3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.editor
.view
.dataimport
.transientServices
;
12 import java
.io
.IOException
;
13 import java
.util
.Collection
;
14 import java
.util
.EnumSet
;
15 import java
.util
.List
;
18 import java
.util
.UUID
;
20 import org
.apache
.lucene
.index
.CorruptIndexException
;
21 import org
.apache
.lucene
.queryParser
.ParseException
;
22 import org
.hibernate
.LockMode
;
23 import org
.hibernate
.Session
;
24 import org
.hibernate
.criterion
.Criterion
;
25 import org
.hibernate
.envers
.query
.criteria
.AuditCriterion
;
27 import eu
.etaxonomy
.cdm
.api
.service
.DeleteResult
;
28 import eu
.etaxonomy
.cdm
.api
.service
.ITaxonService
;
29 import eu
.etaxonomy
.cdm
.api
.service
.TaxaAndNamesSearchMode
;
30 import eu
.etaxonomy
.cdm
.api
.service
.config
.DeleteConfiguratorBase
;
31 import eu
.etaxonomy
.cdm
.api
.service
.config
.IFindTaxaAndNamesConfigurator
;
32 import eu
.etaxonomy
.cdm
.api
.service
.config
.IIdentifiableEntityServiceConfigurator
;
33 import eu
.etaxonomy
.cdm
.api
.service
.config
.IncludedTaxonConfiguration
;
34 import eu
.etaxonomy
.cdm
.api
.service
.config
.MatchingTaxonConfigurator
;
35 import eu
.etaxonomy
.cdm
.api
.service
.config
.SynonymDeletionConfigurator
;
36 import eu
.etaxonomy
.cdm
.api
.service
.config
.TaxonDeletionConfigurator
;
37 import eu
.etaxonomy
.cdm
.api
.service
.dto
.IncludedTaxaDTO
;
38 import eu
.etaxonomy
.cdm
.api
.service
.exception
.DataChangeNoRollbackException
;
39 import eu
.etaxonomy
.cdm
.api
.service
.exception
.HomotypicalGroupChangeException
;
40 import eu
.etaxonomy
.cdm
.api
.service
.pager
.Pager
;
41 import eu
.etaxonomy
.cdm
.api
.service
.search
.LuceneMultiSearchException
;
42 import eu
.etaxonomy
.cdm
.api
.service
.search
.SearchResult
;
43 import eu
.etaxonomy
.cdm
.api
.service
.util
.TaxonRelationshipEdge
;
44 import eu
.etaxonomy
.cdm
.common
.monitor
.IProgressMonitor
;
45 import eu
.etaxonomy
.cdm
.model
.common
.Annotation
;
46 import eu
.etaxonomy
.cdm
.model
.common
.ISourceable
;
47 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableEntity
;
48 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableSource
;
49 import eu
.etaxonomy
.cdm
.model
.common
.LSID
;
50 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
51 import eu
.etaxonomy
.cdm
.model
.common
.Marker
;
52 import eu
.etaxonomy
.cdm
.model
.common
.MarkerType
;
53 import eu
.etaxonomy
.cdm
.model
.common
.OrderedTermVocabulary
;
54 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
;
55 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
.Direction
;
56 import eu
.etaxonomy
.cdm
.model
.common
.UuidAndTitleCache
;
57 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionElementBase
;
58 import eu
.etaxonomy
.cdm
.model
.description
.Feature
;
59 import eu
.etaxonomy
.cdm
.model
.description
.PresenceAbsenceTermBase
;
60 import eu
.etaxonomy
.cdm
.model
.location
.NamedArea
;
61 import eu
.etaxonomy
.cdm
.model
.media
.Media
;
62 import eu
.etaxonomy
.cdm
.model
.media
.MediaRepresentation
;
63 import eu
.etaxonomy
.cdm
.model
.media
.Rights
;
64 import eu
.etaxonomy
.cdm
.model
.name
.HomotypicalGroup
;
65 import eu
.etaxonomy
.cdm
.model
.name
.Rank
;
66 import eu
.etaxonomy
.cdm
.model
.name
.TaxonNameBase
;
67 import eu
.etaxonomy
.cdm
.model
.reference
.Reference
;
68 import eu
.etaxonomy
.cdm
.model
.taxon
.Classification
;
69 import eu
.etaxonomy
.cdm
.model
.taxon
.Synonym
;
70 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationship
;
71 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationshipType
;
72 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
73 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonBase
;
74 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationship
;
75 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationshipType
;
76 import eu
.etaxonomy
.cdm
.model
.view
.AuditEvent
;
77 import eu
.etaxonomy
.cdm
.model
.view
.AuditEventRecord
;
78 import eu
.etaxonomy
.cdm
.persistence
.dao
.common
.AuditEventSort
;
79 import eu
.etaxonomy
.cdm
.persistence
.fetch
.CdmFetch
;
80 import eu
.etaxonomy
.cdm
.persistence
.query
.Grouping
;
81 import eu
.etaxonomy
.cdm
.persistence
.query
.MatchMode
;
82 import eu
.etaxonomy
.cdm
.persistence
.query
.OrderHint
;
83 import eu
.etaxonomy
.cdm
.strategy
.cache
.common
.IIdentifiableEntityCacheStrategy
;
84 import eu
.etaxonomy
.cdm
.strategy
.match
.IMatchStrategy
;
85 import eu
.etaxonomy
.cdm
.strategy
.merge
.IMergeStrategy
;
92 public class TransientTaxonService
implements ITaxonService
{
94 private final ITaxonService defaultTaxonService
;
97 * @param defaultTaxonService
99 public TransientTaxonService(ITaxonService defaultTaxonService
) {
100 this.defaultTaxonService
= defaultTaxonService
;
108 * @param propertyPaths
110 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
113 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(TaxonBase t
, Integer pageSize
, Integer pageNumber
, AuditEventSort sort
, List
<String
> propertyPaths
) {
114 return defaultTaxonService
.pageAuditEvents(t
, pageSize
, pageNumber
, sort
, propertyPaths
);
118 * @param annotatedObj
123 * @param propertyPaths
125 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
128 public Pager
<Annotation
> getAnnotations(TaxonBase annotatedObj
, MarkerType status
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
129 return defaultTaxonService
.getAnnotations(annotatedObj
, status
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
134 * @see eu.etaxonomy.cdm.api.service.IService#clear()
137 public void clear() {
138 defaultTaxonService
.clear();
144 * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
147 public void lock(TaxonBase t
, LockMode lockMode
) {
148 defaultTaxonService
.lock(t
, lockMode
);
154 * @param propertyPaths
155 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
158 public void refresh(TaxonBase t
, LockMode lockMode
, List
<String
> propertyPaths
) {
159 defaultTaxonService
.refresh(t
, lockMode
, propertyPaths
);
164 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
167 public void updateTitleCache() {
168 defaultTaxonService
.updateTitleCache();
174 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
177 public AuditEventRecord
<TaxonBase
> getNextAuditEvent(TaxonBase t
) {
178 return defaultTaxonService
.getNextAuditEvent(t
);
182 * @param annotatableEntity
187 * @param propertyPaths
189 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
192 public Pager
<Marker
> getMarkers(TaxonBase annotatableEntity
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
193 return defaultTaxonService
.getMarkers(annotatableEntity
, technical
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
199 * @param cacheStrategy
201 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
204 public void updateTitleCache(Class
<?
extends TaxonBase
> clazz
, Integer stepSize
, IIdentifiableEntityCacheStrategy
<TaxonBase
> cacheStrategy
, IProgressMonitor monitor
) {
205 defaultTaxonService
.updateTitleCache(clazz
, stepSize
, cacheStrategy
, monitor
);
211 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
214 public AuditEventRecord
<TaxonBase
> getPreviousAuditEvent(TaxonBase t
) {
215 return defaultTaxonService
.getPreviousAuditEvent(t
);
221 * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
224 public int count(Class
<?
extends TaxonBase
> clazz
) {
225 return defaultTaxonService
.count(clazz
);
236 * @param propertyPaths
238 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
241 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(Class
<?
extends TaxonBase
> clazz
, AuditEvent from
, AuditEvent to
, List
<AuditCriterion
> criteria
, Integer pageSize
, Integer pageValue
, AuditEventSort sort
, List
<String
> propertyPaths
) {
242 return defaultTaxonService
.pageAuditEvents(clazz
, from
, to
, criteria
, pageSize
, pageValue
, sort
, propertyPaths
);
248 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
251 public TaxonBase
find(LSID lsid
) {
252 return defaultTaxonService
.find(lsid
);
256 * @param persistentObject
258 * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
261 public DeleteResult
delete(TaxonBase persistentObject
) {
262 return defaultTaxonService
.delete(persistentObject
);
270 * @param propertyPaths
272 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
275 public List
<Object
[]> groupMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
276 return defaultTaxonService
.groupMarkers(clazz
, technical
, pageSize
, pageNumber
, propertyPaths
);
282 * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
285 public boolean exists(UUID uuid
) {
286 return defaultTaxonService
.exists(uuid
);
294 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
297 public TaxonBase
replace(TaxonBase x
, TaxonBase y
) {
298 return defaultTaxonService
.replace(x
, y
);
304 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
307 public List
<TaxonBase
> find(Set
<UUID
> uuidSet
) {
308 return defaultTaxonService
.find(uuidSet
);
315 * @param propertyPaths
317 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
320 public Pager
<IdentifiableSource
> getSources(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
321 return defaultTaxonService
.getSources(t
, pageSize
, pageNumber
, propertyPaths
);
327 * @param onlyWithChildren
330 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.reference.Reference, eu.etaxonomy.cdm.persistence.fetch.CdmFetch, boolean)
334 public List
<Taxon
> getRootTaxa(Reference sec
, CdmFetch cdmFetch
, boolean onlyWithChildren
) {
335 return defaultTaxonService
.getRootTaxa(sec
, cdmFetch
, onlyWithChildren
);
341 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
344 public TaxonBase
find(UUID uuid
) {
345 return defaultTaxonService
.find(uuid
);
351 * @param onlyWithChildren
352 * @param withMisapplications
353 * @param propertyPaths
356 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.name.Rank, eu.etaxonomy.cdm.model.reference.Reference, boolean, boolean, java.util.List)
360 public List
<Taxon
> getRootTaxa(Rank rank
, Reference sec
, boolean onlyWithChildren
, boolean withMisapplications
, List
<String
> propertyPaths
) {
361 return defaultTaxonService
.getRootTaxa(rank
, sec
, onlyWithChildren
, withMisapplications
, propertyPaths
);
367 * @see eu.etaxonomy.cdm.api.service.IService#find(int)
370 public TaxonBase
find(int id
) {
371 return defaultTaxonService
.find(id
);
378 * @param propertyPaths
380 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
383 public Pager
<Rights
> getRights(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
384 return defaultTaxonService
.getRights(t
, pageSize
, pageNumber
, propertyPaths
);
391 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
394 public int countMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
) {
395 return defaultTaxonService
.countMarkers(clazz
, technical
);
401 * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
404 public List
<TaxonBase
> findById(Set
<Integer
> idSet
) {
405 return defaultTaxonService
.findById(idSet
);
413 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
416 public ISourceable
getSourcedObjectByIdInSource(Class clazz
, String idInSource
, String idNamespace
) {
417 return defaultTaxonService
.getSourcedObjectByIdInSource(clazz
, idInSource
, idNamespace
);
422 * @see eu.etaxonomy.cdm.api.service.IService#getSession()
425 public Session
getSession() {
426 return defaultTaxonService
.getSession();
431 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
434 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCache() {
435 return defaultTaxonService
.getUuidAndTitleCache();
443 * @param propertyPaths
445 * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
448 public List
<Object
[]> group(Class
<?
extends TaxonBase
> clazz
, Integer limit
, Integer start
, List
<Grouping
> groups
, List
<String
> propertyPaths
) {
449 return defaultTaxonService
.group(clazz
, limit
, start
, groups
, propertyPaths
);
456 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllRelationships(int, int)
459 public List
<RelationshipBase
> getAllRelationships(int limit
, int start
) {
460 return defaultTaxonService
.getAllRelationships(limit
, start
);
471 * @param propertyPaths
473 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
476 public Pager
<TaxonBase
> findByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
477 return defaultTaxonService
.findByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
483 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getTaxonRelationshipTypeVocabulary()
487 public OrderedTermVocabulary
<TaxonRelationshipType
> getTaxonRelationshipTypeVocabulary() {
488 return defaultTaxonService
.getTaxonRelationshipTypeVocabulary();
495 * @see eu.etaxonomy.cdm.api.service.ITaxonService#searchTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)
498 public List
<TaxonBase
> searchTaxaByName(String name
, Reference sec
) {
499 return defaultTaxonService
.searchTaxaByName(name
, sec
);
504 * @param acceptedTaxon
505 * @see eu.etaxonomy.cdm.api.service.ITaxonService#swapSynonymAndAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
508 public void swapSynonymAndAcceptedTaxon(Synonym synonym
, Taxon acceptedTaxon
) {
509 defaultTaxonService
.swapSynonymAndAcceptedTaxon(synonym
, acceptedTaxon
);
517 * @param propertyPaths
519 * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
522 public <S
extends TaxonBase
> List
<S
> list(Class
<S
> type
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
523 return defaultTaxonService
.list(type
, limit
, start
, orderHints
, propertyPaths
);
527 * @param configurator
529 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
532 public Pager
<TaxonBase
> findByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
533 return defaultTaxonService
.findByTitle(configurator
);
538 * @param acceptedTaxon
539 * @param deleteSynonym
540 * @param copyCitationInfo
542 * @param microCitation
544 * @throws HomotypicalGroupChangeException
545 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
548 public Taxon
changeSynonymToAcceptedTaxon(Synonym synonym
, Taxon acceptedTaxon
, boolean deleteSynonym
, boolean copyCitationInfo
, Reference citation
, String microCitation
) throws HomotypicalGroupChangeException
{
549 return defaultTaxonService
.changeSynonymToAcceptedTaxon(synonym
, acceptedTaxon
, deleteSynonym
, copyCitationInfo
, citation
, microCitation
);
558 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
561 public Integer
countByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
) {
562 return defaultTaxonService
.countByTitle(clazz
, queryString
, matchmode
, criteria
);
568 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
571 public TaxonBase
load(UUID uuid
) {
572 return defaultTaxonService
.load(uuid
);
577 * @param propertyPaths
579 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
582 public TaxonBase
load(UUID uuid
, List
<String
> propertyPaths
) {
583 return defaultTaxonService
.load(uuid
, propertyPaths
);
587 * @param configurator
589 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
592 public Integer
countByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
593 return defaultTaxonService
.countByTitle(configurator
);
597 * @param transientObject
599 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
602 public TaxonBase
merge(TaxonBase transientObject
) {
603 return defaultTaxonService
.merge(transientObject
);
614 * @param propertyPaths
616 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
619 public List
<TaxonBase
> listByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
620 return defaultTaxonService
.listByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
628 * @param propertyPaths
630 * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
633 public <S
extends TaxonBase
> Pager
<S
> page(Class
<S
> type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
634 return defaultTaxonService
.page(type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
638 * @param persistentObject
640 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
643 public UUID
refresh(TaxonBase persistentObject
) {
644 return defaultTaxonService
.refresh(persistentObject
);
650 * @param taxonRelationshipType
652 * @param microReference
654 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToRelatedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
657 public Taxon
changeSynonymToRelatedTaxon(Synonym synonym
, Taxon toTaxon
, TaxonRelationshipType taxonRelationshipType
, Reference reference
, String microReference
) {
658 return defaultTaxonService
.changeSynonymToRelatedTaxon(synonym
, toTaxon
, taxonRelationshipType
, reference
, microReference
);
669 * @param propertyPaths
671 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
674 public List
<TaxonBase
> listByReferenceTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
675 return defaultTaxonService
.listByReferenceTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
683 * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
686 public List
<TaxonBase
> rows(String tableName
, int limit
, int start
) {
687 return defaultTaxonService
.rows(tableName
, limit
, start
);
691 * @param newInstances
693 * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
696 public Map
<UUID
, TaxonBase
> save(Collection
<TaxonBase
> newInstances
) {
704 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
707 public long deleteSynonymRelationships(Synonym syn
, Taxon taxon
) {
708 return defaultTaxonService
.deleteSynonymRelationships(syn
, taxon
);
714 * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
717 public UUID
save(TaxonBase newInstance
) {
722 * @param transientObject
724 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
727 public UUID
saveOrUpdate(TaxonBase transientObject
) {
733 * @param newHomotypicalGroup
735 * @param removeFromOtherTaxa
736 * @param setBasionymRelationIfApplicable
737 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeHomotypicalGroupOfSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.name.HomotypicalGroup, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean)
740 public void changeHomotypicalGroupOfSynonym(Synonym synonym
, HomotypicalGroup newHomotypicalGroup
, Taxon targetTaxon
, boolean removeFromOtherTaxa
, boolean setBasionymRelationIfApplicable
) {
741 defaultTaxonService
.changeHomotypicalGroupOfSynonym(synonym
, newHomotypicalGroup
, targetTaxon
, removeFromOtherTaxa
, setBasionymRelationIfApplicable
);
745 * @param transientObjects
747 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
750 public Map
<UUID
, TaxonBase
> saveOrUpdate(Collection
<TaxonBase
> transientObjects
) {
755 * @param transientObject
757 * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
760 public UUID
update(TaxonBase transientObject
) {
761 return defaultTaxonService
.update(transientObject
);
766 * @param includeProperties
770 * @param propertyPaths
772 * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
775 public List
<TaxonBase
> list(TaxonBase example
, Set
<String
> includeProperties
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
776 return defaultTaxonService
.list(example
, includeProperties
, limit
, start
, orderHints
, propertyPaths
);
780 * @param oldSynonymRelation
782 * @param moveHomotypicGroup
783 * @param newSynonymRelationshipType
784 * @param newReference
785 * @param newReferenceDetail
786 * @param keepReference
788 * @throws HomotypicalGroupChangeException
789 * @see eu.etaxonomy.cdm.api.service.ITaxonService#moveSynonymToAnotherTaxon(eu.etaxonomy.cdm.model.taxon.SynonymRelationship, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String, boolean)
792 public SynonymRelationship
moveSynonymToAnotherTaxon(SynonymRelationship oldSynonymRelation
, Taxon newTaxon
, boolean moveHomotypicGroup
, SynonymRelationshipType newSynonymRelationshipType
, Reference newReference
, String newReferenceDetail
, boolean keepReference
) throws HomotypicalGroupChangeException
{
793 return defaultTaxonService
.moveSynonymToAnotherTaxon(oldSynonymRelation
, newTaxon
, moveHomotypicGroup
, newSynonymRelationshipType
, newReference
, newReferenceDetail
, keepReference
);
798 * @param matchStrategy
799 * @param mergeStrategy
801 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
804 public int deduplicate(Class
<?
extends TaxonBase
> clazz
, IMatchStrategy matchStrategy
, IMergeStrategy mergeStrategy
) {
805 return defaultTaxonService
.deduplicate(clazz
, matchStrategy
, mergeStrategy
);
816 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
819 public Pager
<TaxonBase
> findTitleCache(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, MatchMode matchMode
) {
820 return defaultTaxonService
.findTitleCache(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, matchMode
);
829 * @param propertyPaths
831 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
834 public List
<TaxonRelationship
> listToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
835 return defaultTaxonService
.listToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
844 * @param propertyPaths
846 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
849 public Pager
<TaxonRelationship
> pageToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
850 return defaultTaxonService
.pageToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
859 * @param propertyPaths
861 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
864 public List
<TaxonRelationship
> listFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
865 return defaultTaxonService
.listFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
874 * @param propertyPaths
876 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
879 public Pager
<TaxonRelationship
> pageFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
880 return defaultTaxonService
.pageFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
885 * @param includeRelationships
889 * @param propertyPaths
891 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listRelatedTaxa(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List)
894 public Set
<Taxon
> listRelatedTaxa(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Integer maxDepth
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
895 return defaultTaxonService
.listRelatedTaxa(taxon
, includeRelationships
, maxDepth
, limit
, start
, propertyPaths
);
902 * @param propertyPaths
904 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listClassifications(eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
907 public List
<Classification
> listClassifications(TaxonBase taxonBase
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
908 return defaultTaxonService
.listClassifications(taxonBase
, limit
, start
, propertyPaths
);
917 * @param propertyPaths
919 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
922 public Pager
<SynonymRelationship
> getSynonyms(Synonym synonym
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
923 return defaultTaxonService
.getSynonyms(synonym
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
932 * @param propertyPaths
934 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
937 public Pager
<SynonymRelationship
> getSynonyms(Taxon taxon
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
938 return defaultTaxonService
.getSynonyms(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
943 * @param propertyPaths
945 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHomotypicSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
948 public List
<Synonym
> getHomotypicSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
949 return defaultTaxonService
.getHomotypicSynonymsByHomotypicGroup(taxon
, propertyPaths
);
954 * @param propertyPaths
956 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHeterotypicSynonymyGroups(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
959 public List
<List
<Synonym
>> getHeterotypicSynonymyGroups(Taxon taxon
, List
<String
> propertyPaths
) {
960 return defaultTaxonService
.getHeterotypicSynonymyGroups(taxon
, propertyPaths
);
969 * @param propertyPaths
971 * @see eu.etaxonomy.cdm.api.service.ITaxonService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
974 public Pager
<TaxonBase
> search(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
975 return defaultTaxonService
.search(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
981 * @param infragenericEpithet
982 * @param specificEpithet
983 * @param infraspecificEpithet
988 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
991 public Pager
<TaxonBase
> findTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
992 return defaultTaxonService
.findTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
998 * @param infragenericEpithet
999 * @param specificEpithet
1000 * @param infraspecificEpithet
1005 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
1008 public List
<TaxonBase
> listTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
1009 return defaultTaxonService
.listTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
1013 * @param configurator
1015 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNames(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1018 public Pager
<IdentifiableEntity
> findTaxaAndNames(IFindTaxaAndNamesConfigurator configurator
) {
1019 return defaultTaxonService
.findTaxaAndNames(configurator
);
1023 * @param queryString
1024 * @param classification
1026 * @param highlightFragments
1030 * @param propertyPaths
1032 * @throws CorruptIndexException
1033 * @throws IOException
1034 * @throws ParseException
1035 * @throws LuceneMultiSearchException
1037 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByEverythingFullText(java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1041 public Pager
<SearchResult
<TaxonBase
>> findByEverythingFullText(String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1042 return defaultTaxonService
.findByEverythingFullText(queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1047 * @param queryString
1048 * @param classification
1050 * @param highlightFragments
1054 * @param propertyPaths
1056 * @throws CorruptIndexException
1057 * @throws IOException
1058 * @throws ParseException
1059 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1062 public Pager
<SearchResult
<TaxonBase
>> findByFullText(Class
<?
extends TaxonBase
> clazz
, String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1063 return defaultTaxonService
.findByFullText(clazz
, queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1068 * @param statusFilter
1069 * @param classification
1073 * @param propertyPaths
1075 * @throws IOException
1076 * @throws ParseException
1077 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDistribution(java.util.List, java.util.List, eu.etaxonomy.cdm.model.taxon.Classification, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1080 public Pager
<SearchResult
<TaxonBase
>> findByDistribution(List
<NamedArea
> areaFilter
, List
<PresenceAbsenceTermBase
<?
>> statusFilter
, Classification classification
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws IOException
, ParseException
{
1081 return defaultTaxonService
.findByDistribution(areaFilter
, statusFilter
, classification
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1085 * @param searchModes
1086 * @param queryString
1087 * @param classification
1089 * @param distributionStatus
1091 * @param highlightFragments
1095 * @param propertyPaths
1097 * @throws CorruptIndexException
1098 * @throws IOException
1099 * @throws ParseException
1100 * @throws LuceneMultiSearchException
1101 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesByFullText(java.util.EnumSet, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.Set, java.util.Set, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1104 public Pager
<SearchResult
<TaxonBase
>> findTaxaAndNamesByFullText(EnumSet
<TaxaAndNamesSearchMode
> searchModes
, String queryString
, Classification classification
, Set
<NamedArea
> namedAreas
, Set
<PresenceAbsenceTermBase
<?
>> distributionStatus
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1105 return defaultTaxonService
.findTaxaAndNamesByFullText(searchModes
, queryString
, classification
, namedAreas
, distributionStatus
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1110 * @param queryString
1111 * @param classification
1114 * @param highlightFragments
1118 * @param propertyPaths
1120 * @throws CorruptIndexException
1121 * @throws IOException
1122 * @throws ParseException
1123 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDescriptionElementFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1126 public Pager
<SearchResult
<TaxonBase
>> findByDescriptionElementFullText(Class
<?
extends DescriptionElementBase
> clazz
, String queryString
, Classification classification
, List
<Feature
> features
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1127 return defaultTaxonService
.findByDescriptionElementFullText(clazz
, queryString
, classification
, features
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1134 * @param widthOrDuration
1138 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllMedia(eu.etaxonomy.cdm.model.taxon.Taxon, int, int, int, java.lang.String[])
1142 public List
<MediaRepresentation
> getAllMedia(Taxon taxon
, int size
, int height
, int widthOrDuration
, String
[] mimeTypes
) {
1143 return defaultTaxonService
.getAllMedia(taxon
, size
, height
, widthOrDuration
, mimeTypes
);
1148 * @param includeRelationships
1149 * @param limitToGalleries
1150 * @param propertyPath
1153 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxonDescriptionMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, boolean, java.util.List)
1157 public List
<Media
> listTaxonDescriptionMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, boolean limitToGalleries
, List
<String
> propertyPath
) {
1158 return defaultTaxonService
.listTaxonDescriptionMedia(taxon
, includeRelationships
, limitToGalleries
, propertyPath
);
1163 * @param includeRelationships
1164 * @param limitToGalleries
1165 * @param includeTaxonDescriptions
1166 * @param includeOccurrences
1167 * @param includeTaxonNameDescriptions
1168 * @param propertyPath
1170 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.util.List)
1173 public List
<Media
> listMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Boolean limitToGalleries
, Boolean includeTaxonDescriptions
, Boolean includeOccurrences
, Boolean includeTaxonNameDescriptions
, List
<String
> propertyPath
) {
1174 return defaultTaxonService
.listMedia(taxon
, includeRelationships
, limitToGalleries
, includeTaxonDescriptions
, includeOccurrences
, includeTaxonNameDescriptions
, propertyPath
);
1180 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByID(java.util.Set)
1183 public List
<TaxonBase
> findTaxaByID(Set
<Integer
> listOfIDs
) {
1184 return defaultTaxonService
.findTaxaByID(listOfIDs
);
1189 * @param propertyPaths
1191 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxonByUuid(java.util.UUID, java.util.List)
1194 public TaxonBase
findTaxonByUuid(UUID uuid
, List
<String
> propertyPaths
) {
1195 return defaultTaxonService
.findTaxonByUuid(uuid
, propertyPaths
);
1200 * @see eu.etaxonomy.cdm.api.service.ITaxonService#countAllRelationships()
1203 public int countAllRelationships() {
1204 return defaultTaxonService
.countAllRelationships();
1208 * @param propertyPath
1210 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNames(java.util.List)
1213 public List
<TaxonNameBase
> findIdenticalTaxonNames(List
<String
> propertyPath
) {
1214 return defaultTaxonService
.findIdenticalTaxonNames(propertyPath
);
1218 * @param propertyPath
1220 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNameIds(java.util.List)
1223 public List
<TaxonNameBase
> findIdenticalTaxonNameIds(List
<String
> propertyPath
) {
1224 return defaultTaxonService
.findIdenticalTaxonNameIds(propertyPath
);
1230 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getPhylumName(eu.etaxonomy.cdm.model.name.TaxonNameBase)
1233 public String
getPhylumName(TaxonNameBase name
) {
1234 return defaultTaxonService
.getPhylumName(name
);
1240 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym)
1243 public long deleteSynonymRelationships(Synonym syn
) {
1244 return defaultTaxonService
.deleteSynonymRelationships(syn
);
1253 * @param propertyPaths
1256 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listSynonymRelationships(eu.etaxonomy.cdm.model.taxon.TaxonBase, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List, eu.etaxonomy.cdm.model.common.RelationshipBase.Direction)
1259 public List
<SynonymRelationship
> listSynonymRelationships(TaxonBase taxonBase
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
, Direction direction
) {
1260 return defaultTaxonService
.listSynonymRelationships(taxonBase
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
, direction
);
1266 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(java.lang.String)
1269 public Taxon
findBestMatchingTaxon(String taxonName
) {
1270 return defaultTaxonService
.findBestMatchingTaxon(taxonName
);
1276 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
1279 public Taxon
findBestMatchingTaxon(MatchingTaxonConfigurator config
) {
1280 return defaultTaxonService
.findBestMatchingTaxon(config
);
1286 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingSynonym(java.lang.String)
1289 public Synonym
findBestMatchingSynonym(String taxonName
) {
1290 return defaultTaxonService
.findBestMatchingSynonym(taxonName
);
1295 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheTaxon()
1298 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheTaxon() {
1299 return defaultTaxonService
.getUuidAndTitleCacheTaxon();
1304 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheSynonym()
1307 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheSynonym() {
1308 return defaultTaxonService
.getUuidAndTitleCacheSynonym();
1312 * @param configurator
1314 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesForEditor(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1317 public List
<UuidAndTitleCache
<TaxonBase
>> findTaxaAndNamesForEditor(IFindTaxaAndNamesConfigurator configurator
) {
1318 return defaultTaxonService
.findTaxaAndNamesForEditor(configurator
);
1325 * @param doWithMisappliedNames
1327 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, boolean)
1330 public List
<Synonym
> createInferredSynonyms(Taxon taxon
, Classification tree
, SynonymRelationshipType type
, boolean doWithMisappliedNames
) {
1331 return defaultTaxonService
.createInferredSynonyms(taxon
, tree
, type
, doWithMisappliedNames
);
1337 * @param doWithMisappliedNames
1339 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createAllInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, boolean)
1342 public List
<Synonym
> createAllInferredSynonyms(Taxon taxon
, Classification tree
, boolean doWithMisappliedNames
) {
1343 return defaultTaxonService
.createAllInferredSynonyms(taxon
, tree
, doWithMisappliedNames
);
1347 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
1350 public DeleteResult
deleteSynonym(Synonym arg0
, SynonymDeletionConfigurator arg1
) {
1351 return defaultTaxonService
.deleteSynonym(arg0
, arg1
);
1355 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
1358 public DeleteResult
deleteSynonym(Synonym arg0
, Taxon arg1
, SynonymDeletionConfigurator arg2
) {
1359 return defaultTaxonService
.deleteSynonym(arg0
, arg1
, arg2
);
1363 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteTaxon(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.api.service.config.TaxonDeletionConfigurator, eu.etaxonomy.cdm.model.taxon.Classification)
1366 public DeleteResult
deleteTaxon(Taxon arg0
, TaxonDeletionConfigurator arg1
, Classification arg2
) {
1367 return defaultTaxonService
.deleteTaxon(arg0
, arg1
, arg2
);
1371 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
1374 public List
<List
<Synonym
>> getSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
1375 return defaultTaxonService
.getSynonymsByHomotypicGroup(taxon
, propertyPaths
);
1379 public Synonym
changeRelatedTaxonToSynonym(Taxon fromTaxon
, Taxon toTaxon
,
1380 TaxonRelationshipType oldRelationshipType
,
1381 SynonymRelationshipType synonymRelationshipType
)
1382 throws DataChangeNoRollbackException
{
1384 return defaultTaxonService
.changeRelatedTaxonToSynonym(fromTaxon
, toTaxon
, oldRelationshipType
, synonymRelationshipType
);
1388 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1391 public Pager
<Taxon
> pageAcceptedTaxaFor(UUID synonymUuid
, UUID classificationUuid
, Integer pageSize
,
1392 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
1393 return defaultTaxonService
.pageAcceptedTaxaFor(synonymUuid
, classificationUuid
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1397 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1400 public List
<Taxon
> listAcceptedTaxaFor(UUID synonymUuid
, UUID classificationUuid
, Integer pageSize
,
1401 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
1402 return defaultTaxonService
.listAcceptedTaxaFor(synonymUuid
, classificationUuid
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1406 public List
<String
> isDeletable(TaxonBase object
,
1407 DeleteConfiguratorBase config
) {
1408 // TODO Auto-generated method stub
1413 public IncludedTaxaDTO
listIncludedTaxa(UUID taxonUuid
,
1414 IncludedTaxonConfiguration configuration
) {
1415 // TODO Auto-generated method stub
1420 public TaxonBase
findWithoutFlush(UUID uuid
) {
1421 return defaultTaxonService
.findWithoutFlush(uuid
);