eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/SequenceGeneralDetailElement.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2013 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10 package eu.etaxonomy.taxeditor.ui.section.occurrence;
  11
  12 import eu.etaxonomy.cdm.model.common.DefinedTerm;
  13 import eu.etaxonomy.cdm.model.molecular.Sequence;
  14 import eu.etaxonomy.cdm.model.reference.Reference;
  15 import eu.etaxonomy.taxeditor.ui.campanula.compatibility.ICdmFormElement;
  16 import eu.etaxonomy.taxeditor.ui.combo.TermComboElement;
  17 import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory;
  18 import eu.etaxonomy.taxeditor.ui.element.TextWithLabelElement;
  19 import eu.etaxonomy.taxeditor.ui.section.AbstractCdmDetailElement;
  20 import eu.etaxonomy.taxeditor.ui.selection.EntitySelectionElement;
  21
  22 /**
  23  * @author pplitzner
  24  * @date 19.12.2013
  25  *
  26  */
  27 public class SequenceGeneralDetailElement extends AbstractCdmDetailElement<Sequence> {
  28
  29     private TermComboElement<DefinedTerm> comboMarker;
  30     private TextWithLabelElement textContigFile;
  31     private TextWithLabelElement textConsensusSequence;
  32     private TextWithLabelElement textConsensusSequenceLength;
  33     private TextWithLabelElement textBarcodeSequence;
  34     private TextWithLabelElement textReferenceCitation;
  35     private EntitySelectionElement<Reference> selectionReference;
  36     private TextWithLabelElement textGeneticAccessNo;
  37     private TextWithLabelElement textBOLDProcessID;
  38     private TextWithLabelElement textBOLDLink;
  39
  40     /**
  41      * @param formFactory
  42      * @param formElement
  43      */
  44     public SequenceGeneralDetailElement(CdmFormFactory formFactory, ICdmFormElement formElement) {
  45         super(formFactory, formElement);
  46     }
  47
  48     /*
  49      * (non-Javadoc)
  50      *
  51      * @see
  52      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
  53      * (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
  54      */
  55     @Override
  56     protected void createControls(ICdmFormElement formElement, Sequence entity, int style) {
  57         comboMarker = formFactory.createTermComboElement(DefinedTerm.class, formElement, "DNA Marker",
  58                 entity.getDnaMarker(),
  59                         style);
  60         textContigFile = formFactory.createTextWithLabelElement(formElement, "Contig File", "XXX", style);
  61         textConsensusSequence = formFactory.createTextWithLabelElement(formElement, "Consensus Sequence 5'->3'", entity.getConsensusSequence().getString(), style);
  62         textConsensusSequenceLength = formFactory.createTextWithLabelElement(formElement, "Consensus Seq. Length", entity.getConsensusSequence().getLength().toString(), style);
  63 //        textBarcodeSequence = formFactory.createTextWithLabelElement(formElement, "Barcode Sequence 5'->3'", entity.getBarcodeSequencePart().getString(), style);
  64
  65         selectionReference = formFactory
  66                 .createSelectionElement(Reference.class,
  67                         getConversationHolder(), formElement, "Reference",
  68                         null,
  69                         EntitySelectionElement.ALL, style);
  70         textGeneticAccessNo = formFactory.createTextWithLabelElement(formElement, "Genetic Acc. No.", entity.getGeneticAccessionNumber(), style);
  71         textBOLDProcessID = formFactory.createTextWithLabelElement(formElement, "BOLD Process ID", entity.getBoldProcessId(), style);
  72 //        textBOLDLink = formFactory.createTextWithLabelElement(formElement, "BOLD URI", entity.getBoldUri().toString(), style);
  73     }
  74
  75     /*
  76      * (non-Javadoc)
  77      *
  78      * @see
  79      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
  80      * .lang.Object)
  81      */
  82     @Override
  83     public void handleEvent(Object eventSource) {
  84     }
  85
  86 }