eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SequenceGeneralDetailElement.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2013 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10 package eu.etaxonomy.taxeditor.ui.section.occurrence.dna;
  11
  12 import java.net.URI;
  13 import java.net.URISyntaxException;
  14
  15 import org.eclipse.swt.widgets.Text;
  16
  17 import eu.etaxonomy.cdm.model.common.DefinedTerm;
  18 import eu.etaxonomy.cdm.model.common.TermType;
  19 import eu.etaxonomy.cdm.model.molecular.Sequence;
  20 import eu.etaxonomy.cdm.model.molecular.SequenceString;
  21 import eu.etaxonomy.taxeditor.preference.Resources;
  22 import eu.etaxonomy.taxeditor.ui.combo.TermComboElement;
  23 import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory;
  24 import eu.etaxonomy.taxeditor.ui.element.ICdmFormElement;
  25 import eu.etaxonomy.taxeditor.ui.element.TextWithLabelElement;
  26 import eu.etaxonomy.taxeditor.ui.element.UriWithLabelElement;
  27 import eu.etaxonomy.taxeditor.ui.section.AbstractCdmDetailElement;
  28
  29 /**
  30  * @author pplitzner
  31  * @date 19.12.2013
  32  *
  33  */
  34 public class SequenceGeneralDetailElement extends AbstractCdmDetailElement<Sequence> {
  35
  36     private TermComboElement<DefinedTerm> comboMarker;
  37     private TextWithLabelElement textConsensusSequence;
  38     private TextWithLabelElement textGeneticAccessNo;
  39     private UriWithLabelElement textNCBIUri;
  40     private UriWithLabelElement textENAUri;
  41     private UriWithLabelElement textDDBJUri;
  42     private TextWithLabelElement textBoldProcessID;
  43     private UriWithLabelElement textBoldUri;
  44
  45     /**
  46      * @param formFactory
  47      * @param formElement
  48      */
  49     public SequenceGeneralDetailElement(CdmFormFactory formFactory, ICdmFormElement formElement) {
  50         super(formFactory, formElement);
  51     }
  52
  53     /*
  54      * (non-Javadoc)
  55      *
  56      * @see
  57      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
  58      * (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
  59      */
  60     @Override
  61     protected void createControls(ICdmFormElement formElement, Sequence entity, int style) {
  62         comboMarker = formFactory.createDefinedTermComboElement(TermType.DnaMarker, formElement, "DNA Marker", entity.getDnaMarker(), style);
  63         textConsensusSequence = formFactory.createTextWithLabelElement(formElement, "Consensus Sequence 5'->3'", entity.getConsensusSequence().getString(), style);
  64
  65         URI genBankUri = null;
  66         URI emblUri = null;
  67         URI ddbjUri = null;
  68         URI boldUri = null;
  69         try{
  70             genBankUri = entity.getGenBankUri();
  71             emblUri = entity.getEmblUri();
  72             ddbjUri = entity.getDdbjUri();
  73             boldUri = entity.getBoldUri();
  74         }
  75         catch(URISyntaxException e){
  76
  77         }
  78         textGeneticAccessNo = formFactory.createTextWithLabelElement(formElement, "Genetic Acc. No.", entity.getGeneticAccessionNumber(), style);
  79         textNCBIUri = formFactory.createUriWithLabelElement(formElement, "NCBI URI", genBankUri, style);
  80         ((Text) textNCBIUri.getMainControl()).setEditable(false);
  81         textENAUri = formFactory.createUriWithLabelElement(formElement, "ENA URI", emblUri, style);
  82         ((Text) textENAUri.getMainControl()).setEditable(false);
  83         textDDBJUri = formFactory.createUriWithLabelElement(formElement, "DDBJ URI", ddbjUri, style);
  84         ((Text) textDDBJUri.getMainControl()).setEditable(false);
  85         textBoldProcessID = formFactory.createTextWithLabelElement(formElement, "BOLD Process ID", entity.getBoldProcessId(), style);
  86         textBoldUri = formFactory.createUriWithLabelElement(formElement, "BOLD URI", boldUri, style);
  87         ((Text) textBoldUri.getMainControl()).setEditable(false);
  88         ((Text) textBoldUri.getMainControl()).setToolTipText("Query BOLD");
  89     }
  90
  91     /*
  92      * (non-Javadoc)
  93      *
  94      * @see
  95      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
  96      * .lang.Object)
  97      */
  98     @Override
  99     public void handleEvent(Object eventSource) {
 100         if(eventSource==comboMarker){
 101             getEntity().setDnaMarker(comboMarker.getSelection());
 102         }
 103         else if(eventSource==textConsensusSequence){
 104             SequenceString consensusSequence = getEntity().getConsensusSequence();
 105             if(consensusSequence==null){
 106                 consensusSequence = SequenceString.NewInstance();
 107             }
 108             consensusSequence.setString(textConsensusSequence.getText());
 109             getEntity().setConsensusSequence(consensusSequence);
 110         }
 111         else if(eventSource==textGeneticAccessNo){
 112             textGeneticAccessNo.setBackground(getPersistentBackground());
 113             getEntity().setGeneticAccessionNumber(textGeneticAccessNo.getText());
 114             if(textGeneticAccessNo.getText()!=null && !textGeneticAccessNo.getText().isEmpty()){
 115                 try {
 116                     textNCBIUri.setParsedText(getEntity().getGenBankUri());
 117                     textENAUri.setParsedText(getEntity().getEmblUri());
 118                     textDDBJUri.setParsedText(getEntity().getDdbjUri());
 119                 } catch (URISyntaxException e) {
 120                     textGeneticAccessNo.setBackground(getColor(Resources.COLOR_PARSE_ERROR));
 121                 }
 122             }
 123             else{
 124                 textNCBIUri.setText("");
 125                 textENAUri.setText("");
 126                 textDDBJUri.setText("");
 127             }
 128         }
 129         else if(eventSource==textBoldProcessID){
 130             textBoldProcessID.setBackground(getPersistentBackground());
 131             getEntity().setBoldProcessId(textBoldProcessID.getText());
 132             if(textBoldProcessID.getText()!=null && !textBoldProcessID.getText().isEmpty()){
 133                 try {
 134                     textBoldUri.setParsedText(getEntity().getBoldUri());
 135                 } catch (URISyntaxException e) {
 136                     textBoldProcessID.setBackground(getColor(Resources.COLOR_PARSE_ERROR));
 137                 }
 138             }
 139             else{
 140                 textBoldUri.setText("");
 141             }
 142         }
 143     }
 144
 145 }