eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/derivateSearch/DerivateLabelProvider.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2013 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10 package eu.etaxonomy.taxeditor.view.derivateSearch;
  11
  12 import java.util.List;
  13 import java.util.Set;
  14 import java.util.UUID;
  15
  16 import org.eclipse.jface.viewers.ColumnLabelProvider;
  17 import org.eclipse.jface.viewers.TreeNode;
  18 import org.eclipse.swt.graphics.Image;
  19 import org.hibernate.LazyInitializationException;
  20
  21 import eu.etaxonomy.cdm.api.conversation.ConversationHolder;
  22 import eu.etaxonomy.cdm.api.service.IOccurrenceService;
  23 import eu.etaxonomy.cdm.model.common.DefinedTerm;
  24 import eu.etaxonomy.cdm.model.molecular.DnaSample;
  25 import eu.etaxonomy.cdm.model.molecular.Sequence;
  26 import eu.etaxonomy.cdm.model.molecular.SingleRead;
  27 import eu.etaxonomy.cdm.model.occurrence.Collection;
  28 import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
  29 import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
  30 import eu.etaxonomy.cdm.model.occurrence.GatheringEvent;
  31 import eu.etaxonomy.cdm.model.occurrence.MediaSpecimen;
  32 import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
  33 import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
  34 import eu.etaxonomy.taxeditor.model.ImageResources;
  35 import eu.etaxonomy.taxeditor.store.CdmStore;
  36
  37 /**
  38  * Label provider for the views to show {@link SpecimenOrObservationBase}s.<br>
  39  * <br>
  40  * <b>Note:</b> If you use this label provider you need to assure that you
  41  * created a {@link ConversationHolder} resp. have an open session because
  42  * the labels are generated from various fields of the derivate hierarchy which
  43  * are lazy loaded and could therefore throw a {@link LazyInitializationException}.
  44  */
  45 public class DerivateLabelProvider extends ColumnLabelProvider {
  46
  47     private Set<SingleRead> multiLinkSingleReads;
  48
  49     private static DefinedTerm photoTerm = null;
  50     private static DefinedTerm drawingTerm = null;
  51     private static DefinedTerm specimenScanTerm = null;
  52
  53     private static void initializeTerms() {
  54         List<DefinedTerm> preferredTerms = CdmStore.getTermManager().getPreferredTerms(DefinedTerm.class);
  55         for (DefinedTerm definedTerm : preferredTerms) {
  56             if(definedTerm.getUuid().equals(UUID.fromString("04673952-dab1-42ff-b47a-5e847c350eaf"))){//photo
  57                 photoTerm = definedTerm;
  58             }
  59             else if(definedTerm.getUuid().equals(UUID.fromString("76204a15-098f-4afe-9e8f-fa344ee3fdbb"))){//drawing
  60                 drawingTerm = definedTerm;
  61             }
  62             else if(definedTerm.getUuid().equals(UUID.fromString("c0b127d6-c849-48f9-bbc3-29e3337c1d03"))){//cover TODO temporary until new term is created
  63                 specimenScanTerm = definedTerm;
  64             }
  65         }
  66     }
  67
  68     public static DefinedTerm getLivingPlantPhotoTerm(){
  69         if(photoTerm==null){
  70             initializeTerms();
  71         }
  72         return photoTerm;
  73     }
  74
  75     public static DefinedTerm getArtworkTerm(){
  76         if(drawingTerm==null){
  77             initializeTerms();
  78         }
  79         return drawingTerm;
  80     }
  81
  82     public static DefinedTerm getSpecimenScanTerm(){
  83         if(specimenScanTerm==null){
  84             initializeTerms();
  85         }
  86         return specimenScanTerm;
  87     }
  88
  89
  90     /** {@inheritDoc} */
  91     @Override
  92     public String getText(Object element) {
  93         return getDerivateText(element);
  94     }
  95
  96     /** {@inheritDoc} */
  97     @Override
  98     public String getToolTipText(Object element) {
  99         return getDerivateText(element);
 100     }
 101
 102     /**
 103      *
 104      * @param element
 105      * @return
 106      */
 107     public static String getDerivateText(Object element){
 108         if(element instanceof TreeNode){
 109             //unwrap specimen from TreeNode
 110             element = ((TreeNode) element).getValue();
 111         }
 112
 113         String label = "";
 114         if(element instanceof FieldUnit){
 115             FieldUnit fieldUnit = (FieldUnit)element;
 116             GatheringEvent gatheringEvent = fieldUnit.getGatheringEvent();
 117             if(gatheringEvent!=null){
 118                 label += gatheringEvent.getCountry()!=null?gatheringEvent.getCountry().getLabel()+", ":"";
 119                 label += gatheringEvent.getLocality()!=null?gatheringEvent.getLocality().getText()+", ":"";
 120                 label += gatheringEvent.getGatheringDate()!=null?gatheringEvent.getGatheringDate()+", ":"";
 121                 label += gatheringEvent.getCollector()!=null?gatheringEvent.getCollector()+", ":"";
 122             }
 123             label += fieldUnit.getFieldNumber()!=null?fieldUnit.getFieldNumber():"";
 124         }
 125         else if(element instanceof MediaSpecimen){
 126             MediaSpecimen mediaSpecimen = (MediaSpecimen)element;
 127             label += mediaSpecimen.getMediaSpecimen().getTitle()!=null?mediaSpecimen.getMediaSpecimen().getTitle().getText()+", ":"[no motif]";
 128             label += mediaSpecimen.getMediaSpecimen().getArtist()!=null?mediaSpecimen.getMediaSpecimen().getArtist()+", ":"";
 129             label += mediaSpecimen.getAccessionNumber()!=null?mediaSpecimen.getAccessionNumber()+", ":"";
 130             Collection collection = mediaSpecimen.getCollection();
 131             if(collection!=null){
 132                 label += collection.getName()!=null?collection.getName()+" ":"";
 133             }
 134         }
 135         else if(element instanceof DnaSample
 136                 || (element instanceof DerivedUnit
 137                         && ((SpecimenOrObservationBase<?>) element).getRecordBasis()==SpecimenOrObservationType.DnaSample)){
 138             //TODO implement
 139             label += element.toString();
 140
 141         }
 142         else if(element instanceof DerivedUnit){
 143             DerivedUnit derivedUnit = (DerivedUnit)element;
 144             if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.PreservedSpecimen){
 145                 java.util.Collection<FieldUnit> fieldUnits = CdmStore.getService(IOccurrenceService.class).getFieldUnits(derivedUnit.getUuid());
 146                 if(fieldUnits!=null && !fieldUnits.isEmpty()){
 147                     FieldUnit fieldUnit = fieldUnits.iterator().next();
 148                     GatheringEvent gatheringEvent = fieldUnit.getGatheringEvent();
 149                     if(gatheringEvent!=null){
 150                         label += gatheringEvent.getCollector()!=null?gatheringEvent.getCollector()+", ":"";
 151                     }
 152                     label += fieldUnit.getFieldNumber()!=null?fieldUnit.getFieldNumber()+", ":"";
 153                 }
 154                 Collection collection = derivedUnit.getCollection();
 155                 if(collection!=null){
 156                     label += collection.getName()!=null?collection.getName()+" ":"";
 157                     label += collection.getCode()!=null?"("+collection.getCode()+"), ":"";
 158                 }
 159                 label += derivedUnit.getAccessionNumber()!=null?derivedUnit.getAccessionNumber()+", ":"";
 160                 label += derivedUnit.getBarcode()!=null?derivedUnit.getBarcode():"";
 161             }
 162             else if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.TissueSample){
 163                 //TODO: implement
 164 //                kindofTissue + SampleDesignation
 165             }
 166         }
 167         else if(element instanceof Sequence){
 168             Sequence sequence = (Sequence)element;
 169             label += "SampleDesignation?"+", ";
 170             label += sequence.getDnaMarker()!=null?sequence.getDnaMarker():"";
 171         }
 172         else if(element instanceof SingleRead){
 173             SingleRead singleRead = (SingleRead)element;
 174             label += singleRead.getPrimer()!=null?singleRead.getPrimer().getLabel()+", ":"";
 175             label += "Marker?";
 176         }
 177         else if(element instanceof SpecimenOrObservationBase){
 178             SpecimenOrObservationBase<?> derivate = (SpecimenOrObservationBase<?>) element;
 179             SpecimenOrObservationType type = derivate.getRecordBasis();
 180             return derivate.getTitleCache() + (type!=null?" ["+type.toString()+"]":"");
 181         }
 182         if(label.isEmpty()){
 183             label = element.toString();
 184         }
 185         //remove last comma
 186         else if(label.endsWith(", ")){
 187             label = label.substring(0, label.length()-2);
 188         }
 189         return label;
 190     }
 191
 192     /* (non-Javadoc)
 193      * @see org.eclipse.jface.viewers.ColumnLabelProvider#getImage(java.lang.Object)
 194      */
 195     @Override
 196     public Image getImage(Object element) {
 197         if(element instanceof TreeNode){
 198             element = ((TreeNode) element).getValue();
 199         }
 200         if(element instanceof FieldUnit){
 201             return ImageResources.getImage(ImageResources.FIELD_UNIT);
 202         }
 203         else if(element instanceof DerivedUnit){
 204             DerivedUnit derivedUnit = (DerivedUnit)element;
 205             if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.FieldUnit){
 206                 return ImageResources.getImage(ImageResources.FIELD_UNIT);
 207             }
 208             else if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.DnaSample){
 209                 return ImageResources.getImage(ImageResources.DNA_SAMPLE_DERIVATE);
 210             }
 211             else if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.TissueSample){
 212                 return ImageResources.getImage(ImageResources.TISSUE_SAMPLE_DERIVATE);
 213             }
 214             else if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.PreservedSpecimen){
 215                 return ImageResources.getImage(ImageResources.SPECIMEN_DERIVATE);
 216             }
 217             else if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.StillImage){
 218                 if(derivedUnit.getKindOfUnit()!=null){
 219                     if(derivedUnit.getKindOfUnit().equals(getArtworkTerm())){
 220                         return ImageResources.getImage(ImageResources.ARTWORK_DERIVATE);
 221                     }
 222                     else if(derivedUnit.getKindOfUnit().equals(getLivingPlantPhotoTerm())){
 223                         return ImageResources.getImage(ImageResources.LIVING_PLANT_PHOTO_DERIVATE);
 224                     }
 225                     else if(derivedUnit.getKindOfUnit().equals(getSpecimenScanTerm())){
 226                         return ImageResources.getImage(ImageResources.SPECIMEN_SCAN_DERIVATE);
 227                     }
 228                 }
 229             }
 230         }
 231         else if(element instanceof Sequence){
 232             return ImageResources.getImage(ImageResources.SEQUENCE_DERIVATE);
 233         }
 234
 235         else if(element instanceof SingleRead){
 236             if(multiLinkSingleReads.contains(element)){
 237                 return ImageResources.getImage(ImageResources.SINGLE_READ_DERIVATE_MULTILINK);
 238             }
 239             else{
 240                 return ImageResources.getImage(ImageResources.SINGLE_READ_DERIVATE);
 241             }
 242         }
 243         return super.getImage(element);
 244     }
 245
 246     /**
 247      * @param multiLinkSingleReads2
 248      */
 249     public void setMultiLinkSingleReads(Set<SingleRead> multiLinkSingleReads) {
 250         this.multiLinkSingleReads = multiLinkSingleReads;
 251     }
 252
 253 }