2 * Copyright (C) 2007 EDIT
3 * European Distributed Institute of Taxonomy
4 * http://www.e-taxonomy.eu
6 * The contents of this file are subject to the Mozilla Public License Version 1.1
7 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.preference
;
13 import java
.io
.FileInputStream
;
14 import java
.io
.FileOutputStream
;
15 import java
.io
.IOException
;
17 import java
.net
.URISyntaxException
;
18 import java
.util
.ArrayList
;
19 import java
.util
.Arrays
;
20 import java
.util
.Collections
;
21 import java
.util
.HashMap
;
22 import java
.util
.List
;
24 import java
.util
.Properties
;
26 import java
.util
.StringTokenizer
;
27 import java
.util
.UUID
;
29 import org
.apache
.commons
.lang
.StringUtils
;
30 import org
.apache
.log4j
.Logger
;
31 import org
.eclipse
.equinox
.internal
.p2
.ui
.model
.MetadataRepositoryElement
;
32 import org
.eclipse
.jface
.preference
.IPreferenceStore
;
33 import org
.eclipse
.jface
.window
.Window
;
34 import org
.eclipse
.swt
.widgets
.Composite
;
35 import org
.eclipse
.swt
.widgets
.Control
;
36 import org
.eclipse
.swt
.widgets
.Shell
;
37 import org
.eclipse
.ui
.PlatformUI
;
39 import eu
.etaxonomy
.cdm
.api
.application
.ICdmRepository
;
40 import eu
.etaxonomy
.cdm
.api
.facade
.DerivedUnitFacadeConfigurator
;
41 import eu
.etaxonomy
.cdm
.api
.service
.IFeatureTreeService
;
42 import eu
.etaxonomy
.cdm
.api
.service
.ITermService
;
43 import eu
.etaxonomy
.cdm
.api
.service
.config
.FindTaxaAndNamesConfiguratorImpl
;
44 import eu
.etaxonomy
.cdm
.api
.service
.config
.IFindTaxaAndNamesConfigurator
;
45 import eu
.etaxonomy
.cdm
.common
.CdmUtils
;
46 import eu
.etaxonomy
.cdm
.hibernate
.HibernateProxyHelper
;
47 import eu
.etaxonomy
.cdm
.io
.specimen
.abcd206
.in
.Abcd206ImportConfigurator
;
48 import eu
.etaxonomy
.cdm
.model
.common
.DefinedTermBase
;
49 import eu
.etaxonomy
.cdm
.model
.common
.ICdmBase
;
50 import eu
.etaxonomy
.cdm
.model
.common
.IDefinedTerm
;
51 import eu
.etaxonomy
.cdm
.model
.common
.ISimpleTerm
;
52 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
53 import eu
.etaxonomy
.cdm
.model
.common
.MarkerType
;
54 import eu
.etaxonomy
.cdm
.model
.common
.TermBase
;
55 import eu
.etaxonomy
.cdm
.model
.common
.TermType
;
56 import eu
.etaxonomy
.cdm
.model
.description
.FeatureTree
;
57 import eu
.etaxonomy
.cdm
.model
.metadata
.CdmPreference
;
58 import eu
.etaxonomy
.cdm
.model
.metadata
.CdmPreference
.PrefKey
;
59 import eu
.etaxonomy
.cdm
.model
.metadata
.PreferencePredicate
;
60 import eu
.etaxonomy
.cdm
.model
.metadata
.PreferenceSubject
;
61 import eu
.etaxonomy
.cdm
.model
.name
.NomenclaturalCode
;
62 import eu
.etaxonomy
.cdm
.strategy
.match
.DefaultMatchStrategy
;
63 import eu
.etaxonomy
.cdm
.strategy
.match
.IMatchStrategy
;
64 import eu
.etaxonomy
.cdm
.strategy
.match
.MatchException
;
65 import eu
.etaxonomy
.cdm
.strategy
.match
.MatchMode
;
66 import eu
.etaxonomy
.taxeditor
.model
.AbstractUtility
;
67 import eu
.etaxonomy
.taxeditor
.model
.MessagingUtils
;
68 import eu
.etaxonomy
.taxeditor
.model
.NomenclaturalCodeHelper
;
69 import eu
.etaxonomy
.taxeditor
.store
.CdmStore
;
70 import eu
.etaxonomy
.taxeditor
.store
.TermStore
;
71 import eu
.etaxonomy
.taxeditor
.store
.internal
.TaxeditorStorePlugin
;
72 import eu
.etaxonomy
.taxeditor
.ui
.dialog
.DefaultLanguageDialog
;
76 * PreferencesUtil class.
84 public class PreferencesUtil
implements IPreferenceKeys
{
89 public static final String PREFERRED_TERMS_CHANGE
= "preferred_terms";
91 public static final String P2_REPOSITORIES_DELIM
= ",";
92 public static final String P2_REPOSITORY_FIELDS_DELIM
= ";";
94 private final static Logger logger
= Logger
.getLogger(PreferencesUtil
.class);
103 * @return a {@link org.eclipse.jface.preference.IPreferenceStore} object.
105 public static IPreferenceStore
getPreferenceStore() {
106 return TaxeditorStorePlugin
.getDefault().getPreferenceStore();
111 * setPreferredNomenclaturalCode
114 * @param preferredCode
115 * a {@link eu.etaxonomy.cdm.model.name.NomenclaturalCode}
118 public static CdmPreference
setPreferredNomenclaturalCode(
119 String preferenceKey
, boolean local
) {
121 getPreferenceStore().setValue(PREFERRED_NOMENCLATURAL_CODE_KEY
,
125 ICdmRepository controller
;
126 controller
= CdmStore
.getCurrentApplicationConfiguration();
127 if (controller
== null){
132 key
= CdmPreference
.NewKey(PreferenceSubject
.NewDatabaseInstance(), PreferencePredicate
.NomenclaturalCode
);
133 }catch (Exception e
){
134 System
.out
.println(e
.getStackTrace());
136 CdmPreference preference
= null;
138 if (preferenceKey
== null){
139 preference
= controller
.getPreferenceService().find(key
);
140 if (preference
== null){
143 getPreferenceStore().setValue(PREFERRED_NOMENCLATURAL_CODE_KEY
,
145 getPreferenceStore().setValue(ALLOW_OVERRIDE_NOMENCLATURAL_CODE_KEY
,preference
.isAllowOverride());
149 preference
= CdmPreference
.NewInstance(PreferenceSubject
.NewDatabaseInstance(), PreferencePredicate
.NomenclaturalCode
, preferenceKey
);
150 controller
.getPreferenceService().set(preference
);
160 public static NomenclaturalCode
getPreferredNomenclaturalCode(){
161 if (getPreferenceStore().getBoolean(OVERRIDE_NOMENCLATURAL_CODE_KEY
)) {
162 return getPreferredNomenclaturalCode(true);
164 return getPreferredNomenclaturalCode(false);
170 * getPreferredNomenclaturalCode
173 * @return a {@link eu.etaxonomy.cdm.model.name.NomenclaturalCode} object.
175 public static NomenclaturalCode
getPreferredNomenclaturalCode(boolean useLocal
) {
177 CdmPreference pref
= null;
179 pref
= getPreferenceFromDB(PreferencePredicate
.NomenclaturalCode
);
182 String preferredCode
;
184 preferredCode
= getPreferenceStore().getString(
185 PREFERRED_NOMENCLATURAL_CODE_KEY
);
188 preferredCode
= pref
.getValue();
191 return getPreferredNomenclaturalCode(preferredCode
);
197 * getPreferredNomenclaturalCode
200 * @return a {@link eu.etaxonomy.cdm.model.name.NomenclaturalCode} object.
202 public static NomenclaturalCode
getPreferredNomenclaturalCode(String preferenceKeyNomenclaturalCode
) {
204 for (NomenclaturalCode code
: NomenclaturalCodeHelper
.getAllCodes()) {
205 if (getPreferenceKey(code
).equals(preferenceKeyNomenclaturalCode
)) {
212 public static boolean isShowTaxonAssociations(){
213 if (getPreferenceStore().getBoolean(SHOW_TAXON_ASSOCIATIONS_OVERRIDE
) && getPreferenceStore().getBoolean(SHOW_TAXON_ASSOCIATIONS_ALLOW_OVERRIDE
)) {
214 return getPreferenceStore().getBoolean(SHOW_TAXON_ASSOCIATIONS
);
216 CdmPreference pref
= getPreferenceFromDB(PreferencePredicate
.ShowTaxonAssociations
);
218 return pref
!=null?Boolean
.valueOf(pref
.getValue()):false;
222 public static boolean isShowLifeForm(){
223 if (getPreferenceStore().getBoolean(SHOW_LIFE_FORM_OVERRIDE
) && getPreferenceStore().getBoolean(SHOW_LIFE_FORM_ALLOW_OVERRIDE
)) {
224 return getPreferenceStore().getBoolean(SHOW_LIFE_FORM
);
226 CdmPreference pref
= getPreferenceFromDB(PreferencePredicate
.ShowLifeForm
);
228 return pref
!=null?Boolean
.valueOf(pref
.getValue()):false;
232 public static boolean isDeterminationOnlyForFieldUnits(){
233 if (getPreferenceStore().getBoolean(DETERMINATION_ONLY_FOR_FIELD_UNITS_OVERRIDE
) && getPreferenceStore().getBoolean(DETERMINATIONS_ONLY_FOR_FIELDUNITS_ALLOW_OVERRIDE
)) {
234 return getPreferenceStore().getBoolean(DETERMINATION_ONLY_FOR_FIELD_UNITS
);
236 CdmPreference pref
= getPreferenceFromDB(PreferencePredicate
.DeterminationOnlyForFieldUnits
);
238 return pref
!=null?Boolean
.valueOf(pref
.getValue()):false;
242 public static boolean isCollectingAreaInGeneralSection(){
243 if (getPreferenceStore().getBoolean(SHOW_COLLECTING_AREAS_IN_GENERAL_SECTION_OVERRIDE
) && getPreferenceStore().getBoolean(SHOW_COLLECTING_AREAS_IN_GENERAL_SECTION_ALLOW_OVERRIDE
)) {
244 return getPreferenceStore().getBoolean(SHOW_COLLECTING_AREAS_IN_GENERAL_SECTION
);
246 CdmPreference pref
= getPreferenceFromDB(PreferencePredicate
.ShowCollectingAreasInGeneralSection
);
248 return pref
!=null?Boolean
.valueOf(pref
.getValue()):false;
252 public static boolean isShowSimpleDetailsView(){
253 if (getPreferenceStore().getBoolean(OVERRIDE_NAME_DETAILS
) && getPreferenceStore().getBoolean(ALLOW_OVERRIDE_NAME_DETAILS
)) {
254 return getPreferenceStore().getBoolean(SHOW_SIMPLE_NAME_DETAILS_SECTION
);
256 CdmPreference pref
= getPreferenceFromDB(PreferencePredicate
.NameDetailsView
);
258 return pref
!=null?Boolean
.valueOf(pref
.getValue()):false;
264 public static CdmPreference
getPreferenceFromDB(PreferencePredicate predicate
){
265 ICdmRepository controller
;
266 CdmPreference pref
= null;
269 if(CdmStore
.isActive()){
270 controller
= CdmStore
.getCurrentApplicationConfiguration();
271 PrefKey key
= CdmPreference
.NewKey(PreferenceSubject
.NewTaxEditorInstance(), predicate
);
272 pref
= controller
.getPreferenceService().find(key
);
282 public static void setPreferenceToDB(CdmPreference preference
){
283 ICdmRepository controller
;
285 if(CdmStore
.isActive()){
286 controller
= CdmStore
.getCurrentApplicationConfiguration();
287 controller
.getPreferenceService().set(preference
);
297 public static String
getPreferredDefaultLangugae(){
298 String preferredLanguage
= getPreferenceStore().getString(DEFAULT_LANGUAGE_EDITOR
);
299 if(StringUtils
.isNotEmpty(preferredLanguage
) && StringUtils
.isNotBlank(preferredLanguage
)){
300 return preferredLanguage
;
305 public static boolean isShowMediaPreview(){
306 boolean isShowMediaPreview
= getPreferenceStore().getBoolean(SHOW_MEDIA_PREVIEW
);
307 return isShowMediaPreview
;
311 * Get the match strategy for the given class that was stored in preferences
312 * or the default strategy if it was not stored in preferences
315 * a {@link java.lang.Class} object.
316 * @return a {@link eu.etaxonomy.cdm.strategy.match.IMatchStrategy} object.
318 public static IMatchStrategy
getMatchStrategy(Class clazz
) {
319 String className
= clazz
.getName();
320 if (getPreferenceStore().getBoolean(MATCH_STRATEGY_PREFIX
+ className
)) {
321 IMatchStrategy matchStrategy
= getDefaultMatchStrategy(clazz
);
323 for (String fieldName
: matchStrategy
.getMatchFieldPropertyNames()) {
324 String matchModeName
= getPreferenceStore().getString(
325 getMatchStrategyFieldName(className
, fieldName
));
326 MatchMode matchMode
= MatchMode
.valueOf(matchModeName
);
328 matchStrategy
.setMatchMode(fieldName
, matchMode
);
329 } catch (MatchException e
) {
330 MessagingUtils
.error(PreferencesUtil
.class, e
);
331 throw new RuntimeException(e
);
335 return matchStrategy
;
337 return getDefaultMatchStrategy(clazz
);
341 * Stores a matchStrategy into the preference store.
343 * @param matchStrategy
344 * a {@link eu.etaxonomy.cdm.strategy.match.IMatchStrategy}
347 public static void setMatchStrategy(IMatchStrategy matchStrategy
) {
348 String className
= matchStrategy
.getMatchClass().getName();
349 getPreferenceStore().setValue(MATCH_STRATEGY_PREFIX
+ className
, true);
351 Set
<String
> matchFields
= matchStrategy
.getMatchFieldPropertyNames();
353 for (String fieldName
: matchFields
) {
354 getPreferenceStore().setValue(
355 getMatchStrategyFieldName(className
, fieldName
),
356 matchStrategy
.getMatchMode(fieldName
).name());
361 * Helper method to create the preference property for a match field.
367 private static String
getMatchStrategyFieldName(String className
,
369 return MATCH_STRATEGY_PREFIX
+ className
+ "." + fieldName
;
373 * Returns the default match strategy for a given class.
376 * a {@link java.lang.Class} object.
377 * @return a {@link eu.etaxonomy.cdm.strategy.match.IMatchStrategy} object.
379 public static IMatchStrategy
getDefaultMatchStrategy(Class clazz
) {
380 return DefaultMatchStrategy
.NewInstance(clazz
);
385 * getDateFormatPattern
388 * @return a {@link java.lang.String} object.
390 public static String
getDateFormatPattern() {
391 // TODO make this configurable in properties
392 String pattern
= "Y-M-d H:m";
398 * addTermToPreferredTerms
406 public static <T
extends TermBase
> void addTermToPreferredTerms(T term
) {
408 // VocabularyEnum vocabulary =
409 // VocabularyEnum.getVocabularyEnum(term.getClass());
411 // getPreferenceStore().setValue(getPreferenceKey(term),
412 // VocabularyStore.getTermVocabulary(vocabulary).getTerms().contains(term));
414 // firePreferencesChanged(term.getClass());
418 * Construct a unique key using the CdmBase object's uuid
423 private static String
getPreferenceKey(ICdmBase cdmBase
) {
424 cdmBase
= HibernateProxyHelper
.deproxy(cdmBase
);
426 String key
= cdmBase
.getClass().getName().concat(".")
427 .concat(cdmBase
.getUuid().toString());
428 if (key
.contains("javassist")) {
429 MessagingUtils
.info("proxy");
435 * Construct a unique key using the CdmBase object's uuid
440 public static String
getPreferenceKey(ISimpleTerm simpleTerm
) {
441 simpleTerm
= HibernateProxyHelper
.deproxy(simpleTerm
);
442 String key
= simpleTerm
.getClass().getName().concat(".")
443 .concat(simpleTerm
.getUuid().toString());
444 if (key
.contains("javassist")) {
445 MessagingUtils
.warn(PreferencesUtil
.class,
446 "Trying to persist a preference based on a proxy class.");
454 * Construct a unique key using the CdmBase object's uuid
459 public static String
getPreferenceKey(IDefinedTerm definedTerm
) {
460 definedTerm
= HibernateProxyHelper
.deproxy(definedTerm
);
461 String key
= definedTerm
.getClass().getName().concat(".")
462 .concat(definedTerm
.getUuid().toString());
463 if (key
.contains("javassist")) {
464 MessagingUtils
.warn(PreferencesUtil
.class,
465 "Trying to persist a preference based on a proxy class.");
471 * Retrieves search preferences from the preference store
473 * @return an {@link ITaxonServiceConfigurator} to pass to search methods
475 public static IFindTaxaAndNamesConfigurator
getSearchConfigurator() {
476 IFindTaxaAndNamesConfigurator configurator
= initializeSearchConfigurator();
478 configurator
.setDoTaxa(getPreferenceStore().getBoolean(
479 TAXON_SERVICE_CONFIGURATOR_TAXA
));
480 configurator
.setDoSynonyms(getPreferenceStore().getBoolean(
481 TAXON_SERVICE_CONFIGURATOR_SYNONYMS
));
482 configurator
.setDoNamesWithoutTaxa(getPreferenceStore().getBoolean(
483 TAXON_SERVICE_CONFIGURATOR_NAMES
));
484 configurator
.setDoTaxaByCommonNames(getPreferenceStore().getBoolean(
485 TAXON_SERVICE_CONFIGURATOR_COMMON_NAMES
));
486 //configurator.setMatchMode(eu.etaxonomy.cdm.persistence.query.MatchMode.valueOf(getPreferenceStore().getString(TAXON_SERVICE_CONFIGURATOR_MATCH_MODE)));
492 * create new preferences, setting all search options to true
495 * {@link eu.etaxonomy.cdm.api.service.config.ITaxonServiceConfigurator}
498 public static IFindTaxaAndNamesConfigurator
initializeSearchConfigurator() {
499 IFindTaxaAndNamesConfigurator configurator
= FindTaxaAndNamesConfiguratorImpl
.NewInstance();
501 configurator
.setDoTaxa(true);
502 configurator
.setDoSynonyms(true);
503 configurator
.setDoNamesWithoutTaxa(true);
504 configurator
.setDoTaxaByCommonNames(true);
506 configurator
.setTaxonPropertyPath(Arrays
.asList("$", "titleCache",
507 "name", "name.$", "relationsFromThisTaxon.$"));
509 configurator
.setSynonymPropertyPath(Arrays
.asList("$", "titleCache",
510 "name", "name.$", "synonyms.relatedTo.*"));
513 // match mode is a simple like, actually all other match modes are kind
516 .setMatchMode(eu
.etaxonomy
.cdm
.persistence
.query
.MatchMode
.ANYWHERE
);
517 // we set page number and size here as this should always be unlimited
518 configurator
.setPageNumber(0);
519 // TODO currently limit results to 10000
520 configurator
.setPageSize(10000);
526 * Store search preferences
528 * @param configurator
530 * {@link eu.etaxonomy.cdm.api.service.config.ITaxonServiceConfigurator}
533 public static void setSearchConfigurator(
534 IFindTaxaAndNamesConfigurator configurator
) {
535 getPreferenceStore().setValue(TAXON_SERVICE_CONFIGURATOR_TAXA
,
536 configurator
.isDoTaxa());
537 getPreferenceStore().setValue(TAXON_SERVICE_CONFIGURATOR_SYNONYMS
,
538 configurator
.isDoSynonyms());
539 getPreferenceStore().setValue(TAXON_SERVICE_CONFIGURATOR_NAMES
,
540 configurator
.isDoNamesWithoutTaxa());
541 getPreferenceStore().setValue(TAXON_SERVICE_CONFIGURATOR_COMMON_NAMES
,
542 configurator
.isDoTaxaByCommonNames());
547 * firePreferencesChanged
551 * a {@link java.lang.Class} object.
553 public static void firePreferencesChanged(Class clazz
) {
554 getPreferenceStore().firePropertyChangeEvent(PREFERRED_TERMS_CHANGE
,
559 * Set default values for preferences
561 public static void setDefaults() {
562 getPreferenceStore().setDefault(TAXON_SERVICE_CONFIGURATOR_TAXA
, true);
563 getPreferenceStore().setDefault(TAXON_SERVICE_CONFIGURATOR_SYNONYMS
,
565 getPreferenceStore().setDefault(EDIT_MAP_SERVICE_ACCES_POINT
,
566 "http://edit.africamuseum.be/edit_wp5/v1.2/rest_gen.php");
567 //FIXME : changed default for SHOULD_CONNECT_AT_STARTUP to false (ticket 3828) until resolution
568 getPreferenceStore().setDefault(SHOULD_CONNECT_AT_STARTUP
, false);
569 getPreferenceStore().setDefault(OPENURL_ACCESS_POINT
,
570 "http://www.biodiversitylibrary.org/openurl");
571 getPreferenceStore().setDefault(OPENURL_IMAGE_MAX_WIDTH
, "1000");
572 getPreferenceStore().setDefault(OPENURL_IMAGE_MAX_HEIGHT
, "1000");
573 //Distribution Editor:
574 getPreferenceStore().setDefault(DISTRIBUTION_AREA_PREFRENCES_ACTIVE
, false);
575 getPreferenceStore().setDefault(CHECKLIST_AREA_DISPLAY
, CHECKLIST_AREA_DISPLAY_TITLE
);
576 getPreferenceStore().setDefault(CHECKLIST_SYMBOL
, false);
580 getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_ATOMISED_EPITHETS
, true);
581 getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_AUTHORSHIP_CACHE
, true);
582 getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_AUTHORSHIP
, true);
583 getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_HYBRID
, true);
584 getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_LSID
, true);
585 getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP
, true);
586 getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_NAMECACHE
, true);
587 getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_CODE
, true);
588 getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE
, true);
589 getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS
, true);
590 getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_PROTOLOGUE
, true);
591 getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_RANK
, true);
592 getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION
, true);
593 //Navigator preferences
594 getPreferenceStore().setDefault(SORT_NODES_NATURALLY
, false);
595 getPreferenceStore().setDefault(SORT_NODES_ALPHABETICALLY
, false);
596 getPreferenceStore().setDefault(SORT_TAXA_BY_RANK_AND_NAME
, true);
597 //override db preferences
598 getPreferenceStore().setDefault(ABCD_IMPORT_OVERRIDE
, false);
599 getPreferenceStore().setDefault(SHOW_SPECIMEN_OVERRIDE
, false);
600 getPreferenceStore().setDefault(OVERRIDE_NAME_DETAILS
, false);
601 getPreferenceStore().setDefault(DISTRIBUTION_AREA_PREFRENCES_ACTIVE_OVERRIDE
, false);
603 getPreferenceStore().setDefault(FILTER_COMMON_NAME_REFERENCES
, false);
604 getPreferenceStore().setDefault(SHOW_SPECIMEN
, true);
605 getPreferenceStore().setDefault(SHOW_TAXONNODE_WIZARD
, true);
606 getPreferenceStore().setDefault(SHOW_NAME_IN_SOURCE
, true);
607 getPreferenceStore().setDefault(SHOW_ID_IN_SOURCE
, true);
608 getPreferenceStore().setDefault(DISABLE_MULTI_CLASSIFICATION
, false);
614 * checkNomenclaturalCode
617 public static void checkNomenclaturalCode() {
618 // First time Editor is opened, no nomenclatural code has been set
619 if (PreferencesUtil
.getPreferredNomenclaturalCode(true) == null) {
620 PreferencesUtil
.setPreferredNomenclaturalCode(getPreferenceKey(NomenclaturalCode
.ICNAFP
), true);
626 public static void setNomenclaturalCodePreferences(){
627 ICdmRepository controller
;
628 controller
= CdmStore
.getCurrentApplicationConfiguration();
629 PrefKey key
= CdmPreference
.NewKey(PreferenceSubject
.NewDatabaseInstance(), PreferencePredicate
.NomenclaturalCode
);
630 CdmPreference preference
= null;
631 if (controller
== null){
634 preference
= controller
.getPreferenceService().find(key
);
635 if (preference
== null){
638 getPreferenceStore().setValue(ALLOW_OVERRIDE_NOMENCLATURAL_CODE_KEY
, preference
.isAllowOverride());
640 int index
= StringUtils
.lastIndexOf(preference
.getValue(), ".");
641 UUID uuid
= UUID
.fromString(preference
.getValue().substring(index
+1, preference
.getValue().length()));
642 NomenclaturalCode preferredCode
= NomenclaturalCode
.getByUuid(uuid
);
644 getPreferenceStore().setValue(PREFERRED_NOMENCLATURAL_CODE_KEY
,
645 getPreferenceKey(preferredCode
));
649 public static void checkDefaultLanguage(){
650 if(PreferencesUtil
.getPreferredDefaultLangugae() == null){
651 Shell shell
= AbstractUtility
.getShell();
652 int open
= new DefaultLanguageDialog(shell
).open();
653 if(open
== Window
.OK
){
654 PlatformUI
.getWorkbench().restart();
657 //TODO:In case of a reinstall, the config.ini will be overwritten
658 // here you create config.ini with the stored key from preferences
664 * getMapServiceAccessPoint
667 * @return a {@link java.lang.String} object.
669 public static String
getMapServiceAccessPoint() {
670 return getPreferenceStore().getString(EDIT_MAP_SERVICE_ACCES_POINT
);
675 * shouldConnectAtStartUp
680 public static boolean shouldConnectAtStartUp() {
681 //FIXME : force SHOULD_CONNECT_AT_STARTUP to false (ticket 3828) until resolution
682 //return getPreferenceStore().getBoolean(SHOULD_CONNECT_AT_STARTUP);
688 * getDefaultFeatureTreeForTextualDescription
691 * @return a {@link eu.etaxonomy.cdm.model.description.FeatureTree} object.
693 public static FeatureTree
getDefaultFeatureTreeForTextualDescription() {
694 String uuidString
= getPreferenceStore().getString(
695 FEATURE_TREE_DEFAULT_TEXT
);
696 return CdmUtils
.isEmpty(uuidString
) ?
null : CdmStore
.getService(
697 IFeatureTreeService
.class).load(UUID
.fromString(uuidString
));
702 * getDefaultFeatureTreeForStructuredDescription
705 * @return a {@link eu.etaxonomy.cdm.model.description.FeatureTree} object.
707 public static FeatureTree
getDefaultFeatureTreeForStructuredDescription() {
708 String uuidString
= getPreferenceStore().getString(
709 FEATURE_TREE_DEFAULT_STRUCTURE
);
710 return CdmUtils
.isEmpty(uuidString
) ?
null : CdmStore
.getService(
711 IFeatureTreeService
.class).load(UUID
.fromString(uuidString
));
716 * setSortRanksHierarchichally
722 public static void setSortRanksHierarchichally(boolean selection
) {
723 getPreferenceStore().setValue(SORT_RANKS_HIERARCHICHALLY
, selection
);
728 * getSortRanksHierarchichally
733 public static boolean getSortRanksHierarchichally() {
734 return getPreferenceStore().getBoolean(SORT_RANKS_HIERARCHICHALLY
);
737 public static boolean isMultilanguageTextEditingCapability() {
738 return getPreferenceStore().getBoolean(
739 MULTILANGUAGE_TEXT_EDITING_CAPABILITY
);
742 public static Language
getGlobalLanguage() {
745 String languageUuidString
= getPreferenceStore().getString(
746 GLOBAL_LANGUAGE_UUID
);
748 if(!CdmStore
.isActive()) {
749 MessagingUtils
.noDataSourceWarningDialog(languageUuidString
);
753 if (CdmUtils
.isBlank(languageUuidString
)) {
754 return Language
.getDefaultLanguage();
757 UUID languageUuid
= UUID
.fromString(languageUuidString
);
758 return (Language
) CdmStore
.getService(ITermService
.class).load(
762 public static void setGlobalLanguage(Language language
) {
763 if(language
!= null) {
764 getPreferenceStore().setValue(GLOBAL_LANGUAGE_UUID
,language
.getUuid().toString());
765 CdmStore
.setDefaultLanguage(language
);
773 public static Map
<MarkerType
, Boolean
> getEditMarkerTypePreferences() {
774 List
<MarkerType
> markerTypes
= CdmStore
.getTermManager()
775 .getPreferredTerms(MarkerType
.class);
777 Map
<MarkerType
, Boolean
> result
= new HashMap
<MarkerType
, Boolean
>();
779 for (MarkerType markerType
: markerTypes
) {
780 String name
= getMarkerTypeEditingPreferenceKey(markerType
);
781 Boolean value
= getPreferenceStore().getBoolean(name
);
783 result
.put(markerType
, value
);
790 * @param markerTypeEditingMap
792 public static void setEditMarkerTypePreferences(
793 Map
<MarkerType
, Boolean
> markerTypeEditingMap
) {
794 for (MarkerType markerType
: markerTypeEditingMap
.keySet()) {
795 String name
= getMarkerTypeEditingPreferenceKey(markerType
);
796 getPreferenceStore().setValue(name
,
797 markerTypeEditingMap
.get(markerType
));
802 private static String
getMarkerTypeEditingPreferenceKey(
803 MarkerType markerType
) {
804 markerType
= HibernateProxyHelper
.deproxy(markerType
);
805 return markerType
.getClass().getName() + EDIT_MARKER_TYPE_PREFIX
;
810 * setEditMarkerTypePreference
814 * a {@link org.eclipse.ui.IEditorInput} object.
816 * a {@link eu.etaxonomy.cdm.model.common.MarkerType} object.
820 public static void setEditMarkerTypePreference(MarkerType markerType
,
822 getPreferenceStore().setValue(
823 getMarkerTypeEditingPreferenceKey(markerType
), edit
);
829 public static DerivedUnitFacadeConfigurator
getDerivedUnitConfigurator() {
830 DerivedUnitFacadeConfigurator configurator
= DerivedUnitFacadeConfigurator
832 configurator
.setMoveDerivedUnitMediaToGallery(true);
833 configurator
.setMoveFieldObjectMediaToGallery(true);
838 * This method will write language properties to the config.ini located in the configuration folder
839 * of the Taxonomic Ediitor. <b>This method is only used to set the default language for Taxonomic Editor.</b>
841 * @param setLanguage 0 is for german and 1 for english.
842 * @throws IOException
844 public void writePropertyToConfigFile(int setLanguage
) throws IOException
{
845 File file
= org
.eclipse
.core
.runtime
.preferences
.ConfigurationScope
.INSTANCE
.getLocation().toFile();
846 //give warning to user if the directory has no write access
848 throw new IOException();
850 Properties properties
= load(file
.getAbsolutePath()+"/config.ini");
853 properties
.setProperty("osgi.nl", "de");
854 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.DEFAULT_LANGUAGE_EDITOR
, "de");
857 properties
.setProperty("osgi.nl", "en");
858 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.DEFAULT_LANGUAGE_EDITOR
, "en");
863 save(file
+"/config.ini", properties
);
867 * This method loads a property from a given file and returns it.
871 * @throws IOException
873 private Properties
load(String filename
) throws IOException
{
874 FileInputStream in
= new FileInputStream(filename
);
875 Properties prop
= new Properties();
882 * This method saves a property to the specified file.
886 * @throws IOException
888 private void save(String filename
, Properties properties
) throws IOException
{
889 FileOutputStream fos
= new FileOutputStream(filename
);
890 properties
.store(fos
, "");
895 * Saves a list of P2 Metadata Repositories as string with specified delimiters
899 public static void setP2Repositories(List
<MetadataRepositoryElement
> p2Repos
) {
900 StringBuilder sb
= new StringBuilder();
901 for(MetadataRepositoryElement p2Repo
: p2Repos
) {
902 sb
.append(P2_REPOSITORIES_DELIM
);
903 if(p2Repo
.getName() == null || p2Repo
.getName().isEmpty()) {
906 sb
.append(p2Repo
.getName());
908 sb
.append(P2_REPOSITORY_FIELDS_DELIM
);
909 sb
.append(p2Repo
.getLocation().toString());
910 sb
.append(P2_REPOSITORY_FIELDS_DELIM
);
911 sb
.append(String
.valueOf(p2Repo
.isEnabled()));
913 getPreferenceStore().setValue(P2_REPOSITORY_LIST
, sb
.toString());
918 * Retrieves a list of previously saved P2 repositories
922 public static List
<MetadataRepositoryElement
> getP2Repositories() {
923 List
<MetadataRepositoryElement
> p2Repos
= new ArrayList
<MetadataRepositoryElement
>();
924 String p2ReposPref
= getPreferenceStore().getString(P2_REPOSITORY_LIST
);
925 if(p2ReposPref
!= null && !p2ReposPref
.isEmpty()) {
926 StringTokenizer p2ReposPrefST
= new StringTokenizer(p2ReposPref
,P2_REPOSITORIES_DELIM
);
928 while(p2ReposPrefST
.hasMoreTokens()) {
929 String p2RepoStr
= p2ReposPrefST
.nextToken();
930 StringTokenizer p2ReposStrST
= new StringTokenizer(p2RepoStr
,P2_REPOSITORY_FIELDS_DELIM
);
931 if(p2ReposStrST
.countTokens()==3) {
932 String nickname
= p2ReposStrST
.nextToken();
935 uri
= new URI(p2ReposStrST
.nextToken());
936 } catch (URISyntaxException e
) {
939 boolean enabled
= Boolean
.parseBoolean(p2ReposStrST
.nextToken());
940 MetadataRepositoryElement mre
= new MetadataRepositoryElement(null, uri
, true);
941 mre
.setNickname(nickname
);
942 mre
.setEnabled(enabled
);
952 * enables/disables nested composite. <br>
954 * @param ctrl - Composite to be en-/disabeld
955 * @param enabled - boolean
957 public static void recursiveSetEnabled(Control ctrl
, boolean enabled
) {
958 if (ctrl
instanceof Composite
) {
959 Composite comp
= (Composite
) ctrl
;
960 for (Control c
: comp
.getChildren()) {
961 recursiveSetEnabled(c
, enabled
);
964 ctrl
.setEnabled(enabled
);
970 * getSortRanksNaturally
975 public static boolean getSortNodesNaturally() {
976 return getPreferenceStore().getBoolean(SORT_NODES_NATURALLY
);
981 * setSortRanksNaturally
987 public static void setSortNodesNaturally(boolean selection
) {
988 getPreferenceStore().setValue(SORT_NODES_NATURALLY
, selection
);
994 * getSortRanksNaturally
999 public static boolean getSortNodesStrictlyAlphabetically() {
1000 return getPreferenceStore().getBoolean(SORT_NODES_ALPHABETICALLY
);
1005 * setSortRanksNaturally
1011 public static void setSortNodesStrictlyAlphabetically(boolean selection
) {
1012 getPreferenceStore().setValue(SORT_NODES_ALPHABETICALLY
, selection
);
1017 * setStoreNavigatorState
1023 public static boolean isStoreNavigatorState() {
1024 return getPreferenceStore().getBoolean(RESTORE_NAVIGATOR_STATE
);
1030 * setStoreNavigatorState
1036 public static void setStoreNavigatorState(boolean selection
) {
1037 getPreferenceStore().setValue(RESTORE_NAVIGATOR_STATE
, selection
);
1044 public static boolean isShowUpWidgetIsDisposedMessages() {
1045 return getPreferenceStore().getBoolean(IS_SHOW_UP_WIDGET_IS_DISPOSED
);
1047 public static void setShowUpWidgetIsDisposedMessages(boolean selection
) {
1048 getPreferenceStore().setValue(IS_SHOW_UP_WIDGET_IS_DISPOSED
, selection
);
1054 public static boolean isShowIdInVocabularyInChecklistEditor() {
1055 String area_display
= getPreferenceStore().getString(IPreferenceKeys
.CHECKLIST_AREA_DISPLAY
);
1056 if (area_display
.equals(CHECKLIST_AREA_DISPLAY_ID_IN_VOCABULARY
)) {
1062 public static boolean isShowSymbol1InChecklistEditor() {
1063 String area_display
= getPreferenceStore().getString(IPreferenceKeys
.CHECKLIST_AREA_DISPLAY
);
1064 if (area_display
.equals(CHECKLIST_AREA_DISPLAY_SYMBOL1
)) {
1070 public static boolean isShowSymbol2InChecklistEditor() {
1071 String area_display
= getPreferenceStore().getString(IPreferenceKeys
.CHECKLIST_AREA_DISPLAY
);
1072 if (area_display
.equals(CHECKLIST_AREA_DISPLAY_SYMBOL2
)) {
1078 public static void setShowIdInVocabularyInChecklistEditor(String selection
) {
1079 getPreferenceStore().setValue(CHECKLIST_AREA_DISPLAY
, selection
);
1085 public static boolean isShowSymbolInChecklistEditor() {
1086 return getPreferenceStore().getBoolean(IPreferenceKeys
.CHECKLIST_SYMBOL
);
1088 public static void setShowSymbolInChecklistEditor(boolean selection
) {
1089 getPreferenceStore().setValue(CHECKLIST_SYMBOL
, selection
);
1095 public static boolean isShowRankInChecklistEditor() {
1096 return getPreferenceStore().getBoolean(IPreferenceKeys
.CHECKLIST_SHOW_RANK
);
1098 public static void setShowRankInChecklistEditor(boolean selection
) {
1099 getPreferenceStore().setValue(CHECKLIST_SHOW_RANK
, selection
);
1107 public static NameDetailsConfigurator
getPreferredNameDetailsConfiguration( boolean local
) {
1108 NameDetailsConfigurator config
= new NameDetailsConfigurator(true);
1110 CdmPreference preference
= null;
1113 preference
= getPreferenceFromDB(PreferencePredicate
.NameDetailsView
);
1114 if (preference
== null){
1118 getPreferenceStore().setValue(ALLOW_OVERRIDE_NAME_DETAILS
, preference
.isAllowOverride());
1120 //the preference value is build like this:
1121 //<section1>:true;<section2>:false....
1123 String value
= preference
.getValue();
1124 String
[] sections
= value
.split(";");
1125 Map
<String
, Boolean
> sectionMap
= new HashMap
<String
, Boolean
>();
1126 String
[] sectionValues
;
1127 for (String sectionValue
: sections
){
1128 sectionValues
= sectionValue
.split(":");
1129 sectionMap
.put(sectionValues
[0], Boolean
.valueOf(sectionValues
[1]));
1131 config
.setAllowOverride(preference
.isAllowOverride());
1132 config
.setSimpleDetailsViewActivated(getValue(sectionMap
, "simpleViewActivated"));
1134 // getPreferenceStore().setValue(SHOW_SIMPLE_NAME_DETAILS_TAXON,
1135 // (getValue(sectionMap, "taxon")));
1136 config
.setTaxonSectionActivated(getValue(sectionMap
, "taxon"));
1138 // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_LSID,
1139 // (getValue(sectionMap, "lsid")));
1140 config
.setLSIDActivated(getValue(sectionMap
, "lsid"));
1142 // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_CODE,
1143 // (getValue(sectionMap, "nc")));
1144 config
.setNomenclaturalCodeActived(getValue(sectionMap
, "nc"));
1146 // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_APPENDED_PHRASE,
1147 // (getValue(sectionMap, "ap")));
1148 config
.setAppendedPhraseActivated(getValue(sectionMap
, "ap"));
1150 // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_RANK,
1151 // (getValue(sectionMap, "rank")));
1152 config
.setRankActivated(getValue(sectionMap
, "rank"));
1155 // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_ATOMISED_EPITHETS,
1156 // (getValue(sectionMap, "atomisedEpithets")));
1157 config
.setAtomisedEpithetsActivated(getValue(sectionMap
, "atomisedEpithets"));
1159 // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_AUTHORSHIP,
1160 // (getValue(sectionMap,"author")));
1161 config
.setAuthorshipSectionActivated(getValue(sectionMap
,"author"));
1163 // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE,
1164 // (getValue(sectionMap, "nomRef")));
1165 config
.setNomenclaturalReferenceSectionActivated(sectionMap
.get("nomRef"));
1167 // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS,
1168 // (getValue(sectionMap, "nomStat")));
1169 config
.setNomenclaturalStatusSectionActivated(getValue(sectionMap
, "nomStat"));
1172 // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_PROTOLOGUE,
1173 // (getValue(sectionMap,"protologue")));
1174 config
.setProtologueActivated(getValue(sectionMap
,"protologue"));
1176 // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION,
1177 // (getValue(sectionMap,"typeDes")));
1178 config
.setTypeDesignationSectionActivated(getValue(sectionMap
,"typeDes"));
1180 // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP,
1181 // (getValue(sectionMap,"nameRelation")));
1182 config
.setNameRelationsSectionActivated(getValue(sectionMap
,"nameRelation"));
1184 // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_HYBRID,
1185 // (getValue(sectionMap, "hybrid")));
1186 config
.setHybridActivated(getValue(sectionMap
,"hybrid"));
1188 config
.setSimpleDetailsViewActivated(getPreferenceStore().getBoolean(SHOW_SIMPLE_NAME_DETAILS_SECTION
));
1189 config
.setTaxonSectionActivated(getPreferenceStore().getBoolean(SHOW_SIMPLE_NAME_DETAILS_TAXON
));
1190 config
.setLSIDActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_LSID
));
1191 config
.setNomenclaturalCodeActived(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_CODE
));
1192 config
.setAppendedPhraseActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_APPENDED_PHRASE
));
1193 config
.setRankActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_RANK
));
1194 config
.setAtomisedEpithetsActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_ATOMISED_EPITHETS
));
1195 config
.setAuthorshipSectionActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_AUTHORSHIP
));
1196 config
.setNomenclaturalReferenceSectionActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE
));
1197 config
.setNomenclaturalStatusSectionActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS
));
1198 config
.setProtologueActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_PROTOLOGUE
));
1199 config
.setTypeDesignationSectionActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION
));
1200 config
.setNameRelationsSectionActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP
));
1201 config
.setHybridActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_HYBRID
));
1211 public static void setPreferredNameDetailsConfiguration(NameDetailsConfigurator config
, boolean local
) {
1212 CdmPreference preference
= null;
1215 preference
= CdmPreference
.NewInstance(PreferenceSubject
.NewDatabaseInstance(), PreferencePredicate
.NameDetailsView
, config
.toString());
1217 setPreferenceToDB(preference
);
1219 //also add to local preferences
1220 getPreferenceStore().setValue(SHOW_SIMPLE_NAME_DETAILS_SECTION
, config
.isSimpleDetailsViewActivated());
1221 getPreferenceStore().setValue(SHOW_SIMPLE_NAME_DETAILS_TAXON
, config
.isTaxonSectionActivated());
1222 getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_LSID
, config
.isLSIDActivated());
1223 getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_CODE
, config
.isNomenclaturalCodeActived());
1224 getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_APPENDED_PHRASE
, config
.isAppendedPhraseActivated());
1225 getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_RANK
, config
.isRankActivated());
1226 getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_ATOMISED_EPITHETS
, config
.isAtomisedEpithetsActivated());
1227 getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_AUTHORSHIP
, config
.isAuthorshipSectionActivated());
1228 getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE
, config
.isNomenclaturalReferenceSectionActivated());
1229 getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS
, config
.isNomenclaturalStatusSectionActivated());
1230 getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_PROTOLOGUE
, config
.isProtologueActivated());
1231 getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION
, config
.isTypeDesignationSectionActivated());
1232 getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP
, config
.isNameRelationsSectionActivated());
1233 getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_HYBRID
, config
.isHybridActivated());
1237 private static Boolean
getValue(Map
<String
, Boolean
> sectionMap
, String string
) {
1238 if (sectionMap
.containsKey(string
)){
1239 return sectionMap
.get(string
);
1250 * setAbcdConfigurator
1253 * @param preferredConfiguration
1254 * a {@link eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator}
1257 public static Abcd206ImportConfigurator
getAbcdImportConfigurationPreference() {
1259 Abcd206ImportConfigurator config
= Abcd206ImportConfigurator
.NewInstance(null,null);
1260 ICdmRepository controller
;
1261 controller
= CdmStore
.getCurrentApplicationConfiguration();
1262 PrefKey key
= CdmPreference
.NewKey(PreferenceSubject
.NewTaxEditorInstance(), PreferencePredicate
.AbcdImportConfig
);
1263 CdmPreference preference
= null;
1264 if (controller
== null){
1267 preference
= controller
.getPreferenceService().find(key
);
1268 boolean allowOverride
= true;
1269 if (preference
!= null && !preference
.isAllowOverride()){
1270 allowOverride
= false;
1272 if (PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_OVERRIDE
) && allowOverride
){
1274 config
.setAddIndividualsAssociationsSuchAsSpecimenAndObservations(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_ADD_INDIVIDUALS_ASSOCIATIONS_SUCH_AS_SPECIMEN_AND_OBSERVATIONS
));
1276 config
.setAddMediaAsMediaSpecimen(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_ADD_MEDIA_AS_MEDIASPECIMEN
));
1278 config
.setAllowReuseOtherClassifications(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_ALLOW_REUSE_OTHER_CLASSIFICATIONS
));
1279 config
.setDeduplicateClassifications(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_CLASSIFICATIONS
));
1280 config
.setDeduplicateReferences(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_REFERENCES
));
1282 config
.setGetSiblings(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_DO_SIBLINGS
));
1283 config
.setIgnoreAuthorship(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_IGNORE_AUTHORSHIP
));
1284 config
.setIgnoreImportOfExistingSpecimen(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_IGNORE_IMPORT_OF_EXISTING_SPECIMEN
));
1285 config
.setMapUnitIdToAccessionNumber(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_ACCESSION_NUMBER
));
1286 config
.setMapUnitIdToBarcode(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_BARCODE
));
1287 config
.setMapUnitIdToCatalogNumber(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TOCATALOG_NUMBER
));
1288 config
.setMoveNewTaxaToDefaultClassification(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_MOVE_NEW_TAXA_TO_DEFAULT_CLASSIFICATION
));
1289 config
.setOverwriteExistingSpecimens(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_OVERWRITE_EXISTING_SPECIMEN
));
1290 config
.setReuseExistingDescriptiveGroups(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_DESCRIPTIVE_GROUPS
));
1291 config
.setReuseExistingMetaData(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_META_DATA
));
1292 config
.setReuseExistingTaxaWhenPossible(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_TAXA_WHEN_POSSIBLE
));
1293 config
.setNomenclaturalCode(NomenclaturalCode
.getByKey(PreferencesUtil
.getPreferenceStore().getString(IPreferenceKeys
.ABCD_IMPORT_CONFIGURATOR_NOMENCLATURAL_CODE
)));
1298 if (preference
== null){
1301 String configString
= preference
.getValue();
1302 String
[] configArray
= configString
.split(";");
1304 for (String configItem
: configArray
){
1305 String
[] keyValue
= configItem
.split(":");
1306 String keyString
= keyValue
[0];
1307 String valueString
= keyValue
[1];
1308 if (keyString
.equals("ignoreImportOfExistingSpecimen")){
1309 config
.setIgnoreImportOfExistingSpecimen(Boolean
.valueOf(valueString
));
1310 }else if (keyString
.equals("addIndividualsAssociationsSuchAsSpecimenAndObservations")){
1311 config
.setAddIndividualsAssociationsSuchAsSpecimenAndObservations(Boolean
.valueOf(valueString
));
1312 }else if (keyString
.equals("reuseExistingTaxaWhenPossible")){
1313 config
.setReuseExistingTaxaWhenPossible(Boolean
.valueOf(valueString
));
1314 }else if (keyString
.equals("ignoreAuthorship")){
1315 config
.setIgnoreAuthorship(Boolean
.valueOf(valueString
));
1316 }else if (keyString
.equals("addMediaAsMediaSpecimen")){
1317 config
.setAddMediaAsMediaSpecimen(Boolean
.valueOf(valueString
));
1318 }else if (keyString
.equals("reuseExistingMetaData")){
1319 config
.setReuseExistingMetaData(Boolean
.valueOf(valueString
));
1320 }else if (keyString
.equals("reuseExistingDescriptiveGroups")){
1321 config
.setReuseExistingDescriptiveGroups(Boolean
.valueOf(valueString
));
1322 }else if (keyString
.equals("allowReuseOtherClassifications")){
1323 config
.setAllowReuseOtherClassifications(Boolean
.valueOf(valueString
));
1324 }else if (keyString
.equals("deduplicateReferences")){
1325 config
.setDeduplicateReferences(Boolean
.valueOf(valueString
));
1326 }else if (keyString
.equals("deduplicateClassifications")){
1327 config
.setDeduplicateClassifications(Boolean
.valueOf(valueString
));
1328 }else if (keyString
.equals("moveNewTaxaToDefaultClassification")){
1329 config
.setMoveNewTaxaToDefaultClassification(Boolean
.valueOf(valueString
));
1330 }else if (keyString
.equals("mapUnitIdToCatalogNumber")){
1331 config
.setMapUnitIdToCatalogNumber(Boolean
.valueOf(valueString
));
1332 }else if (keyString
.equals("mapUnitIdToAccessionNumber")){
1333 config
.setMapUnitIdToAccessionNumber(Boolean
.valueOf(valueString
));
1334 }else if (keyString
.equals("mapUnitIdToBarcode")){
1335 config
.setMapUnitIdToBarcode(Boolean
.valueOf(valueString
));
1336 }else if (keyString
.equals("overwriteExistingSpecimens")){
1337 config
.setOverwriteExistingSpecimens(Boolean
.valueOf(valueString
));
1338 }else if (keyString
.equals("nomenclaturalCode")){
1339 config
.setNomenclaturalCode(NomenclaturalCode
.fromString(valueString
));
1341 logger
.debug("This key of the abcd configurator needs to be added to the transformer: " + keyString
);
1350 public static void updateAbcdImportConfigurationPreference() {
1352 Abcd206ImportConfigurator config
= Abcd206ImportConfigurator
.NewInstance(null,null);
1353 ICdmRepository controller
;
1354 controller
= CdmStore
.getCurrentApplicationConfiguration();
1355 PrefKey key
= CdmPreference
.NewKey(PreferenceSubject
.NewTaxEditorInstance(), PreferencePredicate
.AbcdImportConfig
);
1356 CdmPreference preference
= null;
1357 if (controller
== null){
1360 preference
= controller
.getPreferenceService().find(key
);
1361 boolean allowOverride
= true;
1362 if (preference
!= null && !preference
.isAllowOverride()){
1363 allowOverride
= false;
1365 if (!PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.ABCD_IMPORT_OVERRIDE
) || !allowOverride
){
1367 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_ADD_INDIVIDUALS_ASSOCIATIONS_SUCH_AS_SPECIMEN_AND_OBSERVATIONS
, config
.isAddIndividualsAssociationsSuchAsSpecimenAndObservations());
1368 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_ADD_MEDIA_AS_MEDIASPECIMEN
, config
.isAddMediaAsMediaSpecimen());
1370 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_ALLOW_REUSE_OTHER_CLASSIFICATIONS
, config
.isAllowReuseOtherClassifications());
1371 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_CLASSIFICATIONS
, config
.isDeduplicateClassifications());
1372 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_REFERENCES
, config
.isDeduplicateReferences());
1374 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_DO_SIBLINGS
, config
.isGetSiblings());
1375 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_IGNORE_AUTHORSHIP
, config
.isIgnoreAuthorship());
1376 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_IGNORE_IMPORT_OF_EXISTING_SPECIMEN
, config
.isIgnoreImportOfExistingSpecimen());
1377 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_ACCESSION_NUMBER
, config
.isMapUnitIdToAccessionNumber());
1378 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_BARCODE
, config
.isMapUnitIdToBarcode());
1379 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TOCATALOG_NUMBER
, config
.isMapUnitIdToCatalogNumber());
1380 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_MOVE_NEW_TAXA_TO_DEFAULT_CLASSIFICATION
, config
.isMoveNewTaxaToDefaultClassification());
1381 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_OVERWRITE_EXISTING_SPECIMEN
, config
.isOverwriteExistingSpecimens());
1382 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_DESCRIPTIVE_GROUPS
, config
.isReuseExistingDescriptiveGroups());
1383 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_META_DATA
, config
.isReuseExistingMetaData());
1384 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_TAXA_WHEN_POSSIBLE
, config
.isReuseExistingTaxaWhenPossible());
1385 if (config
.getNomenclaturalCode() != null){
1386 getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_NOMENCLATURAL_CODE
, config
.getNomenclaturalCode().getKey());
1395 public NameDetailsConfigurator
createLocalNameDetailsViewConfig(boolean local
) {
1396 NameDetailsConfigurator config
= new NameDetailsConfigurator(true);
1398 config
.setSimpleDetailsViewActivated(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_SIMPLE_NAME_DETAILS_SECTION
));
1399 config
.setAppendedPhraseActivated(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_APPENDED_PHRASE
));
1400 config
.setAtomisedEpithetsActivated(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_ATOMISED_EPITHETS
));
1401 config
.setAuthorshipSectionActivated(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_AUTHORSHIP
));
1402 config
.setLSIDActivated(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_LSID
));
1403 config
.setNameApprobiationActivated(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_NAME_APPROBATION
));
1404 config
.setNameCacheActivated(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_CACHE
));
1405 config
.setNameRelationsSectionActivated(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP
));
1406 config
.setNomenclaturalCodeActived(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_CODE
));
1407 config
.setNomenclaturalStatusSectionActivated(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS
));
1408 config
.setNomenclaturalReferenceSectionActivated(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE
));
1409 config
.setProtologueActivated(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_PROTOLOGUE
));
1410 config
.setRankActivated(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_RANK
));
1411 config
.setTaxonSectionActivated(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_SIMPLE_NAME_DETAILS_TAXON
));
1412 config
.setTypeDesignationSectionActivated(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION
));
1413 config
.setHybridActivated(getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_HYBRID
));
1422 public static void saveConfigToPrefernceStore(NameDetailsConfigurator config
) {
1423 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_SIMPLE_NAME_DETAILS_SECTION
,
1424 config
.isSimpleDetailsViewActivated());
1425 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_SIMPLE_NAME_DETAILS_TAXON
, config
.isTaxonSectionActivated());
1426 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_LSID
, config
.isLSIDActivated());
1427 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_CODE
,
1428 config
.isNomenclaturalCodeActived());
1429 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_NAMECACHE
,
1430 config
.isNameCacheActivated());
1431 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_APPENDED_PHRASE
,
1432 config
.isAppendedPhraseActivated());
1433 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_RANK
, config
.isRankActivated());
1434 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_ATOMISED_EPITHETS
,
1435 config
.isAtomisedEpithetsActivated());
1436 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_AUTHORSHIP_CACHE
,
1437 config
.isAuthorCacheActivated());
1438 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_AUTHORSHIP
,
1439 config
.isAuthorshipSectionActivated());
1440 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE
,
1441 config
.isNomenclaturalReferenceSectionActivated());
1442 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS
,
1443 config
.isNomenclaturalStatusSectionActivated());
1444 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_PROTOLOGUE
,
1445 config
.isProtologueActivated());
1446 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION
,
1447 config
.isTypeDesignationSectionActivated());
1448 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP
,
1449 config
.isNameRelationsSectionActivated());
1450 PreferencesUtil
.getPreferenceStore().setValue(IPreferenceKeys
.SHOW_NAME_DETAILS_SECTION_HYBRID
,
1451 config
.isHybridActivated());
1458 public static boolean isSortTaxaByRankAndName() {
1460 return getPreferenceStore().getBoolean(IPreferenceKeys
.SORT_TAXA_BY_RANK_AND_NAME
);
1466 public static boolean isSortNamedAreaByOrderInVocabulary() {
1468 return getPreferenceStore().getBoolean(IPreferenceKeys
.SORT_NAMED_AREA_BY_VOCABULARY_ORDER
);
1471 public static void setSortNamedAreasByOrderInVocabulary(boolean isSortByVocabularyOrder
) {
1472 getPreferenceStore().setValue(IPreferenceKeys
.SORT_NAMED_AREA_BY_VOCABULARY_ORDER
, isSortByVocabularyOrder
);
1478 * setPreferredNamedAreasForDistributionEditor
1481 * @param saveCheckedElements
1482 * @param saveGrayedElements
1484 public static void setLastSelectedReference(
1485 List
<String
> lastSelectedReferences
) {
1487 IPreferenceStore preferenceStore
= PreferencesUtil
.getPreferenceStore();
1488 preferenceStore
.setValue(PreferencesUtil
.LAST_SELECTED_REFERENCES
, lastSelectedReferences
.toString());
1493 * setPreferredNamedAreasForDistributionEditor
1496 * @param saveCheckedElements
1497 * @param saveGrayedElements
1499 public static List
<String
> getLastSelectedReferences() {
1501 IPreferenceStore preferenceStore
= PreferencesUtil
.getPreferenceStore();
1502 String lastSelected
= preferenceStore
.getString(PreferencesUtil
.LAST_SELECTED_REFERENCES
);
1503 List
<String
> result
= new ArrayList
<>();
1504 if (!StringUtils
.isBlank(lastSelected
)){
1505 Collections
.addAll(result
, lastSelected
.substring(1,lastSelected
.length()-1).split(", "));
1513 * setPreferredNamedAreasForDistributionEditor
1516 * @param saveCheckedElements
1517 * @param saveGrayedElements
1519 public static void setPreferredNamedAreasForDistributionEditor(
1520 String saveCheckedElements
, String saveGrayedElements
, boolean local
) {
1522 IPreferenceStore preferenceStore
= PreferencesUtil
.getPreferenceStore();
1523 preferenceStore
.setValue(PreferencesUtil
.DISTRIBUTION_AREA_OCCURENCE_STATUS
, saveCheckedElements
);
1524 preferenceStore
.setValue(PreferencesUtil
.DISTRIBUTION_AREA_OCCURENCE_STATUS_GRAYED
, saveGrayedElements
);
1528 CdmPreference preference
= null;
1530 if (saveCheckedElements
== null){
1531 preference
= getPreferenceFromDB(PreferencePredicate
.AvailableDistributionAreaTerms
);
1533 if (preference
== null){
1536 getPreferenceStore().setValue(DISTRIBUTION_AREA_OCCURENCE_STATUS
,
1537 saveCheckedElements
);
1538 preference
= CdmPreference
.NewInstance(PreferenceSubject
.NewTaxEditorInstance(), PreferencePredicate
.AvailableDistributionAreaTerms
, saveCheckedElements
);
1539 setPreferenceToDB(preference
);
1543 preference
= CdmPreference
.NewInstance(PreferenceSubject
.NewTaxEditorInstance(), PreferencePredicate
.AvailableDistributionAreaTerms
, saveCheckedElements
);
1544 setPreferenceToDB(preference
);
1545 getPreferenceStore().setValue(DISTRIBUTION_AREA_OCCURENCE_STATUS
,
1546 saveCheckedElements
);
1554 * @param saveCheckedElements
1555 * @param saveCheckedElements2
1558 public static void setPreferredVocabulariesForDistributionEditor(String saveCheckedElements
,
1561 IPreferenceStore preferenceStore
= PreferencesUtil
.getPreferenceStore();
1562 preferenceStore
.setValue(PreferencesUtil
.DISTRIBUTION_VOCABULARIES
, saveCheckedElements
);
1565 ICdmRepository controller
;
1566 CdmPreference preference
= null;
1568 if (saveCheckedElements
== null){
1569 preference
= getPreferenceFromDB(PreferencePredicate
.AvailableDistributionAreaVocabularies
);
1571 if (preference
== null){
1574 getPreferenceStore().setValue(DISTRIBUTION_VOCABULARIES
,
1575 saveCheckedElements
);
1576 preference
= CdmPreference
.NewInstance(PreferenceSubject
.NewTaxEditorInstance(), PreferencePredicate
.AvailableDistributionAreaVocabularies
, saveCheckedElements
);
1577 setPreferenceToDB(preference
);
1580 preference
= CdmPreference
.NewInstance(PreferenceSubject
.NewTaxEditorInstance(), PreferencePredicate
.AvailableDistributionAreaVocabularies
, saveCheckedElements
);
1581 setPreferenceToDB(preference
);
1582 getPreferenceStore().setValue(DISTRIBUTION_VOCABULARIES
,
1583 saveCheckedElements
);
1593 * @param saveCheckedElements
1594 * @param saveCheckedElements2
1597 public static String
getPreferredVocabulariesForDistributionEditor(boolean local
) {
1599 IPreferenceStore preferenceStore
= PreferencesUtil
.getPreferenceStore();
1600 String pref
= preferenceStore
.getString(DISTRIBUTION_VOCABULARIES
);
1604 CdmPreference preference
= null;
1605 preference
= getPreferenceFromDB(PreferencePredicate
.AvailableDistributionAreaVocabularies
);
1606 if (preference
== null){
1609 return preference
.getValue();
1618 public static boolean getFilterCommonNameReferences(){
1619 return getPreferenceStore().getBoolean(PreferencesUtil
.FILTER_COMMON_NAME_REFERENCES
);
1625 public static void updateDBPreferences() {
1626 CdmPreference preference
= null;
1627 IPreferenceStore prefStore
= getPreferenceStore();
1631 updateAbcdImportConfigurationPreference();
1633 preference
= getPreferenceFromDB(PreferencePredicate
.ShowImportExportMenu
);
1634 if (preference
!= null){
1635 if(!prefStore
.getBoolean(SHOW_IO_MENU
) || !preference
.isAllowOverride()){
1636 prefStore
.setValue(SHOW_IO_MENU
, preference
.getValue());
1639 prefStore
.setValue(SHOW_IO_MENU
, true);
1642 preference
= getPreferenceFromDB(PreferencePredicate
.ShowMediaView
);
1643 if (preference
!= null){
1644 if(!prefStore
.getBoolean(SHOW_MEDIA
) || !preference
.isAllowOverride()){
1645 prefStore
.setValue(SHOW_MEDIA
, preference
.getValue());
1648 prefStore
.setValue(SHOW_MEDIA
, true);
1651 preference
= getPreferenceFromDB(PreferencePredicate
.ShowChecklistPerspective
);
1652 if (preference
!= null){
1653 if(!prefStore
.getBoolean(SHOW_CHECKLIST_PERSPECTIVE
) || !preference
.isAllowOverride()){
1654 prefStore
.setValue(SHOW_CHECKLIST_PERSPECTIVE
, preference
.getValue());
1657 prefStore
.setValue(SHOW_CHECKLIST_PERSPECTIVE
, false);
1661 preference
= getPreferenceFromDB(PreferencePredicate
.ShowSpecimen
);
1662 if (preference
!= null){
1663 if(!prefStore
.getBoolean(SHOW_SPECIMEN
) || !preference
.isAllowOverride()){
1664 prefStore
.setValue(SHOW_SPECIMEN
, preference
.getValue());
1667 prefStore
.setValue(SHOW_SPECIMEN
, true);
1670 preference
= getPreferenceFromDB(PreferencePredicate
.ShowTaxonAssociations
);
1671 if (preference
!= null){
1672 if(!prefStore
.getBoolean(SHOW_TAXON_ASSOCIATIONS_OVERRIDE
) || !preference
.isAllowOverride()){
1673 prefStore
.setValue(SHOW_TAXON_ASSOCIATIONS
, preference
.getValue());
1676 preference
= getPreferenceFromDB(PreferencePredicate
.ShowCollectingAreasInGeneralSection
);
1677 if (preference
!= null){
1678 if(!prefStore
.getBoolean(SHOW_COLLECTING_AREAS_IN_GENERAL_SECTION_OVERRIDE
) || !preference
.isAllowOverride()){
1679 prefStore
.setValue(SHOW_COLLECTING_AREAS_IN_GENERAL_SECTION
, preference
.getValue());
1682 preference
= getPreferenceFromDB(PreferencePredicate
.ShowLifeForm
);
1683 if (preference
!= null){
1684 if(!prefStore
.getBoolean(SHOW_LIFE_FORM_OVERRIDE
) || !preference
.isAllowOverride()){
1685 prefStore
.setValue(SHOW_LIFE_FORM
, preference
.getValue());
1688 preference
= getPreferenceFromDB(PreferencePredicate
.DeterminationOnlyForFieldUnits
);
1689 if (preference
!= null){
1690 if(!prefStore
.getBoolean(DETERMINATION_ONLY_FOR_FIELD_UNITS_OVERRIDE
) || !preference
.isAllowOverride()){
1691 prefStore
.setValue(DETERMINATION_ONLY_FOR_FIELD_UNITS
, preference
.getValue());
1697 NameDetailsConfigurator config
= getPreferredNameDetailsConfiguration(false);
1698 if (config
!= null ){
1699 if (!prefStore
.getBoolean(OVERRIDE_NAME_DETAILS
) || !prefStore
.getBoolean(ALLOW_OVERRIDE_NAME_DETAILS
)){
1700 setPreferredNameDetailsConfiguration(config
, false);
1704 //Distribution Editor
1705 preference
= getPreferenceFromDB(PreferencePredicate
.AvailableDistributionAreaVocabularies
);
1706 if (preference
!= null){
1707 if (!prefStore
.getBoolean(DISTRIBUTION_AREA_PREFRENCES_ACTIVE_OVERRIDE
) || !preference
.isAllowOverride()){
1708 prefStore
.setValue(DISTRIBUTION_VOCABULARIES
, preference
.getValue());
1712 preference
= getPreferenceFromDB(PreferencePredicate
.DistributionEditorActivated
);
1713 if (preference
!= null){
1714 if (!prefStore
.getBoolean(DISTRIBUTION_AREA_PREFRENCES_ACTIVE_OVERRIDE
) || !preference
.isAllowOverride()){
1715 prefStore
.setValue(DISTRIBUTION_AREA_PREFRENCES_ACTIVE
, preference
.getValue());
1719 preference
= getPreferenceFromDB(PreferencePredicate
.AvailableDistributionStatus
);
1720 if (preference
!= null){
1721 if (!prefStore
.getBoolean(DISTRIBUTION_STATUS_OVERRIDE
) || !preference
.isAllowOverride()){
1722 //get terms for the uuids... and add them to the termManager as preferred terms
1723 ITermService termService
= CdmStore
.getService(ITermService
.class);
1724 String
[] uuidArray
= preference
.getValue().split(";");
1725 List
<UUID
> uuidList
= new ArrayList();
1726 for (String uuidString
:uuidArray
){
1727 uuidList
.add(UUID
.fromString(uuidString
));
1730 List
<DefinedTermBase
> definedTermBases
= termService
.load(uuidList
, null);
1731 CdmStore
.getTermManager().setPreferredTerms(definedTermBases
, TermStore
.getTerms(TermType
.PresenceAbsenceTerm
, null));
1735 preference
= getPreferenceFromDB(PreferencePredicate
.CommonNameAreaVocabularies
);
1736 if (preference
!= null){
1737 if (!prefStore
.getBoolean(COMMON_NAME_AREA_VOCABULARIES_OVERRIDE
) || !preference
.isAllowOverride()){
1738 prefStore
.setValue(COMMON_NAME_AREA_VOCABULARIES
, preference
.getValue());
1742 preference
= getPreferenceFromDB(PreferencePredicate
.CommonNameReferencesWithMarker
);
1743 if (preference
!= null){
1744 if (!prefStore
.getBoolean(FILTER_COMMON_NAME_REFERENCES
) || !preference
.isAllowOverride()){
1745 prefStore
.setValue(FILTER_COMMON_NAME_REFERENCES
, preference
.getValue());
1748 prefStore
.setValue(FILTER_COMMON_NAME_REFERENCES
, false);
1752 preference
= getPreferenceFromDB(PreferencePredicate
.ShowTaxonNodeWizard
);
1753 if (preference
!= null){
1754 if (!prefStore
.getBoolean(SHOW_TAXONNODE_WIZARD
) || !preference
.isAllowOverride()){
1755 prefStore
.setValue(SHOW_TAXONNODE_WIZARD
, preference
.getValue());
1758 prefStore
.setValue(SHOW_TAXONNODE_WIZARD
, true);
1761 preference
= getPreferenceFromDB(PreferencePredicate
.ShowIdInSource
);
1762 if (preference
!= null){
1763 if (!prefStore
.getBoolean(SHOW_ID_IN_SOURCE
) || !preference
.isAllowOverride()){
1764 prefStore
.setValue(SHOW_ID_IN_SOURCE
, preference
.getValue());
1767 prefStore
.setValue(SHOW_ID_IN_SOURCE
, true);
1770 preference
= getPreferenceFromDB(PreferencePredicate
.ShowNameInSource
);
1771 if (preference
!= null){
1772 if (!prefStore
.getBoolean(SHOW_NAME_IN_SOURCE
) || !preference
.isAllowOverride()){
1773 prefStore
.setValue(SHOW_NAME_IN_SOURCE
, preference
.getValue());
1776 prefStore
.setValue(SHOW_NAME_IN_SOURCE
, true);
1779 preference
= getPreferenceFromDB(PreferencePredicate
.DisableMultiClassification
);
1780 if (preference
!= null){
1781 if (!prefStore
.getBoolean(DISABLE_MULTI_CLASSIFICATION
) || !preference
.isAllowOverride()){
1782 prefStore
.setValue(DISABLE_MULTI_CLASSIFICATION
, preference
.getValue());
1785 prefStore
.setValue(DISABLE_MULTI_CLASSIFICATION
, false);