3 * Copyright (C) 2014 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.dna
;
12 import eu
.etaxonomy
.cdm
.model
.common
.DefinedTerm
;
13 import eu
.etaxonomy
.cdm
.model
.molecular
.Primer
;
14 import eu
.etaxonomy
.cdm
.model
.molecular
.SequenceString
;
15 import eu
.etaxonomy
.cdm
.model
.reference
.Reference
;
16 import eu
.etaxonomy
.taxeditor
.ui
.combo
.TermComboElement
;
17 import eu
.etaxonomy
.taxeditor
.ui
.element
.CdmFormFactory
;
18 import eu
.etaxonomy
.taxeditor
.ui
.element
.ICdmFormElement
;
19 import eu
.etaxonomy
.taxeditor
.ui
.element
.TextWithLabelElement
;
20 import eu
.etaxonomy
.taxeditor
.ui
.section
.AbstractCdmDetailElement
;
21 import eu
.etaxonomy
.taxeditor
.ui
.selection
.EntitySelectionElement
;
28 public class PrimerGeneralDetailElement
extends AbstractCdmDetailElement
<Primer
> {
31 private TextWithLabelElement textPrimerName
;
32 //TODO we are using a basic text field which is backed up by a Sequence object modelwise.
33 // This is a bit of a overhead as we may just need the sequence string. This may change in future in both directions:
34 // either extending this view to support the remaining fields of Sequence or by switching to the more basic SequenceString model element
35 private TextWithLabelElement textPrimerSequence
;
36 private TermComboElement
<DefinedTerm
> comboMarker
;
38 * free text notes field is backed up by an annotation
40 private TextWithLabelElement textNotes
;
41 private EntitySelectionElement
<Reference
> selectionReference
;
47 public PrimerGeneralDetailElement(CdmFormFactory formFactory
, ICdmFormElement formElement
) {
48 super(formFactory
, formElement
);
55 * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
56 * (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
59 protected void createControls(ICdmFormElement formElement
, Primer entity
, int style
) {
60 textPrimerName
= formFactory
.createTextWithLabelElement(formElement
, "Primer Name", entity
.getLabel(), style
);
61 String sequenceString
= "";
62 if(entity
.getSequence()!=null){
63 sequenceString
= entity
.getSequence().getString();
65 textPrimerSequence
= formFactory
.createTextWithLabelElement(formElement
, "Primer seq. 5'->3'", sequenceString
, style
);
69 selectionReference
= formFactory
70 .createSelectionElement(Reference
.class,
71 getConversationHolder(), formElement
, "Reference",
72 entity
.getPublishedIn(),
73 EntitySelectionElement
.ALL
, style
);
80 * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
84 public void handleEvent(Object eventSource
) {
85 if(eventSource
==textPrimerName
){
86 getEntity().setLabel(textPrimerName
.getText());
88 else if(eventSource
==textPrimerSequence
){
89 SequenceString sequenceString
= getEntity().getSequence();
90 if(sequenceString
==null){
91 sequenceString
= SequenceString
.NewInstance("");
92 getEntity().setSequence(sequenceString
);
94 sequenceString
.setString(textPrimerSequence
.getText());
96 else if(eventSource
==selectionReference
){
97 getEntity().setPublishedIn(selectionReference
.getSelection());