remove logging for DerivedUnitFacadeNotSupportedException as it is handled #3846
[taxeditor.git] / eu.etaxonomy.taxeditor.store / src / main / java / eu / etaxonomy / taxeditor / view / detail / DetailsViewer.java
1
2 // $Id$
3 /**
4 * Copyright (C) 2011 EDIT
5 * European Distributed Institute of Taxonomy
6 * http://www.e-taxonomy.eu
7 *
8 * The contents of this file are subject to the Mozilla Public License Version 1.1
9 * See LICENSE.TXT at the top of this package for the full license terms.
10 */
11
12 package eu.etaxonomy.taxeditor.view.detail;
13
14 import java.util.Set;
15
16 import org.eclipse.jface.viewers.ISelection;
17 import org.eclipse.jface.viewers.SelectionChangedEvent;
18 import org.eclipse.jface.viewers.TreeNode;
19 import org.eclipse.swt.SWT;
20 import org.eclipse.swt.widgets.Composite;
21 import org.eclipse.ui.forms.widgets.ExpandableComposite;
22
23 import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
24 import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
25 import eu.etaxonomy.cdm.api.service.ITermService;
26 import eu.etaxonomy.cdm.ext.occurrence.gbif.GbifResponse;
27 import eu.etaxonomy.cdm.model.agent.Person;
28 import eu.etaxonomy.cdm.model.agent.Team;
29 import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
30 import eu.etaxonomy.cdm.model.common.DefinedTermBase;
31 import eu.etaxonomy.cdm.model.common.Group;
32 import eu.etaxonomy.cdm.model.common.Marker;
33 import eu.etaxonomy.cdm.model.common.MarkerType;
34 import eu.etaxonomy.cdm.model.common.TermVocabulary;
35 import eu.etaxonomy.cdm.model.common.User;
36 import eu.etaxonomy.cdm.model.description.CategoricalData;
37 import eu.etaxonomy.cdm.model.description.DescriptionBase;
38 import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
39 import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
40 import eu.etaxonomy.cdm.model.description.SpecimenDescription;
41 import eu.etaxonomy.cdm.model.media.Media;
42 import eu.etaxonomy.cdm.model.molecular.Amplification;
43 import eu.etaxonomy.cdm.model.molecular.DnaSample;
44 import eu.etaxonomy.cdm.model.molecular.Sequence;
45 import eu.etaxonomy.cdm.model.molecular.SingleRead;
46 import eu.etaxonomy.cdm.model.name.NonViralName;
47 import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
48 import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
49 import eu.etaxonomy.cdm.model.occurrence.MediaSpecimen;
50 import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
51 import eu.etaxonomy.cdm.model.reference.Reference;
52 import eu.etaxonomy.cdm.model.taxon.TaxonBase;
53 import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
54 import eu.etaxonomy.taxeditor.editor.UsageTermCollection;
55 import eu.etaxonomy.taxeditor.model.FeatureNodeContainer;
56 import eu.etaxonomy.taxeditor.model.MessagingUtils;
57 import eu.etaxonomy.taxeditor.model.PolytomousKeyRelationship;
58 import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
59 import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
60 import eu.etaxonomy.taxeditor.store.CdmStore;
61 import eu.etaxonomy.taxeditor.ui.element.AbstractFormSection;
62 import eu.etaxonomy.taxeditor.ui.element.RootElement;
63 import eu.etaxonomy.taxeditor.ui.section.agent.PersonDetailSection;
64 import eu.etaxonomy.taxeditor.ui.section.agent.TeamDetailSection;
65 import eu.etaxonomy.taxeditor.ui.section.agent.TeamOrPersonBaseDetailSection;
66 import eu.etaxonomy.taxeditor.ui.section.common.ReferencedEntityDetailSection;
67 import eu.etaxonomy.taxeditor.ui.section.description.DescribedSpecimenSection;
68 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionDetailSection;
69 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementDetailSection;
70 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementMediaSection;
71 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementSourceSection;
72 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionSourceSection;
73 import eu.etaxonomy.taxeditor.ui.section.description.MediaDetailsSection;
74 import eu.etaxonomy.taxeditor.ui.section.description.NaturalLanguageSection;
75 import eu.etaxonomy.taxeditor.ui.section.description.ScopeSection;
76 import eu.etaxonomy.taxeditor.ui.section.feature.FeatureDistributionDetailSection;
77 import eu.etaxonomy.taxeditor.ui.section.grantedAuthority.GrantedAuthorityDetailSection;
78 import eu.etaxonomy.taxeditor.ui.section.group.GroupDetailSection;
79 import eu.etaxonomy.taxeditor.ui.section.group.MemberDetailSection;
80 import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyDetailSection;
81 import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyNodeDetailSection;
82 import eu.etaxonomy.taxeditor.ui.section.key.TaxonomicScopeSection;
83 import eu.etaxonomy.taxeditor.ui.section.name.NameRelationshipDetailSection;
84 import eu.etaxonomy.taxeditor.ui.section.name.NomenclaturalStatusSection;
85 import eu.etaxonomy.taxeditor.ui.section.name.NonViralNameDetailSection;
86 import eu.etaxonomy.taxeditor.ui.section.name.ProtologueSection;
87 import eu.etaxonomy.taxeditor.ui.section.name.TypeDesignationSection;
88 import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitBaseDetailSection;
89 import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitGeneralDetailSection;
90 import eu.etaxonomy.taxeditor.ui.section.occurrence.DeterminationDetailSection;
91 import eu.etaxonomy.taxeditor.ui.section.occurrence.EmptySection;
92 import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitDetailSection;
93 import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitGeneralDetailSection;
94 import eu.etaxonomy.taxeditor.ui.section.occurrence.GatheringEventDetailSection;
95 import eu.etaxonomy.taxeditor.ui.section.occurrence.OriginalLabelDataSection;
96 import eu.etaxonomy.taxeditor.ui.section.occurrence.derivedUnit.PreservedSpecimenDetailSection;
97 import eu.etaxonomy.taxeditor.ui.section.occurrence.derivedUnit.PreservedSpecimenDeterminationDetailSection;
98 import eu.etaxonomy.taxeditor.ui.section.occurrence.derivedUnit.PreservedSpecimenGeneralDetailSection;
99 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationCloningDetailSection;
100 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationGelPhotoCollectionDetailSection;
101 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationGeneralDetailSection;
102 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationPrimerDetailSection;
103 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaQualityDetailSection;
104 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSampleGeneralDetailSection;
105 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceContigFileCollectionDetailSection;
106 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceGeneralDetailSection;
107 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceReferenceCollectionDetailSection;
108 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadGeneralDetailSection;
109 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadPherogramCollectionDetailSection;
110 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.TissueSampleGeneralDetailSection;
111 import eu.etaxonomy.taxeditor.ui.section.occurrence.media.LivingPlantPhotoGeneralDetailSection;
112 import eu.etaxonomy.taxeditor.ui.section.occurrence.media.MediaSpecimenGeneralDetailSection;
113 import eu.etaxonomy.taxeditor.ui.section.occurrence.media.SpecimenScanGeneralDetailSection;
114 import eu.etaxonomy.taxeditor.ui.section.reference.NomenclaturalReferenceDetailSection;
115 import eu.etaxonomy.taxeditor.ui.section.reference.ReferenceDetailSection;
116 import eu.etaxonomy.taxeditor.ui.section.taxon.ParsingMessagesSection;
117 import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonBaseDetailSection;
118 import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonRelationshipDetailSection;
119 import eu.etaxonomy.taxeditor.ui.section.user.GroupsByUserDetailSection;
120 import eu.etaxonomy.taxeditor.ui.section.user.UserDetailSection;
121 import eu.etaxonomy.taxeditor.ui.section.userecords.UseRecordDetailSection;
122 import eu.etaxonomy.taxeditor.ui.section.vocabulary.TermVocabularyDetailSection;
123 import eu.etaxonomy.taxeditor.view.AbstractCdmDataViewer;
124 import eu.etaxonomy.taxeditor.view.AbstractCdmViewPart;
125
126 /**
127 *
128 * The DetailsViewer handles the content of the details view (
129 * {@link DetailsViewPart}).<br>
130 * Depending on the type of the selected element the section of the details view
131 * are created.
132 *
133 * @author n.hoffmann
134 * @created Feb 12, 2010
135 * @version 1.0
136 */
137 public class DetailsViewer extends AbstractCdmDataViewer {
138
139 private ISelection selection;
140
141 /**
142 * <p>
143 * Constructor for DetailsViewer.
144 * </p>
145 *
146 * @param parent
147 * a {@link org.eclipse.swt.widgets.Composite} object.
148 * @param viewPart
149 * a {@link eu.etaxonomy.taxeditor.view.AbstractCdmViewPart}
150 * object.
151 */
152 public DetailsViewer(Composite parent, AbstractCdmViewPart viewPart) {
153 super(parent, viewPart);
154 }
155
156 // START HACK TO MAKE THE DERIVED UNIT FACADE WORK
157 // since we are getting implementations of DerivedUnitBase from the bulk
158 // editor
159 // and not derived unit facade objects,
160
161 /*
162 * (non-Javadoc)
163 *
164 * @see
165 * eu.etaxonomy.taxeditor.editor.view.AbstractCdmDataViewer#setInput(java
166 * .lang.Object)
167 */
168 @Override
169 public void setInput(Object input) {
170 if(input instanceof TreeNode){
171 input = ((TreeNode) input).getValue();
172 }
173 if(input instanceof GbifResponse){
174 input = ((GbifResponse) input).getDerivedUnitFacade();
175 }
176 if (input.getClass().equals(DerivedUnit.class)) {
177 DerivedUnit derivedUnit = (DerivedUnit)input;
178 try {
179 input = DerivedUnitFacade.NewInstance(derivedUnit,
180 PreferencesUtil.getDerivedUnitConfigurator());
181 } catch (DerivedUnitFacadeNotSupportedException e) {
182 // MessagingUtils.error(getClass(), e); //nothing should happen, later on the Details View will show an according information that it is not possible to open this data
183 }
184 }
185 else if(input instanceof FieldUnit){
186 input = DerivedUnitFacade.NewInstance(SpecimenOrObservationType.FieldUnit, (FieldUnit) input);
187 }
188 super.setInput(input);
189 }
190
191 @Override
192 protected void markViewPartDirty() {
193 if (getInput() instanceof DerivedUnitFacade) {
194 DerivedUnitFacade facade = (DerivedUnitFacade) getInput();
195 if(facade.innerDerivedUnit()!=null){
196 getViewPart().changed(facade.innerDerivedUnit());
197 }
198 else if(facade.innerFieldUnit()!=null){
199 getViewPart().changed(facade.innerFieldUnit());
200 }
201 }
202 else{
203 super.markViewPartDirty();
204 }
205 }
206
207 // END HACK TO MAKE THE DERIVED UNIT FACADE WORK
208
209 /*
210 * (non-Javadoc)
211 *
212 * @see org.eclipse.jface.viewers.Viewer#refresh()
213 */
214 /** {@inheritDoc} */
215 @Override
216 protected void showParts() {
217 // FIXME (CM) : Need to clean out this code.
218 // Too much type checking to decide which detail view to display.
219 // Need to build in a mechanism where navigators / editors are 'aware'
220 // of the corresponding detail viewer.
221 Object input = getInput();
222
223 destroySections();
224 if (input instanceof TaxonBase) {
225 createTaxonSections(rootElement);
226
227 } else if (input instanceof NonViralName) {
228 createNameSections(rootElement);
229
230 } else if (input instanceof Reference) {
231 createReferenceSections(rootElement);
232
233 } else if (input instanceof Team) {
234 createTeamDetailSection(rootElement);
235
236 } else if (input instanceof Person) {
237 createPersonDetailSection(rootElement);
238
239 } else if (input instanceof TeamOrPersonBase) {
240 createTeamOrPersonBaseDetailSection(rootElement);
241
242 } else if (input instanceof DescriptionBase) {
243 if(input instanceof SpecimenDescription){
244 //TODO: add more sections to DetailsView for SpecimenDescription
245 createSpecimenDescriptionSection(rootElement);
246 }
247 else{
248 Set<Marker> descriptionMarkers = ((DescriptionBase) input).getMarkers();
249 MarkerType useMarkertype = (MarkerType) CdmStore.getService(ITermService.class).find(
250 UsageTermCollection.uuidUseMarkerType);
251 Boolean isUseDescription = false;
252 for (Marker marker : descriptionMarkers) {
253 if (marker.getMarkerType().equals(useMarkertype)) {
254 isUseDescription = true;
255 }
256 }
257 if (((DescriptionBase) input).isImageGallery()) {
258 createImageGallerySection(rootElement);
259
260 } else if (isUseDescription) {
261 createUseDescriptionSection(rootElement);
262 } else {
263 createDescriptionSection(rootElement);
264
265 }
266 }
267 } else if (input instanceof DescriptionElementBase) {
268 Set<Marker> descriptionMarkers = ((DescriptionElementBase) input).getInDescription().getMarkers();
269 MarkerType useMarkertype = (MarkerType) CdmStore.getService(ITermService.class).find(
270 UsageTermCollection.uuidUseMarkerType);
271 Boolean isUseDescription = false;
272 for (Marker marker : descriptionMarkers) {
273 if (marker.getMarkerType().equals(useMarkertype)) {
274 isUseDescription = true;
275 }
276 }
277
278 if (isUseDescription == true && input instanceof CategoricalData) {
279 createUseRecordSection(rootElement);
280 } else {
281 createDescriptionElementSection(rootElement);
282 }
283
284 } else if (input instanceof Media) {
285 createMediaElementSection(rootElement);
286
287 } else if (input instanceof DerivedUnitFacade) {
288 if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.FieldUnit){
289 createFieldUnitSection(rootElement);
290 }
291 else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.PreservedSpecimen){
292 createDerivedUnitBaseElementSection(rootElement);
293 }
294 else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.TissueSample){
295 createTissueSampleSection(rootElement);
296 }
297 else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.StillImage){
298 createSpecimenScanSection(rootElement);
299 }
300 else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.StillImage){
301 createLivingPlantPhotoSection(rootElement);
302 }
303 else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.StillImage){
304 createMediaSpecimenSection(rootElement);
305 }
306 else{
307 createDerivedUnitBaseElementSection(rootElement);
308 }
309 } else if (input instanceof DnaSample){
310 createDnaSampleSection(rootElement);
311 } else if (input instanceof MediaSpecimen){
312 createMediaSpecimenSection(rootElement);
313 }
314 else if(input instanceof Amplification){
315 createAmplificationSection(rootElement);
316 }
317 else if(input instanceof Sequence){
318 createSequenceSection(rootElement);
319 }
320 else if(input instanceof SingleRead){
321 createSingleReadSection(rootElement);
322 }
323 else if (input instanceof FeatureNodeContainer) {
324 createFeatureDistributionSection(rootElement);
325
326 }else if ((input instanceof PolytomousKeyNode) || (input instanceof PolytomousKeyRelationship)) {
327 createPolytomousKeyNodeSection(rootElement);
328 } else if (input instanceof User) {
329 createUserSection(rootElement);
330 } else if (input instanceof Group) {
331 createGroupSection(rootElement);
332 } else if (input instanceof TaxonRelationship) {
333 createTaxonRelationshipSection(rootElement);
334 } else if (input instanceof TermVocabulary) {
335 createTermVocabularySection(rootElement);
336 } else if (input instanceof DefinedTermBase) {
337 createDefinedTermSection(rootElement);
338 }
339 else {
340 createEmptySection(rootElement);
341 }
342 layout();
343 }
344
345
346 /**
347 * @param rootElement
348 */
349 private void createEmptySection(RootElement parent) {
350 destroySections();
351
352 EmptySection emptySection = formFactory.createEmptySection(formFactory, parent, SWT.NONE);
353
354 addPart(emptySection);
355 }
356
357 /**
358 * @param rootElement
359 */
360 private void createGroupSection(RootElement parent) {
361 destroySections();
362
363 GroupDetailSection groupDetailSection = formFactory.createGroupDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE| ExpandableComposite.EXPANDED);
364 MemberDetailSection memberDetailSection = formFactory.createMemberDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
365 GrantedAuthorityDetailSection grantedAuthorityDetailSection = formFactory.createGrantedAuthorityDetailSection(getConversationHolder(), parent,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
366
367 addPart(groupDetailSection);
368 addPart(memberDetailSection);
369 addPart(grantedAuthorityDetailSection);
370 }
371
372 /*
373 * (non-Javadoc)
374 *
375 * @see org.eclipse.jface.viewers.Viewer#getSelection()
376 */
377 /** {@inheritDoc} */
378 @Override
379 public ISelection getSelection() {
380 return selection;
381 }
382
383 /*
384 * (non-Javadoc)
385 *
386 * @see
387 * org.eclipse.jface.viewers.Viewer#setSelection(org.eclipse.jface.viewers
388 * .ISelection, boolean)
389 */
390 /** {@inheritDoc} */
391 @Override
392 public void setSelection(ISelection selection, boolean reveal) {
393 this.selection = selection;
394 if(this.selection!=null){
395 SelectionChangedEvent selectionChangedEvent = new SelectionChangedEvent(this, selection);
396 fireSelectionChanged(selectionChangedEvent);
397 }
398 }
399
400 /**
401 * createTaxonSections(RootElement parent)
402 *
403 * @param parent
404 */
405 private void createTaxonSections(RootElement parent) {
406 destroySections();
407
408 TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this,
409 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
410 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
411
412 NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(getConversationHolder(), parent, this,
413 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
414 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
415
416 NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
417 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
418 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
419
420 NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
421 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
422 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
423
424 //TODO RL
425 if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)){
426 ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
427 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
428
429 TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
430 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
431
432 NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
433 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
434
435 addPart(protologSection);
436 addPart(typeDesignationSection);
437 addPart(nameRelationshipSection);
438 }
439
440 ParsingMessagesSection parsingMessagesSection = formFactory.createParsingMessagesSection(getConversationHolder(), parent, this,
441 ExpandableComposite.EXPANDED | ExpandableComposite.EXPANDED);
442
443 addPart(taxonBaseDetailSection);
444 addPart(nonViralNameSection);
445 addPart(nomenclaturalStatusSection);
446 addPart(parsingMessagesSection);
447 addPart(referenceDetailSection);
448 }
449
450 /**
451 * createNameSections
452 *
453 * @param parent
454 */
455 private void createNameSections(RootElement parent) {
456 destroySections();
457 NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(getConversationHolder(), parent, this,
458 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
459 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
460
461 NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
462 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
463 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
464
465 NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
466 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
467 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
468
469 addPart(nonViralNameSection);
470 addPart(nomenclaturalStatusSection);
471 addPart(referenceDetailSection);
472 //TODO RL
473 if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)){
474 ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
475 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
476
477 TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
478 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
479
480 NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
481 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
482 addPart(protologSection);
483 addPart(typeDesignationSection);
484 addPart(nameRelationshipSection);
485 }
486 }
487
488 /**
489 * createReferenceSections
490 *
491 * @param parent
492 */
493 private void createReferenceSections(RootElement parent) {
494 destroySections();
495
496 ReferenceDetailSection referenceDetailSection = formFactory.createReferenceDetailSection(getConversationHolder(), parent, this,
497 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
498
499 addPart(referenceDetailSection);
500 }
501
502 /**
503 * createTeamOrPersonBaseDetailSection
504 *
505 * @param parent
506 */
507 private void createTeamOrPersonBaseDetailSection(RootElement parent) {
508 destroySections();
509 TeamOrPersonBaseDetailSection teamOrPersonBaseDetailSection = formFactory.createTeamOrPersonBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
510
511 addPart(teamOrPersonBaseDetailSection);
512 }
513
514 /**
515 * createTeamDetailSection
516 *
517 * @param parent
518 */
519 private void createTeamDetailSection(RootElement parent) {
520 destroySections();
521 TeamDetailSection teamDetailSection = formFactory.createTeamDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
522
523 addPart(teamDetailSection);
524 }
525
526 /**
527 * createPersonDetailSection
528 *
529 * @param parent
530 */
531 private void createPersonDetailSection(RootElement parent) {
532 destroySections();
533 PersonDetailSection personDetailSection = formFactory.createPersonDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
534 addPart(personDetailSection);
535 }
536
537 /**
538 * createDescriptionElementSection
539 *
540 * @param parent
541 */
542 private void createDescriptionElementSection(RootElement parent) {
543 destroySections();
544
545 DescriptionElementDetailSection descriptionElementDetailSection = formFactory.createDescriptionElementDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
546
547 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
548
549 DescriptionElementSourceSection descriptionElementSourceSection = formFactory.createDescriptionElementSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
550
551 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
552
553 DescriptionElementMediaSection descriptionElementMediaSection = formFactory.createDescriptionElementMediaSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
554
555 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
556
557 addPart(descriptionElementDetailSection);
558 addPart(descriptionElementSourceSection);
559 addPart(descriptionElementMediaSection);
560 }
561
562 /**
563 * createDescriptionSection
564 *
565 * @param parent
566 */
567 private void createDescriptionSection(RootElement parent) {
568 destroySections();
569 DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
570
571 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
572
573 NaturalLanguageSection naturalLanguageSection = formFactory.createNaturalLanguageSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
574
575 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
576
577 DescribedSpecimenSection describedSpecimenSection = formFactory.createDescribedSpecimenSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
578
579 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
580
581 // DescriptionSourceSection descriptionSourceSection = (DescriptionSourceSection) formFactory
582 // .createEntityDetailSection(EntityDetailType.DESCRIPTIONSOURCE,
583 // getConversationHolder(), parent, Section.TWISTIE);
584 //
585 // formFactory.createHorizontalSeparator(parent, SWT.BORDER);
586
587 ScopeSection scopeSection = formFactory.createScopeSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
588
589 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
590
591 addPart(descriptionDetailSection);
592 addPart(naturalLanguageSection);
593 addPart(describedSpecimenSection);
594 // addPart(descriptionSourceSection);
595 addPart(scopeSection);
596 }
597
598 /**
599 * createDescriptionSection
600 *
601 * @param parent
602 */
603 private void createSpecimenDescriptionSection(RootElement parent) {
604 destroySections();
605 DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
606 addPart(descriptionDetailSection);
607 }
608
609 /**
610 * Creates the use Description section
611 *
612 * @param parent
613 */
614 private void createUseDescriptionSection(RootElement parent) {
615 destroySections();
616 DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
617
618 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
619
620 DescriptionSourceSection descriptionSourceSection = formFactory.createDescriptionSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
621
622 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
623
624 addPart(descriptionDetailSection);
625 addPart(descriptionSourceSection);
626
627 }
628
629
630 /**
631 * @param rootElement
632 */
633 private void createImageGallerySection(RootElement parent) {
634 destroySections();
635 DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
636
637 addPart(descriptionDetailSection);
638 }
639
640 /**
641 * createMediaElementSection
642 *
643 * @param parent
644 */
645
646 private void createMediaElementSection(RootElement parent) {
647 destroySections();
648
649 MediaDetailsSection mediaDetailSection = formFactory.createMediaDetailsSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
650
651 addPart(mediaDetailSection);
652 }
653
654 /**
655 * createDerivedUnitBaseElementSection
656 *
657 * @param parent
658 */
659 private void createDerivedUnitBaseElementSection(RootElement parent) {
660 destroySections();
661
662 //different order of sections (Specimen Details as second section and expanded)
663 if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
664 DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection = formFactory.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
665 addPart(derivedUnitGeneralDetailSection);
666
667 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
668
669 DerivedUnitBaseDetailSection derivedUnitBaseDetailSection = formFactory.createDerivedUnitBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
670 addPart(derivedUnitBaseDetailSection);
671
672 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
673
674 OriginalLabelDataSection originalLabelDataSection = formFactory.createOriginalLabelDataSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
675 addPart(originalLabelDataSection);
676
677 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
678
679 GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
680 addPart(gatheringEventDetailSection);
681
682 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
683
684 FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
685 addPart(fieldUnitDetailSection);
686 }
687 else{
688 DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection = formFactory.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
689 addPart(derivedUnitGeneralDetailSection);
690
691 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
692
693 GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
694 addPart(gatheringEventDetailSection);
695
696 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
697
698 FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
699 addPart(fieldUnitDetailSection);
700
701 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
702
703 DerivedUnitBaseDetailSection derivedUnitBaseDetailSection = formFactory.createDerivedUnitBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
704 addPart(derivedUnitBaseDetailSection);
705
706 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
707
708 DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
709 addPart(determinationDetailSection);
710 }
711
712 }
713
714 private void createFieldUnitSection(RootElement parent) {
715 destroySections();
716
717 FieldUnitGeneralDetailSection fielUnitGeneralDetailSection = formFactory.createFieldUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
718
719 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
720
721 GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
722
723 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
724
725 FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
726
727 addPart(fielUnitGeneralDetailSection);
728 addPart(gatheringEventDetailSection);
729 addPart(fieldUnitDetailSection);
730
731 if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
732 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
733 DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
734 addPart(determinationDetailSection);
735 }
736 }
737
738 private void createPreservedSpecimenSpecimenSection(RootElement parent) {
739 destroySections();
740
741 PreservedSpecimenGeneralDetailSection section = formFactory.createPreservedSpecimenGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
742
743 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
744
745 PreservedSpecimenDetailSection derivedUnitBaseDetailSection = formFactory.createPreservedSpecimenDetailsSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
746
747 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
748
749 PreservedSpecimenDeterminationDetailSection determinationDetailSection = formFactory.createPreservedSpecimenDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
750
751 addPart(section);
752 addPart(derivedUnitBaseDetailSection);
753 addPart(determinationDetailSection);
754 }
755
756 private void createTissueSampleSection(RootElement parent) {
757 destroySections();
758
759 TissueSampleGeneralDetailSection section = formFactory.createTissueSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
760
761 addPart(section);
762 }
763
764 private void createDnaSampleSection(RootElement parent) {
765 destroySections();
766
767 DnaSampleGeneralDetailSection section = formFactory.createDnaSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
768
769 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
770
771 DnaQualityDetailSection qualitySection = formFactory.createDnaQualityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
772
773 addPart(section);
774 addPart(qualitySection);
775 }
776
777 private void createAmplificationSection(RootElement parent) {
778 destroySections();
779 AmplificationGeneralDetailSection generalSection = formFactory.createAmplificationGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
780
781 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
782
783 AmplificationPrimerDetailSection primerSection = formFactory.createAmplificationPrimerDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
784
785 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
786
787 AmplificationCloningDetailSection cloningSection = formFactory.createAmplificationCloningDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
788
789 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
790
791 AmplificationGelPhotoCollectionDetailSection gelPhotoSection = formFactory.createAmplificationGelPhotoCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
792
793
794 addPart(generalSection);
795 addPart(primerSection);
796 addPart(cloningSection);
797 addPart(gelPhotoSection);
798 }
799
800 private void createSequenceSection(RootElement parent) {
801 destroySections();
802
803 SequenceGeneralDetailSection section = formFactory.createSequenceGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
804
805 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
806
807 SequenceReferenceCollectionDetailSection referenceSection = formFactory.createSequenceReferenceCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
808
809 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
810
811 SequenceContigFileCollectionDetailSection contigFileSection = formFactory.createSequenceContigFileCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
812
813
814 addPart(section);
815 addPart(referenceSection);
816 addPart(contigFileSection);
817 }
818
819 private void createSingleReadSection(RootElement parent) {
820 destroySections();
821
822 SingleReadGeneralDetailSection section = formFactory.createSingleReadGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
823
824 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
825
826 SingleReadPherogramCollectionDetailSection pherogramSection = formFactory.createSingleReadPherogramCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
827
828 addPart(section);
829 addPart(pherogramSection);
830 }
831
832 private void createSpecimenScanSection(RootElement parent) {
833 destroySections();
834 SpecimenScanGeneralDetailSection section = formFactory.createSpecimenScanGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
835
836 addPart(section);
837 }
838
839 private void createLivingPlantPhotoSection(RootElement parent) {
840 destroySections();
841 LivingPlantPhotoGeneralDetailSection section = formFactory.createLivingPlantPhotoGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
842
843 addPart(section);
844 }
845
846 private void createMediaSpecimenSection(RootElement parent) {
847 destroySections();
848 MediaSpecimenGeneralDetailSection section = formFactory.createMediaSpecimenGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
849
850 addPart(section);
851 }
852
853
854
855 /**
856 * @param rootElement
857 */
858 private void createFeatureDistributionSection(RootElement parent) {
859 destroySections();
860
861 FeatureDistributionDetailSection featureDistributionSection = formFactory.createFeatureDistributionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
862
863 addPart(featureDistributionSection);
864 }
865
866 /**
867 * createPolytomousKeyNodeSection
868 *
869 * @param parent
870 */
871 private void createPolytomousKeyNodeSection(RootElement parent) {
872 destroySections();
873
874 PolytomousKeyDetailSection polytomousKeyDetailSection = formFactory.createPolytomousKeyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.COMPACT);
875
876 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
877
878 PolytomousKeyNodeDetailSection polytomousKeyNodeDetailSection = formFactory.createPolytomousKeyNodeDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
879
880 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
881
882 TaxonomicScopeSection taxonomicScopeSection = formFactory.createTaxonomicScopeSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.COMPACT);
883
884 addPart(polytomousKeyDetailSection);
885 addPart(polytomousKeyNodeDetailSection);
886 addPart(taxonomicScopeSection);
887
888 }
889
890 /**
891 * create the UseRecordSection
892 *
893 * @param parent
894 */
895 private void createUseRecordSection(RootElement parent) {
896 destroySections();
897
898 UseRecordDetailSection descriptionUseRecordSection = formFactory.createUseRecordDetailSection(getConversationHolder(), parent, this,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
899
900 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
901
902 addPart(descriptionUseRecordSection);
903
904
905 }
906
907 /**
908 * createUserSection
909 *
910 * @param parent
911 */
912 private void createUserSection(RootElement parent) {
913 destroySections();
914
915 UserDetailSection userDetailSection = formFactory.createUserDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
916
917 GroupsByUserDetailSection groupByUserDetailSection = formFactory.createGroupsByUserDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
918
919 addPart(userDetailSection);
920 addPart(groupByUserDetailSection);
921 }
922
923 /**
924 * createTaxonRelationshipSection
925 *
926 * @param parent
927 */
928 private void createTaxonRelationshipSection(RootElement parent) {
929 destroySections();
930
931 TaxonRelationshipDetailSection taxonRelationshipDetailSection = formFactory.createTaxonRelationshipDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
932
933 ReferencedEntityDetailSection referencedEntityBaseDetailSection = formFactory.createReferencedEntityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
934 addPart(taxonRelationshipDetailSection);
935 addPart(referencedEntityBaseDetailSection);
936 }
937
938 /**
939 * @param rootElement
940 */
941 private void createTermVocabularySection(RootElement parent) {
942 destroySections();
943
944 TermVocabularyDetailSection termVocabularyDetailSection = formFactory.createTermVocabularyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
945 addPart(termVocabularyDetailSection);
946 }
947
948 /**
949 * createDefinedTermSection
950 *
951 * @param parent
952 */
953 private void createDefinedTermSection(RootElement parent) {
954 destroySections();
955
956 AbstractFormSection definedTermDetailSection = formFactory.createDefinedTermDetailSection(getInput().getClass(), getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
957 addPart(definedTermDetailSection);
958 }
959
960 }