1316 */
1317 @Override
1318 public List<UuidAndTitleCache<IdentifiableEntity>> findTaxaAndNamesForEditor(IFindTaxaAndNamesConfigurator configurator) {
1319 return defaultTaxonService.findTaxaAndNamesForEditor(configurator);
1320 }
1321
1322 /**
1323 * @param taxon
1324 * @param tree
1325 * @param type
1326 * @param doWithMisappliedNames
1327 * @return
1328 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, boolean)
1329 */
1330 @Override
1331 public List<Synonym> createInferredSynonyms(Taxon taxon, Classification tree, SynonymRelationshipType type, boolean doWithMisappliedNames) {
1332 return defaultTaxonService.createInferredSynonyms(taxon, tree, type, doWithMisappliedNames);
1333 }
1334
1335 /**
1336 * @param taxon
1337 * @param tree
1338 * @param doWithMisappliedNames
1339 * @return
1340 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createAllInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, boolean)
1341 */
1342 @Override
1343 public List<Synonym> createAllInferredSynonyms(Taxon taxon, Classification tree, boolean doWithMisappliedNames) {
1344 return defaultTaxonService.createAllInferredSynonyms(taxon, tree, doWithMisappliedNames);
1345 }
1346
1347 @Override
1348 public DeleteResult deleteSynonym(Synonym arg0, SynonymDeletionConfigurator arg1) {
1349 return defaultTaxonService.deleteSynonym(arg0, arg1);
1350 }
1351
1352 @Override
1353 public DeleteResult deleteSynonym(Synonym arg0, Taxon arg1, SynonymDeletionConfigurator arg2) {
1354 return defaultTaxonService.deleteSynonym(arg0, arg1, arg2);
1355 }
1356
1357 @Override
1358 public DeleteResult deleteTaxon(Taxon arg0, TaxonDeletionConfigurator arg1, Classification arg2) {
1359 return defaultTaxonService.deleteTaxon(arg0, arg1, arg2);
1360 }
1361
1362 @Override
1363 public List<List<Synonym>> getSynonymsByHomotypicGroup(Taxon taxon, List<String> propertyPaths) {
1364 return defaultTaxonService.getSynonymsByHomotypicGroup(taxon, propertyPaths);
1365 }
1366
1367 @Override
1368 public Synonym changeRelatedTaxonToSynonym(Taxon fromTaxon, Taxon toTaxon,
1369 TaxonRelationshipType oldRelationshipType,
1370 SynonymRelationshipType synonymRelationshipType)
1371 throws DataChangeNoRollbackException {
1372
1373 return defaultTaxonService.changeRelatedTaxonToSynonym(fromTaxon, toTaxon, oldRelationshipType, synonymRelationshipType);
1374 }
1375
1376 /* (non-Javadoc)
1377 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1378 */
1379 @Override
1380 public Pager<Taxon> pageAcceptedTaxaFor(UUID synonymUuid, UUID classificationUuid, Integer pageSize,
1381 Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
1382 return defaultTaxonService.pageAcceptedTaxaFor(synonymUuid, classificationUuid, pageSize, pageNumber, orderHints, propertyPaths);
1383 }
1384
1385 /* (non-Javadoc)
1386 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1387 */
1388 @Override
1389 public List<Taxon> listAcceptedTaxaFor(UUID synonymUuid, UUID classificationUuid, Integer pageSize,
1390 Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
1391 return defaultTaxonService.listAcceptedTaxaFor(synonymUuid, classificationUuid, pageSize, pageNumber, orderHints, propertyPaths);
1392 }
1393
1394 @Override
1395 public List<String> isDeletable(TaxonBase object,
1396 DeleteConfiguratorBase config) {
1397 // TODO Auto-generated method stub
1398 return null;
1399 }
1400
1401 @Override
1402 public IncludedTaxaDTO listIncludedTaxa(UUID taxonUuid,
1403 IncludedTaxonConfiguration configuration) {
1404 // TODO Auto-generated method stub
1405 return null;
1406 }
1407
1408 @Override
1409 public TaxonBase findWithoutFlush(UUID uuid) {
1410 return defaultTaxonService.findWithoutFlush(uuid);
1411 }
1412
1413 /* (non-Javadoc)
1414 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
1415 */
1416 @Override
1417 public List<TaxonBase> findTaxaByName(MatchingTaxonConfigurator config) {
1418 return defaultTaxonService.findTaxaByName(config);
1419 }
1420
1421
1422
1423
1424
1425
1426 }