3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.view
.derivateSearch
;
12 import java
.util
.List
;
14 import java
.util
.UUID
;
16 import org
.eclipse
.jface
.viewers
.ColumnLabelProvider
;
17 import org
.eclipse
.jface
.viewers
.TreeNode
;
18 import org
.eclipse
.swt
.graphics
.Image
;
19 import org
.hibernate
.LazyInitializationException
;
21 import eu
.etaxonomy
.cdm
.api
.conversation
.ConversationHolder
;
22 import eu
.etaxonomy
.cdm
.api
.service
.IOccurrenceService
;
23 import eu
.etaxonomy
.cdm
.model
.common
.DefinedTerm
;
24 import eu
.etaxonomy
.cdm
.model
.molecular
.DnaSample
;
25 import eu
.etaxonomy
.cdm
.model
.molecular
.Sequence
;
26 import eu
.etaxonomy
.cdm
.model
.molecular
.SingleRead
;
27 import eu
.etaxonomy
.cdm
.model
.occurrence
.Collection
;
28 import eu
.etaxonomy
.cdm
.model
.occurrence
.DerivedUnit
;
29 import eu
.etaxonomy
.cdm
.model
.occurrence
.FieldUnit
;
30 import eu
.etaxonomy
.cdm
.model
.occurrence
.GatheringEvent
;
31 import eu
.etaxonomy
.cdm
.model
.occurrence
.MediaSpecimen
;
32 import eu
.etaxonomy
.cdm
.model
.occurrence
.SpecimenOrObservationBase
;
33 import eu
.etaxonomy
.cdm
.model
.occurrence
.SpecimenOrObservationType
;
34 import eu
.etaxonomy
.taxeditor
.model
.ImageResources
;
35 import eu
.etaxonomy
.taxeditor
.store
.CdmStore
;
38 * Label provider for the views to show {@link SpecimenOrObservationBase}s.<br>
40 * <b>Note:</b> If you use this label provider you need to assure that you
41 * created a {@link ConversationHolder} resp. have an open session because
42 * the labels are generated from various fields of the derivate hierarchy which
43 * are lazy loaded and could therefore throw a {@link LazyInitializationException}.<br>
44 * Use <b>{@link #setConversation(ConversationHolder)}</b> to assign the session to this provider.
46 public class DerivateLabelProvider
extends ColumnLabelProvider
{
48 private Set
<SingleRead
> multiLinkSingleReads
;
50 private ConversationHolder conversation
;
52 private static DefinedTerm photoTerm
= null;
53 private static DefinedTerm drawingTerm
= null;
54 private static DefinedTerm specimenScanTerm
= null;
55 private static DefinedTerm detailImageTerm
= null;
57 private static void initializeTerms() {
58 List
<DefinedTerm
> preferredTerms
= CdmStore
.getTermManager().getPreferredTerms(DefinedTerm
.class);
59 for (DefinedTerm definedTerm
: preferredTerms
) {
60 if(definedTerm
.getUuid().equals(UUID
.fromString("c5c59c42-f254-471e-96c6-09f459f7c903"))){
61 photoTerm
= definedTerm
;
63 else if(definedTerm
.getUuid().equals(UUID
.fromString("669b0409-4aa4-4695-aae4-a95ed27bad4c"))){
64 drawingTerm
= definedTerm
;
66 else if(definedTerm
.getUuid().equals(UUID
.fromString("acda15be-c0e2-4ea8-8783-b9b0c4ad7f03"))){
67 specimenScanTerm
= definedTerm
;
69 else if(definedTerm
.getUuid().equals(UUID
.fromString("31eb8d02-bf5d-437c-bcc6-87a626445f34"))){
70 detailImageTerm
= definedTerm
;
75 public static DefinedTerm
getLivingPlantPhotoTerm(){
82 public static DefinedTerm
getArtworkTerm(){
83 if(drawingTerm
==null){
89 public static DefinedTerm
getSpecimenScanTerm(){
90 if(specimenScanTerm
==null){
93 return specimenScanTerm
;
96 public static DefinedTerm
getDetailImageTerm(){
97 if(detailImageTerm
==null){
100 return detailImageTerm
;
106 public String
getText(Object element
) {
107 return getDerivateText(element
);
112 public String
getToolTipText(Object element
) {
113 return getDerivateText(element
);
117 * @param conversation the conversation to set
119 public void setConversation(ConversationHolder conversation
) {
120 this.conversation
= conversation
;
128 public String
getDerivateText(Object element
){
129 if(element
instanceof TreeNode
){
130 //unwrap specimen from TreeNode
131 element
= ((TreeNode
) element
).getValue();
137 if(element
instanceof FieldUnit
){
138 FieldUnit fieldUnit
= (FieldUnit
)element
;
139 if(fieldUnit
.getGatheringEvent()!=null){
140 GatheringEvent gatheringEvent
= fieldUnit
.getGatheringEvent();
141 if(!conversation
.getSession().contains(gatheringEvent
)){
142 fieldUnit
= (FieldUnit
) CdmStore
.getService(IOccurrenceService
.class).load(fieldUnit
.getUuid());
143 gatheringEvent
= fieldUnit
.getGatheringEvent();
145 label
+= gatheringEvent
.getCountry()!=null?gatheringEvent
.getCountry().getLabel()+", ":"";
146 label
+= gatheringEvent
.getLocality()!=null?gatheringEvent
.getLocality().getText()+", ":"";
147 label
+= gatheringEvent
.getGatheringDate()!=null?gatheringEvent
.getGatheringDate()+", ":"";
148 label
+= gatheringEvent
.getCollector()!=null?gatheringEvent
.getCollector()+", ":"";
150 label
+= fieldUnit
.getFieldNumber()!=null?fieldUnit
.getFieldNumber():"";
152 else if(element
instanceof MediaSpecimen
){
153 MediaSpecimen mediaSpecimen
= (MediaSpecimen
)element
;
154 if(mediaSpecimen
.getMediaSpecimen()!=null){
155 label
+= mediaSpecimen
.getMediaSpecimen().getTitle()!=null?mediaSpecimen
.getMediaSpecimen().getTitle().getText()+", ":"[no motif]";
156 label
+= mediaSpecimen
.getMediaSpecimen().getArtist()!=null?mediaSpecimen
.getMediaSpecimen().getArtist()+", ":"";
158 label
+= mediaSpecimen
.getAccessionNumber()!=null?mediaSpecimen
.getAccessionNumber()+", ":"";
159 Collection collection
= mediaSpecimen
.getCollection();
160 if(collection
!=null){
161 label
+= collection
.getName()!=null?collection
.getName()+" ":"";
164 else if(element
instanceof DnaSample
165 || (element
instanceof DerivedUnit
166 && ((SpecimenOrObservationBase
<?
>) element
).getRecordBasis()==SpecimenOrObservationType
.DnaSample
)){
168 label
+= element
.toString();
171 else if(element
instanceof DerivedUnit
){
172 DerivedUnit derivedUnit
= (DerivedUnit
)element
;
173 if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.PreservedSpecimen
){
174 java
.util
.Collection
<FieldUnit
> fieldUnits
= CdmStore
.getService(IOccurrenceService
.class).getFieldUnits(derivedUnit
.getUuid());
175 if(fieldUnits
!=null && !fieldUnits
.isEmpty()){
176 FieldUnit fieldUnit
= fieldUnits
.iterator().next();
177 GatheringEvent gatheringEvent
= fieldUnit
.getGatheringEvent();
178 if(gatheringEvent
!=null){
179 label
+= gatheringEvent
.getCollector()!=null?gatheringEvent
.getCollector()+", ":"";
181 label
+= fieldUnit
.getFieldNumber()!=null?fieldUnit
.getFieldNumber()+", ":"";
183 Collection collection
= derivedUnit
.getCollection();
184 if(collection
!=null){
185 label
+= collection
.getName()!=null?collection
.getName()+" ":"";
186 label
+= collection
.getCode()!=null?
"("+collection
.getCode()+"), ":"";
188 label
+= derivedUnit
.getAccessionNumber()!=null?derivedUnit
.getAccessionNumber()+", ":"";
189 label
+= derivedUnit
.getBarcode()!=null?derivedUnit
.getBarcode():"";
191 else if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.TissueSample
){
193 // kindofTissue + SampleDesignation
196 else if(element
instanceof Sequence
){
197 Sequence sequence
= (Sequence
)element
;
198 label
+= "SampleDesignation?"+", ";
199 label
+= sequence
.getDnaMarker()!=null?sequence
.getDnaMarker():"";
201 else if(element
instanceof SingleRead
){
202 SingleRead singleRead
= (SingleRead
)element
;
203 label
+= singleRead
.getPrimer()!=null?singleRead
.getPrimer().getLabel()+", ":"";
206 else if(element
instanceof SpecimenOrObservationBase
){
207 SpecimenOrObservationBase
<?
> derivate
= (SpecimenOrObservationBase
<?
>) element
;
208 SpecimenOrObservationType type
= derivate
.getRecordBasis();
209 return derivate
.getTitleCache() + (type
!=null?
" ["+type
.toString()+"]":"");
212 label
= element
.toString();
215 else if(label
.endsWith(", ")){
216 label
= label
.substring(0, label
.length()-2);
222 * @see org.eclipse.jface.viewers.ColumnLabelProvider#getImage(java.lang.Object)
225 public Image
getImage(Object element
) {
226 if(element
instanceof TreeNode
){
227 element
= ((TreeNode
) element
).getValue();
229 if(element
instanceof FieldUnit
){
230 return ImageResources
.getImage(ImageResources
.FIELD_UNIT
);
232 else if(element
instanceof DerivedUnit
){
233 DerivedUnit derivedUnit
= (DerivedUnit
)element
;
234 if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.FieldUnit
){
235 return ImageResources
.getImage(ImageResources
.FIELD_UNIT
);
237 else if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.DnaSample
){
238 return ImageResources
.getImage(ImageResources
.DNA_SAMPLE_DERIVATE
);
240 else if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.TissueSample
){
241 return ImageResources
.getImage(ImageResources
.TISSUE_SAMPLE_DERIVATE
);
243 else if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.PreservedSpecimen
){
244 return ImageResources
.getImage(ImageResources
.SPECIMEN_DERIVATE
);
246 else if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.Media
){
247 if(derivedUnit
.getKindOfUnit()!=null){
248 if(derivedUnit
.getKindOfUnit().equals(getArtworkTerm())){
249 return ImageResources
.getImage(ImageResources
.ARTWORK_DERIVATE
);
251 else if(derivedUnit
.getKindOfUnit().equals(getLivingPlantPhotoTerm())){
252 return ImageResources
.getImage(ImageResources
.LIVING_PLANT_PHOTO_DERIVATE
);
254 else if(derivedUnit
.getKindOfUnit().equals(getSpecimenScanTerm())){
255 return ImageResources
.getImage(ImageResources
.SPECIMEN_SCAN_DERIVATE
);
257 else if(derivedUnit
.getKindOfUnit().equals(getDetailImageTerm())){
258 return ImageResources
.getImage(ImageResources
.DETAIL_IMAGE_DERIVATE
);
263 else if(element
instanceof Sequence
){
264 return ImageResources
.getImage(ImageResources
.SEQUENCE_DERIVATE
);
267 else if(element
instanceof SingleRead
){
268 if(multiLinkSingleReads
.contains(element
)){
269 return ImageResources
.getImage(ImageResources
.SINGLE_READ_DERIVATE_MULTILINK
);
272 return ImageResources
.getImage(ImageResources
.SINGLE_READ_DERIVATE
);
275 return super.getImage(element
);
279 * @param multiLinkSingleReads2
281 public void setMultiLinkSingleReads(Set
<SingleRead
> multiLinkSingleReads
) {
282 this.multiLinkSingleReads
= multiLinkSingleReads
;