3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.editor
.view
.dataimport
.transientServices
;
12 import java
.io
.IOException
;
13 import java
.util
.Collection
;
14 import java
.util
.EnumSet
;
15 import java
.util
.List
;
18 import java
.util
.UUID
;
20 import org
.apache
.lucene
.index
.CorruptIndexException
;
21 import org
.apache
.lucene
.queryparser
.classic
.ParseException
;
22 import org
.hibernate
.LockOptions
;
23 import org
.hibernate
.Session
;
24 import org
.hibernate
.criterion
.Criterion
;
25 import org
.hibernate
.envers
.query
.criteria
.AuditCriterion
;
27 import eu
.etaxonomy
.cdm
.api
.service
.DeleteResult
;
28 import eu
.etaxonomy
.cdm
.api
.service
.ITaxonService
;
29 import eu
.etaxonomy
.cdm
.api
.service
.TaxaAndNamesSearchMode
;
30 import eu
.etaxonomy
.cdm
.api
.service
.UpdateResult
;
31 import eu
.etaxonomy
.cdm
.api
.service
.config
.DeleteConfiguratorBase
;
32 import eu
.etaxonomy
.cdm
.api
.service
.config
.IFindTaxaAndNamesConfigurator
;
33 import eu
.etaxonomy
.cdm
.api
.service
.config
.IIdentifiableEntityServiceConfigurator
;
34 import eu
.etaxonomy
.cdm
.api
.service
.config
.IncludedTaxonConfiguration
;
35 import eu
.etaxonomy
.cdm
.api
.service
.config
.MatchingTaxonConfigurator
;
36 import eu
.etaxonomy
.cdm
.api
.service
.config
.SynonymDeletionConfigurator
;
37 import eu
.etaxonomy
.cdm
.api
.service
.config
.TaxonDeletionConfigurator
;
38 import eu
.etaxonomy
.cdm
.api
.service
.dto
.FindByIdentifierDTO
;
39 import eu
.etaxonomy
.cdm
.api
.service
.dto
.IncludedTaxaDTO
;
40 import eu
.etaxonomy
.cdm
.api
.service
.exception
.DataChangeNoRollbackException
;
41 import eu
.etaxonomy
.cdm
.api
.service
.exception
.HomotypicalGroupChangeException
;
42 import eu
.etaxonomy
.cdm
.api
.service
.pager
.Pager
;
43 import eu
.etaxonomy
.cdm
.api
.service
.search
.LuceneMultiSearchException
;
44 import eu
.etaxonomy
.cdm
.api
.service
.search
.SearchResult
;
45 import eu
.etaxonomy
.cdm
.api
.service
.util
.TaxonRelationshipEdge
;
46 import eu
.etaxonomy
.cdm
.common
.monitor
.IProgressMonitor
;
47 import eu
.etaxonomy
.cdm
.model
.common
.Annotation
;
48 import eu
.etaxonomy
.cdm
.model
.common
.DefinedTerm
;
49 import eu
.etaxonomy
.cdm
.model
.common
.ISourceable
;
50 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableEntity
;
51 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableSource
;
52 import eu
.etaxonomy
.cdm
.model
.common
.LSID
;
53 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
54 import eu
.etaxonomy
.cdm
.model
.common
.Marker
;
55 import eu
.etaxonomy
.cdm
.model
.common
.MarkerType
;
56 import eu
.etaxonomy
.cdm
.model
.common
.OrderedTermVocabulary
;
57 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
;
58 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
.Direction
;
59 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionElementBase
;
60 import eu
.etaxonomy
.cdm
.model
.description
.Feature
;
61 import eu
.etaxonomy
.cdm
.model
.description
.PresenceAbsenceTerm
;
62 import eu
.etaxonomy
.cdm
.model
.location
.NamedArea
;
63 import eu
.etaxonomy
.cdm
.model
.media
.Media
;
64 import eu
.etaxonomy
.cdm
.model
.media
.MediaRepresentation
;
65 import eu
.etaxonomy
.cdm
.model
.media
.Rights
;
66 import eu
.etaxonomy
.cdm
.model
.name
.HomotypicalGroup
;
67 import eu
.etaxonomy
.cdm
.model
.name
.Rank
;
68 import eu
.etaxonomy
.cdm
.model
.name
.TaxonNameBase
;
69 import eu
.etaxonomy
.cdm
.model
.reference
.Reference
;
70 import eu
.etaxonomy
.cdm
.model
.taxon
.Classification
;
71 import eu
.etaxonomy
.cdm
.model
.taxon
.Synonym
;
72 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationship
;
73 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationshipType
;
74 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
75 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonBase
;
76 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonNode
;
77 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationship
;
78 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationshipType
;
79 import eu
.etaxonomy
.cdm
.model
.view
.AuditEvent
;
80 import eu
.etaxonomy
.cdm
.model
.view
.AuditEventRecord
;
81 import eu
.etaxonomy
.cdm
.persistence
.dao
.common
.AuditEventSort
;
82 import eu
.etaxonomy
.cdm
.persistence
.dto
.MergeResult
;
83 import eu
.etaxonomy
.cdm
.persistence
.dto
.UuidAndTitleCache
;
84 import eu
.etaxonomy
.cdm
.persistence
.fetch
.CdmFetch
;
85 import eu
.etaxonomy
.cdm
.persistence
.query
.Grouping
;
86 import eu
.etaxonomy
.cdm
.persistence
.query
.MatchMode
;
87 import eu
.etaxonomy
.cdm
.persistence
.query
.OrderHint
;
88 import eu
.etaxonomy
.cdm
.strategy
.cache
.common
.IIdentifiableEntityCacheStrategy
;
89 import eu
.etaxonomy
.cdm
.strategy
.match
.IMatchStrategy
;
90 import eu
.etaxonomy
.cdm
.strategy
.merge
.IMergeStrategy
;
97 public class TransientTaxonService
implements ITaxonService
{
99 private final ITaxonService defaultService
;
102 * @param defaultTaxonService
104 public TransientTaxonService(ITaxonService defaultTaxonService
) {
105 this.defaultService
= defaultTaxonService
;
113 * @param propertyPaths
115 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
118 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(TaxonBase t
, Integer pageSize
, Integer pageNumber
, AuditEventSort sort
, List
<String
> propertyPaths
) {
119 return defaultService
.pageAuditEvents(t
, pageSize
, pageNumber
, sort
, propertyPaths
);
123 * @param annotatedObj
128 * @param propertyPaths
130 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
133 public Pager
<Annotation
> getAnnotations(TaxonBase annotatedObj
, MarkerType status
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
134 return defaultService
.getAnnotations(annotatedObj
, status
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
139 * @see eu.etaxonomy.cdm.api.service.IService#clear()
142 public void clear() {
143 defaultService
.clear();
149 * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
152 public void lock(TaxonBase t
, LockOptions lockOptions
) {
153 defaultService
.lock(t
, lockOptions
);
159 * @param propertyPaths
160 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
163 public void refresh(TaxonBase t
, LockOptions lockOptions
, List
<String
> propertyPaths
) {
164 defaultService
.refresh(t
, lockOptions
, propertyPaths
);
169 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
172 public void updateTitleCache() {
173 defaultService
.updateTitleCache();
179 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
182 public AuditEventRecord
<TaxonBase
> getNextAuditEvent(TaxonBase t
) {
183 return defaultService
.getNextAuditEvent(t
);
187 * @param annotatableEntity
192 * @param propertyPaths
194 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
197 public Pager
<Marker
> getMarkers(TaxonBase annotatableEntity
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
198 return defaultService
.getMarkers(annotatableEntity
, technical
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
204 * @param cacheStrategy
206 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
209 public void updateTitleCache(Class
<?
extends TaxonBase
> clazz
, Integer stepSize
, IIdentifiableEntityCacheStrategy
<TaxonBase
> cacheStrategy
, IProgressMonitor monitor
) {
210 defaultService
.updateTitleCache(clazz
, stepSize
, cacheStrategy
, monitor
);
216 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
219 public AuditEventRecord
<TaxonBase
> getPreviousAuditEvent(TaxonBase t
) {
220 return defaultService
.getPreviousAuditEvent(t
);
226 * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
229 public int count(Class
<?
extends TaxonBase
> clazz
) {
230 return defaultService
.count(clazz
);
241 * @param propertyPaths
243 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
246 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(Class
<?
extends TaxonBase
> clazz
, AuditEvent from
, AuditEvent to
, List
<AuditCriterion
> criteria
, Integer pageSize
, Integer pageValue
, AuditEventSort sort
, List
<String
> propertyPaths
) {
247 return defaultService
.pageAuditEvents(clazz
, from
, to
, criteria
, pageSize
, pageValue
, sort
, propertyPaths
);
253 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
256 public TaxonBase
find(LSID lsid
) {
257 return defaultService
.find(lsid
);
261 * @param persistentObject
263 * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
266 public DeleteResult
delete(TaxonBase persistentObject
) {
267 return defaultService
.delete(persistentObject
);
275 * @param propertyPaths
277 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
280 public List
<Object
[]> groupMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
281 return defaultService
.groupMarkers(clazz
, technical
, pageSize
, pageNumber
, propertyPaths
);
287 * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
290 public boolean exists(UUID uuid
) {
291 return defaultService
.exists(uuid
);
299 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
302 public TaxonBase
replace(TaxonBase x
, TaxonBase y
) {
303 return defaultService
.replace(x
, y
);
309 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
312 public List
<TaxonBase
> find(Set
<UUID
> uuidSet
) {
313 return defaultService
.find(uuidSet
);
320 * @param propertyPaths
322 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
325 public Pager
<IdentifiableSource
> getSources(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
326 return defaultService
.getSources(t
, pageSize
, pageNumber
, propertyPaths
);
332 * @param onlyWithChildren
335 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.reference.Reference, eu.etaxonomy.cdm.persistence.fetch.CdmFetch, boolean)
339 public List
<Taxon
> getRootTaxa(Reference sec
, CdmFetch cdmFetch
, boolean onlyWithChildren
) {
340 return defaultService
.getRootTaxa(sec
, cdmFetch
, onlyWithChildren
);
346 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
349 public TaxonBase
find(UUID uuid
) {
350 return defaultService
.find(uuid
);
356 * @param onlyWithChildren
357 * @param withMisapplications
358 * @param propertyPaths
361 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.name.Rank, eu.etaxonomy.cdm.model.reference.Reference, boolean, boolean, java.util.List)
365 public List
<Taxon
> getRootTaxa(Rank rank
, Reference sec
, boolean onlyWithChildren
, boolean withMisapplications
, List
<String
> propertyPaths
) {
366 return defaultService
.getRootTaxa(rank
, sec
, onlyWithChildren
, withMisapplications
, propertyPaths
);
372 * @see eu.etaxonomy.cdm.api.service.IService#find(int)
375 public TaxonBase
find(int id
) {
376 return defaultService
.find(id
);
383 * @param propertyPaths
385 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
388 public Pager
<Rights
> getRights(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
389 return defaultService
.getRights(t
, pageSize
, pageNumber
, propertyPaths
);
396 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
399 public int countMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
) {
400 return defaultService
.countMarkers(clazz
, technical
);
406 * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
409 public List
<TaxonBase
> findById(Set
<Integer
> idSet
) {
410 return defaultService
.findById(idSet
);
418 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
421 public ISourceable
getSourcedObjectByIdInSource(Class clazz
, String idInSource
, String idNamespace
) {
422 return defaultService
.getSourcedObjectByIdInSource(clazz
, idInSource
, idNamespace
);
427 * @see eu.etaxonomy.cdm.api.service.IService#getSession()
430 public Session
getSession() {
431 return defaultService
.getSession();
439 * @param propertyPaths
441 * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
444 public List
<Object
[]> group(Class
<?
extends TaxonBase
> clazz
, Integer limit
, Integer start
, List
<Grouping
> groups
, List
<String
> propertyPaths
) {
445 return defaultService
.group(clazz
, limit
, start
, groups
, propertyPaths
);
452 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllRelationships(int, int)
455 public List
<RelationshipBase
> getAllRelationships(int limit
, int start
) {
456 return defaultService
.getAllRelationships(limit
, start
);
467 * @param propertyPaths
469 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
472 public Pager
<TaxonBase
> findByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
473 return defaultService
.findByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
479 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getTaxonRelationshipTypeVocabulary()
483 public OrderedTermVocabulary
<TaxonRelationshipType
> getTaxonRelationshipTypeVocabulary() {
484 return defaultService
.getTaxonRelationshipTypeVocabulary();
491 * @see eu.etaxonomy.cdm.api.service.ITaxonService#searchTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)
494 public List
<TaxonBase
> searchTaxaByName(String name
, Reference sec
) {
495 return defaultService
.searchTaxaByName(name
, sec
);
503 public UpdateResult
swapSynonymAndAcceptedTaxon(Synonym arg0
, Taxon arg1
) {
504 return defaultService
.swapSynonymAndAcceptedTaxon(arg0
, arg1
);
513 * @param propertyPaths
515 * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
518 public <S
extends TaxonBase
> List
<S
> list(Class
<S
> type
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
519 return defaultService
.list(type
, limit
, start
, orderHints
, propertyPaths
);
523 * @param configurator
525 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
528 public Pager
<TaxonBase
> findByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
529 return defaultService
.findByTitle(configurator
);
534 * @param acceptedTaxon
535 * @param deleteSynonym
536 * @param copyCitationInfo
538 * @param microCitation
540 * @throws HomotypicalGroupChangeException
541 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
544 public Taxon
changeSynonymToAcceptedTaxon(Synonym synonym
, Taxon acceptedTaxon
, boolean deleteSynonym
, boolean copyCitationInfo
, Reference citation
, String microCitation
) throws HomotypicalGroupChangeException
{
545 return defaultService
.changeSynonymToAcceptedTaxon(synonym
, acceptedTaxon
, deleteSynonym
, copyCitationInfo
, citation
, microCitation
);
554 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
557 public Integer
countByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
) {
558 return defaultService
.countByTitle(clazz
, queryString
, matchmode
, criteria
);
564 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
567 public TaxonBase
load(UUID uuid
) {
568 return defaultService
.load(uuid
);
573 * @param propertyPaths
575 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
578 public TaxonBase
load(UUID uuid
, List
<String
> propertyPaths
) {
579 return defaultService
.load(uuid
, propertyPaths
);
583 * @param configurator
585 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
588 public Integer
countByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
589 return defaultService
.countByTitle(configurator
);
593 * @param transientObject
595 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
598 public TaxonBase
merge(TaxonBase transientObject
) {
599 return defaultService
.merge(transientObject
);
610 * @param propertyPaths
612 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
615 public List
<TaxonBase
> listByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
616 return defaultService
.listByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
624 * @param propertyPaths
626 * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
629 public <S
extends TaxonBase
> Pager
<S
> page(Class
<S
> type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
630 return defaultService
.page(type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
634 * @param persistentObject
636 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
639 public UUID
refresh(TaxonBase persistentObject
) {
640 return defaultService
.refresh(persistentObject
);
646 * @param taxonRelationshipType
648 * @param microReference
650 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToRelatedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
653 public Taxon
changeSynonymToRelatedTaxon(Synonym synonym
, Taxon toTaxon
, TaxonRelationshipType taxonRelationshipType
, Reference reference
, String microReference
) {
654 return defaultService
.changeSynonymToRelatedTaxon(synonym
, toTaxon
, taxonRelationshipType
, reference
, microReference
);
665 * @param propertyPaths
667 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
670 public List
<TaxonBase
> listByReferenceTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
671 return defaultService
.listByReferenceTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
679 * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
682 public List
<TaxonBase
> rows(String tableName
, int limit
, int start
) {
683 return defaultService
.rows(tableName
, limit
, start
);
687 * @param newInstances
689 * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
692 public Map
<UUID
, TaxonBase
> save(Collection
<TaxonBase
> newInstances
) {
700 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
703 public long deleteSynonymRelationships(Synonym syn
, Taxon taxon
) {
704 return defaultService
.deleteSynonymRelationships(syn
, taxon
);
710 * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
713 public TaxonBase
save(TaxonBase newInstance
) {
718 * @param transientObject
720 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
723 public UUID
saveOrUpdate(TaxonBase transientObject
) {
729 * @param newHomotypicalGroup
731 * @param removeFromOtherTaxa
732 * @param setBasionymRelationIfApplicable
733 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeHomotypicalGroupOfSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.name.HomotypicalGroup, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean)
736 public void changeHomotypicalGroupOfSynonym(Synonym synonym
, HomotypicalGroup newHomotypicalGroup
, Taxon targetTaxon
, boolean removeFromOtherTaxa
, boolean setBasionymRelationIfApplicable
) {
737 defaultService
.changeHomotypicalGroupOfSynonym(synonym
, newHomotypicalGroup
, targetTaxon
, removeFromOtherTaxa
, setBasionymRelationIfApplicable
);
741 * @param transientObjects
743 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
746 public Map
<UUID
, TaxonBase
> saveOrUpdate(Collection
<TaxonBase
> transientObjects
) {
751 * @param transientObject
753 * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
756 public UUID
update(TaxonBase transientObject
) {
757 return defaultService
.update(transientObject
);
762 * @param includeProperties
766 * @param propertyPaths
768 * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
771 public List
<TaxonBase
> list(TaxonBase example
, Set
<String
> includeProperties
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
772 return defaultService
.list(example
, includeProperties
, limit
, start
, orderHints
, propertyPaths
);
776 * @param oldSynonymRelation
778 * @param moveHomotypicGroup
779 * @param newSynonymRelationshipType
780 * @param newReference
781 * @param newReferenceDetail
782 * @param keepReference
784 * @throws HomotypicalGroupChangeException
785 * @see eu.etaxonomy.cdm.api.service.ITaxonService#moveSynonymToAnotherTaxon(eu.etaxonomy.cdm.model.taxon.SynonymRelationship, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String, boolean)
788 public UpdateResult
moveSynonymToAnotherTaxon(SynonymRelationship oldSynonymRelation
, Taxon newTaxon
, boolean moveHomotypicGroup
, SynonymRelationshipType newSynonymRelationshipType
, Reference newReference
, String newReferenceDetail
, boolean keepReference
) throws HomotypicalGroupChangeException
{
789 return defaultService
.moveSynonymToAnotherTaxon(oldSynonymRelation
, newTaxon
, moveHomotypicGroup
, newSynonymRelationshipType
, newReference
, newReferenceDetail
, keepReference
);
794 * @param matchStrategy
795 * @param mergeStrategy
797 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
800 public int deduplicate(Class
<?
extends TaxonBase
> clazz
, IMatchStrategy matchStrategy
, IMergeStrategy mergeStrategy
) {
801 return defaultService
.deduplicate(clazz
, matchStrategy
, mergeStrategy
);
812 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
815 public Pager
<TaxonBase
> findTitleCache(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, MatchMode matchMode
) {
816 return defaultService
.findTitleCache(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, matchMode
);
825 * @param propertyPaths
827 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
830 public List
<TaxonRelationship
> listToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
831 return defaultService
.listToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
840 * @param propertyPaths
842 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
845 public Pager
<TaxonRelationship
> pageToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
846 return defaultService
.pageToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
855 * @param propertyPaths
857 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
860 public List
<TaxonRelationship
> listFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
861 return defaultService
.listFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
870 * @param propertyPaths
872 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
875 public Pager
<TaxonRelationship
> pageFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
876 return defaultService
.pageFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
881 * @param includeRelationships
885 * @param propertyPaths
887 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listRelatedTaxa(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List)
890 public Set
<Taxon
> listRelatedTaxa(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Integer maxDepth
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
891 return defaultService
.listRelatedTaxa(taxon
, includeRelationships
, maxDepth
, limit
, start
, propertyPaths
);
898 * @param propertyPaths
900 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listClassifications(eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
903 public List
<Classification
> listClassifications(TaxonBase taxonBase
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
904 return defaultService
.listClassifications(taxonBase
, limit
, start
, propertyPaths
);
913 * @param propertyPaths
915 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
918 public Pager
<SynonymRelationship
> getSynonyms(Synonym synonym
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
919 return defaultService
.getSynonyms(synonym
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
928 * @param propertyPaths
930 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
933 public Pager
<SynonymRelationship
> getSynonyms(Taxon taxon
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
934 return defaultService
.getSynonyms(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
939 * @param propertyPaths
941 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHomotypicSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
944 public List
<Synonym
> getHomotypicSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
945 return defaultService
.getHomotypicSynonymsByHomotypicGroup(taxon
, propertyPaths
);
950 * @param propertyPaths
952 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHeterotypicSynonymyGroups(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
955 public List
<List
<Synonym
>> getHeterotypicSynonymyGroups(Taxon taxon
, List
<String
> propertyPaths
) {
956 return defaultService
.getHeterotypicSynonymyGroups(taxon
, propertyPaths
);
965 * @param propertyPaths
967 * @see eu.etaxonomy.cdm.api.service.ITaxonService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
970 public Pager
<TaxonBase
> search(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
971 return defaultService
.search(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
977 * @param infragenericEpithet
978 * @param specificEpithet
979 * @param infraspecificEpithet
984 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
987 public Pager
<TaxonBase
> findTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
988 return defaultService
.findTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
994 * @param infragenericEpithet
995 * @param specificEpithet
996 * @param infraspecificEpithet
1001 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
1004 public List
<TaxonBase
> listTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
1005 return defaultService
.listTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
1009 * @param configurator
1011 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNames(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1014 public Pager
<IdentifiableEntity
> findTaxaAndNames(IFindTaxaAndNamesConfigurator configurator
) {
1015 return defaultService
.findTaxaAndNames(configurator
);
1019 * @param queryString
1020 * @param classification
1022 * @param highlightFragments
1026 * @param propertyPaths
1028 * @throws CorruptIndexException
1029 * @throws IOException
1030 * @throws ParseException
1031 * @throws LuceneMultiSearchException
1033 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByEverythingFullText(java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1037 public Pager
<SearchResult
<TaxonBase
>> findByEverythingFullText(String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1038 return defaultService
.findByEverythingFullText(queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1043 * @param queryString
1044 * @param classification
1046 * @param highlightFragments
1050 * @param propertyPaths
1052 * @throws CorruptIndexException
1053 * @throws IOException
1054 * @throws ParseException
1055 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1058 public Pager
<SearchResult
<TaxonBase
>> findByFullText(Class
<?
extends TaxonBase
> clazz
, String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1059 return defaultService
.findByFullText(clazz
, queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1064 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDistribution(java.util.List, java.util.List, eu.etaxonomy.cdm.model.taxon.Classification, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1067 public Pager
<SearchResult
<TaxonBase
>> findByDistribution(List
<NamedArea
> areaFilter
,
1068 List
<PresenceAbsenceTerm
> statusFilter
, Classification classification
, Integer pageSize
,
1069 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws IOException
,
1071 return defaultService
.findByDistribution(areaFilter
, statusFilter
, classification
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1076 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesByFullText(java.util.EnumSet, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.Set, java.util.Set, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1079 public Pager
<SearchResult
<TaxonBase
>> findTaxaAndNamesByFullText(EnumSet
<TaxaAndNamesSearchMode
> searchModes
,
1080 String queryString
, Classification classification
, Set
<NamedArea
> namedAreas
,
1081 Set
<PresenceAbsenceTerm
> distributionStatus
, List
<Language
> languages
, boolean highlightFragments
,
1082 Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
)
1083 throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1084 return defaultService
.findTaxaAndNamesByFullText(searchModes
, queryString
, classification
, namedAreas
, distributionStatus
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1089 * @param queryString
1090 * @param classification
1093 * @param highlightFragments
1097 * @param propertyPaths
1099 * @throws CorruptIndexException
1100 * @throws IOException
1101 * @throws ParseException
1102 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDescriptionElementFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1105 public Pager
<SearchResult
<TaxonBase
>> findByDescriptionElementFullText(Class
<?
extends DescriptionElementBase
> clazz
, String queryString
, Classification classification
, List
<Feature
> features
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1106 return defaultService
.findByDescriptionElementFullText(clazz
, queryString
, classification
, features
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1113 * @param widthOrDuration
1117 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllMedia(eu.etaxonomy.cdm.model.taxon.Taxon, int, int, int, java.lang.String[])
1121 public List
<MediaRepresentation
> getAllMedia(Taxon taxon
, int size
, int height
, int widthOrDuration
, String
[] mimeTypes
) {
1122 return defaultService
.getAllMedia(taxon
, size
, height
, widthOrDuration
, mimeTypes
);
1127 * @param includeRelationships
1128 * @param limitToGalleries
1129 * @param propertyPath
1132 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxonDescriptionMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, boolean, java.util.List)
1136 public List
<Media
> listTaxonDescriptionMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, boolean limitToGalleries
, List
<String
> propertyPath
) {
1137 return defaultService
.listTaxonDescriptionMedia(taxon
, includeRelationships
, limitToGalleries
, propertyPath
);
1142 * @param includeRelationships
1143 * @param limitToGalleries
1144 * @param includeTaxonDescriptions
1145 * @param includeOccurrences
1146 * @param includeTaxonNameDescriptions
1147 * @param propertyPath
1149 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.util.List)
1152 public List
<Media
> listMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Boolean limitToGalleries
, Boolean includeTaxonDescriptions
, Boolean includeOccurrences
, Boolean includeTaxonNameDescriptions
, List
<String
> propertyPath
) {
1153 return defaultService
.listMedia(taxon
, includeRelationships
, limitToGalleries
, includeTaxonDescriptions
, includeOccurrences
, includeTaxonNameDescriptions
, propertyPath
);
1159 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByID(java.util.Set)
1162 public List
<TaxonBase
> findTaxaByID(Set
<Integer
> listOfIDs
) {
1163 return defaultService
.findTaxaByID(listOfIDs
);
1168 * @param propertyPaths
1170 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxonByUuid(java.util.UUID, java.util.List)
1173 public TaxonBase
findTaxonByUuid(UUID uuid
, List
<String
> propertyPaths
) {
1174 return defaultService
.findTaxonByUuid(uuid
, propertyPaths
);
1179 * @see eu.etaxonomy.cdm.api.service.ITaxonService#countAllRelationships()
1182 public int countAllRelationships() {
1183 return defaultService
.countAllRelationships();
1187 * @param propertyPath
1189 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNames(java.util.List)
1192 public List
<TaxonNameBase
> findIdenticalTaxonNames(List
<String
> propertyPath
) {
1193 return defaultService
.findIdenticalTaxonNames(propertyPath
);
1197 * @param propertyPath
1199 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNameIds(java.util.List)
1202 public List
<TaxonNameBase
> findIdenticalTaxonNameIds(List
<String
> propertyPath
) {
1203 return defaultService
.findIdenticalTaxonNameIds(propertyPath
);
1209 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getPhylumName(eu.etaxonomy.cdm.model.name.TaxonNameBase)
1212 public String
getPhylumName(TaxonNameBase name
) {
1213 return defaultService
.getPhylumName(name
);
1219 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym)
1222 public long deleteSynonymRelationships(Synonym syn
) {
1223 return defaultService
.deleteSynonymRelationships(syn
);
1232 * @param propertyPaths
1235 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listSynonymRelationships(eu.etaxonomy.cdm.model.taxon.TaxonBase, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List, eu.etaxonomy.cdm.model.common.RelationshipBase.Direction)
1238 public List
<SynonymRelationship
> listSynonymRelationships(TaxonBase taxonBase
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
, Direction direction
) {
1239 return defaultService
.listSynonymRelationships(taxonBase
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
, direction
);
1245 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(java.lang.String)
1248 public Taxon
findBestMatchingTaxon(String taxonName
) {
1249 return defaultService
.findBestMatchingTaxon(taxonName
);
1255 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
1258 public Taxon
findBestMatchingTaxon(MatchingTaxonConfigurator config
) {
1259 return defaultService
.findBestMatchingTaxon(config
);
1265 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingSynonym(java.lang.String)
1268 public Synonym
findBestMatchingSynonym(String taxonName
) {
1269 return defaultService
.findBestMatchingSynonym(taxonName
);
1274 * @param configurator
1276 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesForEditor(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1279 public List
<UuidAndTitleCache
<IdentifiableEntity
>> findTaxaAndNamesForEditor(IFindTaxaAndNamesConfigurator configurator
) {
1280 return defaultService
.findTaxaAndNamesForEditor(configurator
);
1287 * @param doWithMisappliedNames
1289 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, boolean)
1292 public List
<Synonym
> createInferredSynonyms(Taxon taxon
, Classification tree
, SynonymRelationshipType type
, boolean doWithMisappliedNames
) {
1293 return defaultService
.createInferredSynonyms(taxon
, tree
, type
, doWithMisappliedNames
);
1299 * @param doWithMisappliedNames
1301 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createAllInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, boolean)
1304 public List
<Synonym
> createAllInferredSynonyms(Taxon taxon
, Classification tree
, boolean doWithMisappliedNames
) {
1305 return defaultService
.createAllInferredSynonyms(taxon
, tree
, doWithMisappliedNames
);
1309 public DeleteResult
deleteSynonym(Synonym arg0
, SynonymDeletionConfigurator arg1
) {
1310 return defaultService
.deleteSynonym(arg0
, arg1
);
1314 public DeleteResult
deleteSynonym(Synonym arg0
, Taxon arg1
, SynonymDeletionConfigurator arg2
) {
1315 return defaultService
.deleteSynonym(arg0
, arg1
, arg2
);
1319 public List
<List
<Synonym
>> getSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
1320 return defaultService
.getSynonymsByHomotypicGroup(taxon
, propertyPaths
);
1324 public Synonym
changeRelatedTaxonToSynonym(Taxon fromTaxon
, Taxon toTaxon
,
1325 TaxonRelationshipType oldRelationshipType
,
1326 SynonymRelationshipType synonymRelationshipType
)
1327 throws DataChangeNoRollbackException
{
1329 return defaultService
.changeRelatedTaxonToSynonym(fromTaxon
, toTaxon
, oldRelationshipType
, synonymRelationshipType
);
1333 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1336 public Pager
<Taxon
> pageAcceptedTaxaFor(UUID synonymUuid
, UUID classificationUuid
, Integer pageSize
,
1337 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
1338 return defaultService
.pageAcceptedTaxaFor(synonymUuid
, classificationUuid
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1342 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1345 public List
<Taxon
> listAcceptedTaxaFor(UUID synonymUuid
, UUID classificationUuid
, Integer pageSize
,
1346 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
1347 return defaultService
.listAcceptedTaxaFor(synonymUuid
, classificationUuid
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1351 public DeleteResult
isDeletable(TaxonBase object
,
1352 DeleteConfiguratorBase config
) {
1353 // TODO Auto-generated method stub
1358 public IncludedTaxaDTO
listIncludedTaxa(UUID taxonUuid
,
1359 IncludedTaxonConfiguration configuration
) {
1360 // TODO Auto-generated method stub
1365 public TaxonBase
findWithoutFlush(UUID uuid
) {
1366 return defaultService
.findWithoutFlush(uuid
);
1370 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
1373 public List
<TaxonBase
> findTaxaByName(MatchingTaxonConfigurator config
) {
1374 return defaultService
.findTaxaByName(config
);
1378 public <S
extends TaxonBase
> Pager
<FindByIdentifierDTO
<S
>> findByIdentifier(Class
<S
> clazz
, String identifier
, DefinedTerm identifierType
, MatchMode matchmode
, boolean includeEntity
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
){
1379 return defaultService
.findByIdentifier(clazz
, identifier
, identifierType
, matchmode
, includeEntity
, pageSize
, pageNumber
, propertyPaths
);
1383 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByIdentifier(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.common.DefinedTerm, eu.etaxonomy.cdm.model.taxon.TaxonNode, eu.etaxonomy.cdm.persistence.query.MatchMode, boolean, java.lang.Integer, java.lang.Integer, java.util.List)
1386 public <S
extends TaxonBase
> Pager
<FindByIdentifierDTO
<S
>> findByIdentifier(Class
<S
> clazz
, String identifier
,
1387 DefinedTerm identifierType
, TaxonNode subtreeFilter
, MatchMode matchmode
, boolean includeEntity
,
1388 Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
1389 return defaultService
.findByIdentifier(clazz
, identifier
, identifierType
, subtreeFilter
, matchmode
, includeEntity
, pageSize
, pageNumber
, propertyPaths
);
1395 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(java.util.UUID, java.util.UUID, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
1398 public DeleteResult
deleteSynonym(UUID synonymUuid
, UUID taxonUuid
, SynonymDeletionConfigurator config
) {
1399 return defaultService
.deleteSynonym(synonymUuid
, taxonUuid
, config
);
1408 public UpdateResult
swapSynonymAndAcceptedTaxon(UUID synonymUUid
, UUID acceptedTaxonUuid
) {
1409 return defaultService
.swapSynonymAndAcceptedTaxon(synonymUUid
, acceptedTaxonUuid
);
1413 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteTaxon(java.util.UUID, eu.etaxonomy.cdm.api.service.config.TaxonDeletionConfigurator, java.util.UUID)
1416 public DeleteResult
deleteTaxon(UUID taxonUuid
, TaxonDeletionConfigurator config
, UUID classificationUuid
) {
1417 return defaultService
.deleteTaxon(taxonUuid
, config
, classificationUuid
);
1422 public UpdateResult
moveFactualDateToAnotherTaxon(UUID arg0
, UUID arg1
) {
1423 return defaultService
.moveFactualDateToAnotherTaxon(arg0
, arg1
);
1431 public UpdateResult
moveSynonymToAnotherTaxon(
1432 SynonymRelationship oldSynonymRelation
, UUID newTaxonUUID
,
1433 boolean moveHomotypicGroup
,
1434 SynonymRelationshipType newSynonymRelationshipType
,
1435 Reference reference
, String referenceDetail
, boolean keepReference
)
1436 throws HomotypicalGroupChangeException
{
1438 return defaultService
.moveSynonymToAnotherTaxon(oldSynonymRelation
, newTaxonUUID
, moveHomotypicGroup
, newSynonymRelationshipType
, reference
, referenceDetail
, keepReference
);
1443 * @see eu.etaxonomy.cdm.api.service.IService#delete(java.util.UUID)
1446 public DeleteResult
delete(UUID uuid
) {
1447 return defaultService
.delete(uuid
);
1452 * @see eu.etaxonomy.cdm.api.service.IService#delete(java.util.Collection)
1455 public DeleteResult
delete(Collection
<UUID
> arg0
) {
1456 return defaultService
.delete(arg0
);
1460 * @see eu.etaxonomy.cdm.api.service.IService#merge(java.util.List)
1463 public List
<TaxonBase
> merge(List
<TaxonBase
> arg0
) {
1464 return defaultService
.merge(arg0
);
1468 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(java.util.UUID, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
1471 public DeleteResult
deleteSynonym(UUID arg0
, SynonymDeletionConfigurator arg1
) {
1472 return defaultService
.deleteSynonym(arg0
, arg1
);
1476 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToRelatedTaxon(java.util.UUID, java.util.UUID, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
1479 public UpdateResult
changeSynonymToRelatedTaxon(UUID arg0
, UUID arg1
, TaxonRelationshipType arg2
, Reference arg3
,
1481 return defaultService
.changeSynonymToRelatedTaxon(arg0
, arg1
, arg2
, arg3
, arg4
);
1485 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeRelatedTaxonToSynonym(java.util.UUID, java.util.UUID, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType)
1488 public UpdateResult
changeRelatedTaxonToSynonym(UUID arg0
, UUID arg1
, TaxonRelationshipType arg2
,
1489 SynonymRelationshipType arg3
) throws DataChangeNoRollbackException
{
1490 return defaultService
.changeRelatedTaxonToSynonym(arg0
, arg1
, arg2
, arg3
);
1495 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToAcceptedTaxon(java.util.UUID, java.util.UUID, java.util.UUID, boolean, boolean, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
1498 public UpdateResult
changeSynonymToAcceptedTaxon(UUID arg0
, UUID arg1
, UUID arg2
, boolean arg3
, boolean arg4
,
1499 Reference arg5
, String arg6
) throws HomotypicalGroupChangeException
{
1500 return defaultService
.changeSynonymToAcceptedTaxon(arg0
, arg1
, arg2
, arg3
, arg4
, arg5
, arg6
);
1504 * @see eu.etaxonomy.cdm.api.service.IService#merge(java.util.List, boolean)
1507 public List
<MergeResult
<TaxonBase
>> merge(List
<TaxonBase
> arg0
, boolean arg1
) {
1508 return defaultService
.merge(arg0
, arg1
);
1512 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase, boolean)
1515 public MergeResult
<TaxonBase
> merge(TaxonBase arg0
, boolean arg1
) {
1516 return defaultService
.merge(arg0
, arg1
);
1520 * @see eu.etaxonomy.cdm.api.service.IService#loadWithUpdate(java.util.UUID)
1523 public TaxonBase
loadWithUpdate(UUID arg0
) {
1524 return defaultService
.loadWithUpdate(arg0
);
1531 public List
<TaxonBase
> load(List
<UUID
> arg0
, List
<String
> arg1
) {
1532 return defaultService
.load(arg0
, arg1
);
1536 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCache(
1537 Integer limit
, String pattern
) {
1538 return defaultService
.getUuidAndTitleCache(limit
, pattern
);
1542 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheTaxon(
1543 Integer limit
, String pattern
) {
1544 return defaultService
.getUuidAndTitleCacheTaxon(limit
, pattern
);
1548 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheSynonym(
1549 Integer limit
, String pattern
) {
1550 return defaultService
.getUuidAndTitleCacheSynonym(limit
, pattern
);
1554 public List
<TaxonBase
> listByIds(Set
<Integer
> arg0
, Integer arg1
,
1555 Integer arg2
, List
<OrderHint
> arg3
, List
<String
> arg4
) {
1557 return defaultService
.listByIds(arg0
, arg1
, arg2
, arg3
, arg4
);