eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/detail/DetailsViewer.java

   1
   2 // $Id$
   3 /**
   4  * Copyright (C) 2011 EDIT
   5  * European Distributed Institute of Taxonomy
   6  * http://www.e-taxonomy.eu
   7  *
   8  * The contents of this file are subject to the Mozilla Public License Version 1.1
   9  * See LICENSE.TXT at the top of this package for the full license terms.
  10  */
  11
  12 package eu.etaxonomy.taxeditor.view.detail;
  13
  14 import java.util.Set;
  15
  16 import org.eclipse.jface.viewers.ISelection;
  17 import org.eclipse.jface.viewers.SelectionChangedEvent;
  18 import org.eclipse.jface.viewers.TreeNode;
  19 import org.eclipse.swt.SWT;
  20 import org.eclipse.swt.widgets.Composite;
  21 import org.eclipse.ui.forms.widgets.ExpandableComposite;
  22
  23 import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
  24 import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
  25 import eu.etaxonomy.cdm.ext.occurrence.gbif.GbifResponse;
  26 import eu.etaxonomy.cdm.model.agent.Person;
  27 import eu.etaxonomy.cdm.model.agent.Team;
  28 import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
  29 import eu.etaxonomy.cdm.model.common.DefinedTermBase;
  30 import eu.etaxonomy.cdm.model.common.Group;
  31 import eu.etaxonomy.cdm.model.common.Marker;
  32 import eu.etaxonomy.cdm.model.common.TermVocabulary;
  33 import eu.etaxonomy.cdm.model.common.User;
  34 import eu.etaxonomy.cdm.model.description.CategoricalData;
  35 import eu.etaxonomy.cdm.model.description.DescriptionBase;
  36 import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
  37 import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
  38 import eu.etaxonomy.cdm.model.description.SpecimenDescription;
  39 import eu.etaxonomy.cdm.model.media.Media;
  40 import eu.etaxonomy.cdm.model.molecular.DnaSample;
  41 import eu.etaxonomy.cdm.model.molecular.Sequence;
  42 import eu.etaxonomy.cdm.model.molecular.SingleRead;
  43 import eu.etaxonomy.cdm.model.name.NonViralName;
  44 import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
  45 import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
  46 import eu.etaxonomy.cdm.model.occurrence.MediaSpecimen;
  47 import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
  48 import eu.etaxonomy.cdm.model.reference.Reference;
  49 import eu.etaxonomy.cdm.model.taxon.TaxonBase;
  50 import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
  51 import eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap;
  52 import eu.etaxonomy.taxeditor.model.AbstractUtility;
  53 import eu.etaxonomy.taxeditor.model.FeatureNodeContainer;
  54 import eu.etaxonomy.taxeditor.model.IDerivedUnitFacadePart;
  55 import eu.etaxonomy.taxeditor.model.MessagingUtils;
  56 import eu.etaxonomy.taxeditor.model.PolytomousKeyRelationship;
  57 import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
  58 import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
  59 import eu.etaxonomy.taxeditor.store.UsageTermCollection;
  60 import eu.etaxonomy.taxeditor.ui.element.AbstractFormSection;
  61 import eu.etaxonomy.taxeditor.ui.element.RootElement;
  62 import eu.etaxonomy.taxeditor.ui.section.agent.PersonDetailSection;
  63 import eu.etaxonomy.taxeditor.ui.section.agent.TeamDetailSection;
  64 import eu.etaxonomy.taxeditor.ui.section.agent.TeamOrPersonBaseDetailSection;
  65 import eu.etaxonomy.taxeditor.ui.section.common.ReferencedEntityDetailSection;
  66 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionDetailSection;
  67 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementDetailSection;
  68 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementMediaSection;
  69 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementSourceSection;
  70 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionSourceSection;
  71 import eu.etaxonomy.taxeditor.ui.section.description.MediaDetailsSection;
  72 import eu.etaxonomy.taxeditor.ui.section.description.NaturalLanguageSection;
  73 import eu.etaxonomy.taxeditor.ui.section.description.ScopeSection;
  74 import eu.etaxonomy.taxeditor.ui.section.feature.FeatureDistributionDetailSection;
  75 import eu.etaxonomy.taxeditor.ui.section.grantedAuthority.GrantedAuthorityDetailSection;
  76 import eu.etaxonomy.taxeditor.ui.section.group.GroupDetailSection;
  77 import eu.etaxonomy.taxeditor.ui.section.group.MemberDetailSection;
  78 import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyDetailSection;
  79 import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyNodeDetailSection;
  80 import eu.etaxonomy.taxeditor.ui.section.name.NameRelationshipDetailSection;
  81 import eu.etaxonomy.taxeditor.ui.section.name.NomenclaturalStatusSection;
  82 import eu.etaxonomy.taxeditor.ui.section.name.NonViralNameDetailSection;
  83 import eu.etaxonomy.taxeditor.ui.section.name.ProtologueSection;
  84 import eu.etaxonomy.taxeditor.ui.section.name.TypeDesignationSection;
  85 import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitBaseDetailSection;
  86 import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitGeneralDetailSection;
  87 import eu.etaxonomy.taxeditor.ui.section.occurrence.DeterminationDetailSection;
  88 import eu.etaxonomy.taxeditor.ui.section.occurrence.EmptySection;
  89 import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitDetailSection;
  90 import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitGeneralDetailSection;
  91 import eu.etaxonomy.taxeditor.ui.section.occurrence.GatheringEventDetailSection;
  92 import eu.etaxonomy.taxeditor.ui.section.occurrence.association.DerivedUnitTypeDesignationSection;
  93 import eu.etaxonomy.taxeditor.ui.section.occurrence.association.TaxonAssociationDetailSection;
  94 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaQualityDetailSection;
  95 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSampleGeneralDetailSection;
  96 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSamplePreparationPreservationSection;
  97 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SampleDesignationDetailSection;
  98 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceContigFileCollectionDetailSection;
  99 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceGeneralDetailSection;
 100 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceReferenceCollectionDetailSection;
 101 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadGeneralDetailSection;
 102 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadPherogramCollectionDetailSection;
 103 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.TissueSampleGeneralDetailSection;
 104 import eu.etaxonomy.taxeditor.ui.section.occurrence.media.MediaSpecimenGeneralDetailSection;
 105 import eu.etaxonomy.taxeditor.ui.section.reference.NomenclaturalReferenceDetailSection;
 106 import eu.etaxonomy.taxeditor.ui.section.reference.ReferenceDetailSection;
 107 import eu.etaxonomy.taxeditor.ui.section.supplemental.RightsSection;
 108 import eu.etaxonomy.taxeditor.ui.section.supplemental.identifier.DerivedUnitFacadeIdentifierSection;
 109 import eu.etaxonomy.taxeditor.ui.section.taxon.ParsingMessagesSection;
 110 import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonBaseDetailSection;
 111 import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonRelationshipDetailSection;
 112 import eu.etaxonomy.taxeditor.ui.section.user.GroupsByUserDetailSection;
 113 import eu.etaxonomy.taxeditor.ui.section.user.UserDetailSection;
 114 import eu.etaxonomy.taxeditor.ui.section.userecords.UseRecordDetailSection;
 115 import eu.etaxonomy.taxeditor.ui.section.vocabulary.TermVocabularyDetailSection;
 116 import eu.etaxonomy.taxeditor.view.AbstractCdmDataViewer;
 117 import eu.etaxonomy.taxeditor.view.AbstractCdmViewPart;
 118
 119 /**
 120  *
 121  * The DetailsViewer handles the content of the details view (
 122  * {@link DetailsViewPart}).<br>
 123  * Depending on the type of the selected element the section of the details view
 124  * are created.
 125  *
 126  * @author n.hoffmann
 127  * @created Feb 12, 2010
 128  * @version 1.0
 129  */
 130 public class DetailsViewer extends AbstractCdmDataViewer {
 131
 132     private ISelection selection;
 133
 134     public DetailsViewer(Composite parent, AbstractCdmViewPart viewPart) {
 135         super(parent, viewPart);
 136     }
 137
 138     // START HACK TO MAKE THE DERIVED UNIT FACADE WORK
 139     // since we are getting implementations of DerivedUnitBase from the bulk
 140     // editor
 141     // and not derived unit facade objects,
 142
 143     @Override
 144     public void setInput(Object input) {
 145         if(input instanceof TreeNode){
 146             input = ((TreeNode) input).getValue();
 147         }
 148         if(input instanceof GbifResponse){
 149             input = ((GbifResponse) input).getDerivedUnitFacade();
 150         }
 151         if (input.getClass().equals(DerivedUnit.class)) {
 152             DerivedUnit derivedUnit = (DerivedUnit)input;
 153             try {
 154                 input = DerivedUnitFacade.NewInstance(derivedUnit,
 155                         PreferencesUtil.getDerivedUnitConfigurator());
 156             } catch (DerivedUnitFacadeNotSupportedException e) {
 157 //                MessagingUtils.error(getClass(), e); //nothing should happen, later on the Details View will show an according information that it is not possible to open this data
 158             }
 159         }
 160         else if(input instanceof FieldUnit){
 161             input = DerivedUnitFacade.NewInstance(SpecimenOrObservationType.FieldUnit, (FieldUnit) input);
 162         }
 163         super.setInput(input);
 164     }
 165
 166     @Override
 167     protected void markViewPartDirty() {
 168         if (getInput() instanceof DerivedUnitFacade) {
 169             DerivedUnitFacade facade = (DerivedUnitFacade) getInput();
 170             if(facade.innerDerivedUnit()!=null){
 171                 getViewPart().changed(facade.innerDerivedUnit());
 172             }
 173             else if(facade.innerFieldUnit()!=null){
 174                 getViewPart().changed(facade.innerFieldUnit());
 175             }
 176         }
 177         else{
 178             super.markViewPartDirty();
 179         }
 180     }
 181
 182     // END HACK TO MAKE THE DERIVED UNIT FACADE WORK
 183
 184
 185     /** {@inheritDoc} */
 186     @Override
 187     protected void showParts() {
 188         // FIXME (CM) : Need to clean out this code.
 189         // Too much type checking to decide which detail view to display.
 190         // Need to build in a mechanism where navigators / editors are 'aware'
 191         // of the corresponding detail viewer.
 192         Object input = getInput();
 193
 194         destroySections();
 195         if (input instanceof TaxonBase) {
 196             if(((TaxonBase) input).getName()==null){
 197                 createEmptySection(rootElement);
 198             }
 199             else{
 200                 createTaxonSections(rootElement);
 201             }
 202
 203         } else if (input instanceof NonViralName) {
 204             createNameSections(rootElement);
 205
 206         } else if (input instanceof Reference) {
 207             createReferenceSections(rootElement);
 208
 209         } else if (input instanceof Team) {
 210             createTeamDetailSection(rootElement);
 211
 212         } else if (input instanceof Person) {
 213             createPersonDetailSection(rootElement);
 214
 215         } else if (input instanceof TeamOrPersonBase) {
 216             createTeamOrPersonBaseDetailSection(rootElement);
 217
 218         } else if (input instanceof DescriptionBase) {
 219             if(input instanceof SpecimenDescription){
 220                 //TODO: add more sections to DetailsView for SpecimenDescription
 221                 createSpecimenDescriptionSection(rootElement);
 222             }
 223             else{
 224                 Set<Marker> descriptionMarkers = ((DescriptionBase<?>) input).getMarkers();
 225
 226                 Boolean isUseDescription = false;
 227                 for (Marker marker : descriptionMarkers) {
 228                     if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
 229                         isUseDescription = true;
 230                     }
 231                 }
 232                 if (((DescriptionBase<?>) input).isImageGallery()) {
 233                     createImageGallerySection(rootElement);
 234
 235                 } else if (isUseDescription) {
 236                     createUseDescriptionSection(rootElement);
 237                 } else {
 238                     createDescriptionSection(rootElement);
 239
 240                 }
 241             }
 242         } else if (input instanceof DescriptionElementBase) {
 243             Set<Marker> descriptionMarkers = ((DescriptionElementBase) input).getInDescription().getMarkers();
 244
 245             Boolean isUseDescription = false;
 246             for (Marker marker : descriptionMarkers) {
 247                 if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
 248                     isUseDescription = true;
 249                 }
 250             }
 251
 252             if (isUseDescription == true && input instanceof CategoricalData) {
 253                 createUseRecordSection(rootElement);
 254             } else {
 255                 createDescriptionElementSection(rootElement);
 256             }
 257
 258         } else if (input instanceof Media) {
 259             createMediaElementSection(rootElement);
 260
 261         } else if (input instanceof DerivedUnitFacade) {
 262             if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.FieldUnit){
 263                 if(((DerivedUnitFacade) input).innerFieldUnit()==null){
 264                     MessagingUtils.error(DetailsViewer.class, "FieldUnit of facade is null", null);
 265                 }
 266                 else{
 267                     createFieldUnitSection(rootElement);
 268                 }
 269             }
 270             else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.PreservedSpecimen){
 271                 if(((DerivedUnitFacade) input).innerDerivedUnit()==null){
 272                     MessagingUtils.error(DetailsViewer.class, "DerivedUnit of facade is null", null);
 273                 }
 274                 else{
 275                     createDerivedUnitBaseElementSection(rootElement);
 276                 }
 277             }
 278             else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.TissueSample){
 279                 //TissueSample should only be created by using it's own class
 280                 //in future using only one class with different SpecimenOrObservationTypes is desired
 281 //                createTissueSampleSection(rootElement);
 282             }
 283             else{
 284                 createDerivedUnitBaseElementSection(rootElement);
 285             }
 286         } else if (input instanceof DnaSample){
 287             DnaSample dnaSample = (DnaSample)input;
 288             if(dnaSample.getRecordBasis()==SpecimenOrObservationType.TissueSample){
 289                 createTissueSampleSection(rootElement);
 290             }
 291             else if(dnaSample.getRecordBasis()==SpecimenOrObservationType.DnaSample){
 292                 createDnaSampleSection(rootElement);
 293             }
 294         } else if (input instanceof MediaSpecimen){
 295             createMediaSpecimenSection(rootElement);
 296         }
 297         else if(input instanceof Sequence){
 298             createSequenceSection(rootElement);
 299         }
 300         else if(input instanceof SingleRead){
 301             createSingleReadSection(rootElement);
 302         }
 303         else if (input instanceof FeatureNodeContainer) {
 304             createFeatureDistributionSection(rootElement);
 305
 306         }else if ((input instanceof PolytomousKeyNode) || (input instanceof PolytomousKeyRelationship)) {
 307             createPolytomousKeyNodeSection(rootElement);
 308         } else if (input instanceof User) {
 309             createUserSection(rootElement);
 310         } else if (input instanceof Group) {
 311             createGroupSection(rootElement);
 312         } else if (input instanceof TaxonRelationship) {
 313             createTaxonRelationshipSection(rootElement);
 314         } else if (input instanceof TermVocabulary) {
 315             createTermVocabularySection(rootElement);
 316         } else if (input instanceof DefinedTermBase) {
 317             createDefinedTermSection(rootElement);
 318         }
 319         else {
 320             createEmptySection(rootElement);
 321         }
 322         layout();
 323     }
 324
 325
 326     private void createEmptySection(RootElement parent) {
 327         destroySections();
 328
 329         EmptySection emptySection = formFactory.createEmptySection(formFactory, parent, SWT.NONE);
 330
 331         addPart(emptySection);
 332     }
 333
 334     private void createGroupSection(RootElement parent) {
 335         destroySections();
 336
 337         GroupDetailSection groupDetailSection = formFactory.createGroupDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE| ExpandableComposite.EXPANDED);
 338         MemberDetailSection memberDetailSection = formFactory.createMemberDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 339         GrantedAuthorityDetailSection grantedAuthorityDetailSection = formFactory.createGrantedAuthorityDetailSection(getConversationHolder(), parent,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 340
 341         addPart(groupDetailSection);
 342         addPart(memberDetailSection);
 343         addPart(grantedAuthorityDetailSection);
 344     }
 345
 346     /** {@inheritDoc} */
 347     @Override
 348     public ISelection getSelection() {
 349         return selection;
 350     }
 351
 352     /** {@inheritDoc} */
 353     @Override
 354     public void setSelection(ISelection selection, boolean reveal) {
 355         this.selection = selection;
 356         if(this.selection!=null){
 357             SelectionChangedEvent selectionChangedEvent = new SelectionChangedEvent(this, selection);
 358             fireSelectionChanged(selectionChangedEvent);
 359         }
 360     }
 361
 362     private void createTaxonSections(RootElement parent) {
 363         destroySections();
 364
 365         ParsingMessagesSection parsingMessagesSection = formFactory.createParsingMessagesSection(getConversationHolder(), parent, this,
 366                 ExpandableComposite.EXPANDED | ExpandableComposite.EXPANDED);
 367         if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION)){
 368                 TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this,
 369                 ExpandableComposite.TWISTIE     | ExpandableComposite.EXPANDED);
 370                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 371                 addPart(taxonBaseDetailSection);
 372         }else{
 373                 if (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_TAXON)){
 374                     TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this,
 375                                 ExpandableComposite.TWISTIE     | ExpandableComposite.EXPANDED);
 376                     formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 377
 378                     addPart(taxonBaseDetailSection);
 379                 }
 380         }
 381         NonViralNameDetailSection nonViralNameSection = formFactory
 382                 .createNonViralNameDetailSection(getConversationHolder(), parent, this, true,
 383                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 384         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 385         if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE))){
 386                     NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
 387                                 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 388                     formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 389                     addPart(referenceDetailSection);
 390
 391         }
 392         if ( !PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS))){
 393                     NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
 394                                 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 395                     formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 396                     addPart(nomenclaturalStatusSection);
 397         }
 398         if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)  ){
 399                 if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_PROTOLOGUE))){
 400                         ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 401                         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 402                         addPart(protologSection);
 403                 }
 404
 405                 if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) &&  PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION))){
 406                         TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 407                         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 408                         addPart(typeDesignationSection);
 409                 }
 410
 411                 if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP))){
 412                         NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 413                         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 414                         addPart(nameRelationshipSection);
 415                 }
 416         }
 417
 418         addPart(parsingMessagesSection);
 419
 420         addPart(nonViralNameSection);
 421
 422     }
 423
 424     private void createNameSections(RootElement parent) {
 425         destroySections();
 426         NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(
 427                 getConversationHolder(), parent, this, false, ExpandableComposite.TWISTIE
 428                         | ExpandableComposite.EXPANDED);
 429         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 430
 431         NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
 432                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 433         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 434
 435         NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
 436                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 437         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 438
 439         addPart(nonViralNameSection);
 440         addPart(nomenclaturalStatusSection);
 441         addPart(referenceDetailSection);
 442 //TODO RL
 443         if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)){
 444                         ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 445                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 446
 447                 TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 448                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 449
 450                 NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 451                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 452                 addPart(protologSection);
 453                 addPart(typeDesignationSection);
 454                 addPart(nameRelationshipSection);
 455         }
 456     }
 457
 458     private void createReferenceSections(RootElement parent) {
 459         destroySections();
 460
 461         ReferenceDetailSection referenceDetailSection = formFactory.createReferenceDetailSection(getConversationHolder(), parent, this,
 462                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 463
 464         addPart(referenceDetailSection);
 465     }
 466
 467     private void createTeamOrPersonBaseDetailSection(RootElement parent) {
 468         destroySections();
 469         TeamOrPersonBaseDetailSection teamOrPersonBaseDetailSection = formFactory.createTeamOrPersonBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 470
 471         addPart(teamOrPersonBaseDetailSection);
 472     }
 473
 474     private void createTeamDetailSection(RootElement parent) {
 475         destroySections();
 476         TeamDetailSection teamDetailSection = formFactory.createTeamDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 477
 478         addPart(teamDetailSection);
 479     }
 480
 481     private void createPersonDetailSection(RootElement parent) {
 482         destroySections();
 483         PersonDetailSection personDetailSection = formFactory.createPersonDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 484         addPart(personDetailSection);
 485     }
 486
 487     private void createDescriptionElementSection(RootElement parent) {
 488         destroySections();
 489
 490         DescriptionElementDetailSection descriptionElementDetailSection = formFactory.createDescriptionElementDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 491
 492         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 493
 494         DescriptionElementSourceSection descriptionElementSourceSection = formFactory.createDescriptionElementSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 495
 496         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 497
 498         DescriptionElementMediaSection descriptionElementMediaSection = formFactory.createDescriptionElementMediaSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 499
 500         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 501
 502         addPart(descriptionElementDetailSection);
 503         addPart(descriptionElementSourceSection);
 504         addPart(descriptionElementMediaSection);
 505     }
 506
 507     private void createDescriptionSection(RootElement parent) {
 508         destroySections();
 509         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 510
 511         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 512
 513         NaturalLanguageSection naturalLanguageSection = formFactory.createNaturalLanguageSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 514
 515         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 516
 517 //        DescribedSpecimenSection describedSpecimenSection = formFactory.createDescribedSpecimenSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 518 //
 519 //        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 520
 521         //              DescriptionSourceSection descriptionSourceSection = (DescriptionSourceSection) formFactory
 522         //                              .createEntityDetailSection(EntityDetailType.DESCRIPTIONSOURCE,
 523         //                                              getConversationHolder(), parent, Section.TWISTIE);
 524         //
 525         //              formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 526
 527         ScopeSection scopeSection = formFactory.createScopeSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 528
 529         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 530
 531         addPart(descriptionDetailSection);
 532         addPart(naturalLanguageSection);
 533 //        addPart(describedSpecimenSection);
 534         //              addPart(descriptionSourceSection);
 535         addPart(scopeSection);
 536     }
 537
 538     private void createSpecimenDescriptionSection(RootElement parent) {
 539         destroySections();
 540         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 541         addPart(descriptionDetailSection);
 542     }
 543
 544     private void createUseDescriptionSection(RootElement parent) {
 545         destroySections();
 546         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 547
 548         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 549
 550         DescriptionSourceSection descriptionSourceSection = formFactory.createDescriptionSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 551
 552         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 553
 554         addPart(descriptionDetailSection);
 555         addPart(descriptionSourceSection);
 556
 557     }
 558
 559     private void createImageGallerySection(RootElement parent) {
 560         destroySections();
 561         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 562
 563         addPart(descriptionDetailSection);
 564     }
 565
 566     private void createMediaElementSection(RootElement parent) {
 567         destroySections();
 568
 569         MediaDetailsSection mediaDetailSection = formFactory.createMediaDetailsSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 570
 571         addPart(mediaDetailSection);
 572     }
 573
 574     private void createDerivedUnitBaseElementSection(RootElement parent) {
 575         destroySections();
 576
 577         DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection = formFactory.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 578         //TODO for DerivateEditor do not use facade anymore to avoid this special case handling #4539
 579         if(!(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart)){
 580             derivedUnitGeneralDetailSection.setShowOnlyDerivedUnitData(true);
 581         }
 582         addPart(derivedUnitGeneralDetailSection);
 583
 584         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 585
 586         DerivedUnitBaseDetailSection derivedUnitBaseDetailSection = formFactory.createDerivedUnitBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 587         addPart(derivedUnitBaseDetailSection);
 588
 589         //for editors working with facades
 590         if(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart){
 591             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 592             GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 593             addPart(gatheringEventDetailSection);
 594
 595             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 596             FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 597             addPart(fieldUnitDetailSection);
 598         }
 599         else{
 600
 601             if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_TAXON_ASSOCIATIONS)){
 602                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 603                 TaxonAssociationDetailSection taxonAssociationDetailSection = formFactory.createTaxonAssociationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 604                 addPart(taxonAssociationDetailSection);
 605             }
 606             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 607             DerivedUnitFacadeIdentifierSection identifierDetailSection = formFactory.createDerivedUnitFacadeIdentifierSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 608             addPart(identifierDetailSection);
 609         }
 610         if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
 611             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 612             DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 613             addPart(determinationDetailSection);
 614         }
 615
 616         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 617         DerivedUnitTypeDesignationSection derivedUnitTypeDesignationSection = formFactory.createDerivedUnitTypeDesignationSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 618         addPart(derivedUnitTypeDesignationSection);
 619
 620     }
 621
 622     private void createFieldUnitSection(RootElement parent) {
 623         destroySections();
 624
 625         FieldUnitGeneralDetailSection fielUnitGeneralDetailSection = formFactory.createFieldUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 626
 627         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 628
 629         GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 630
 631         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 632
 633         FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 634
 635         addPart(fielUnitGeneralDetailSection);
 636         addPart(gatheringEventDetailSection);
 637         addPart(fieldUnitDetailSection);
 638
 639         if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
 640             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 641             DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 642             addPart(determinationDetailSection);
 643         }
 644     }
 645
 646     private void createTissueSampleSection(RootElement parent) {
 647         destroySections();
 648
 649         TissueSampleGeneralDetailSection section = formFactory.createTissueSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 650
 651         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 652
 653         SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 654
 655         addPart(section);
 656         addPart(sampleDesignationDetailSection);
 657     }
 658
 659     private void createDnaSampleSection(RootElement parent) {
 660         destroySections();
 661
 662         DnaSampleGeneralDetailSection section = formFactory.createDnaSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 663
 664         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 665
 666         DnaSamplePreparationPreservationSection preparationPreservationSection = formFactory.createDnaSamplePreparationPreservationSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 667
 668         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 669
 670         DnaQualityDetailSection qualitySection = formFactory.createDnaQualityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 671
 672         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 673
 674         SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 675
 676         addPart(section);
 677         addPart(preparationPreservationSection);
 678         addPart(qualitySection);
 679         addPart(sampleDesignationDetailSection);
 680     }
 681
 682     private void createSequenceSection(RootElement parent) {
 683         destroySections();
 684
 685         SequenceGeneralDetailSection section = formFactory.createSequenceGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 686
 687         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 688
 689         SequenceReferenceCollectionDetailSection referenceSection = formFactory.createSequenceReferenceCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 690
 691         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 692
 693         SequenceContigFileCollectionDetailSection contigFileSection = formFactory.createSequenceContigFileCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 694
 695
 696         addPart(section);
 697         addPart(referenceSection);
 698         addPart(contigFileSection);
 699     }
 700
 701     private void createSingleReadSection(RootElement parent) {
 702         destroySections();
 703
 704         SingleReadGeneralDetailSection section = formFactory.createSingleReadGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 705         addPart(section);
 706
 707         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 708
 709         SingleReadPherogramCollectionDetailSection pherogramSection = formFactory.createSingleReadPherogramCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 710         addPart(pherogramSection);
 711
 712     }
 713
 714     private void createMediaSpecimenSection(RootElement parent) {
 715         destroySections();
 716
 717         MediaSpecimenGeneralDetailSection generalSection = formFactory.createMediaSpecimenGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 718         addPart(generalSection);
 719
 720         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 721
 722         RightsSection rightsSection = formFactory.createRightsSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 723         addPart(rightsSection);
 724
 725     }
 726
 727     private void createFeatureDistributionSection(RootElement parent) {
 728         destroySections();
 729
 730         FeatureDistributionDetailSection featureDistributionSection = formFactory.createFeatureDistributionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 731
 732         addPart(featureDistributionSection);
 733     }
 734
 735     private void createPolytomousKeyNodeSection(RootElement parent) {
 736         destroySections();
 737
 738         PolytomousKeyDetailSection polytomousKeyDetailSection = formFactory.createPolytomousKeyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 739
 740         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 741
 742         PolytomousKeyNodeDetailSection polytomousKeyNodeDetailSection = formFactory.createPolytomousKeyNodeDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 743
 744         addPart(polytomousKeyDetailSection);
 745         addPart(polytomousKeyNodeDetailSection);
 746
 747     }
 748
 749     private void createUseRecordSection(RootElement parent) {
 750         destroySections();
 751
 752         UseRecordDetailSection descriptionUseRecordSection = formFactory.createUseRecordDetailSection(getConversationHolder(), parent, this,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 753
 754         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 755
 756         addPart(descriptionUseRecordSection);
 757
 758
 759     }
 760
 761     private void createUserSection(RootElement parent) {
 762         destroySections();
 763
 764         UserDetailSection userDetailSection = formFactory.createUserDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 765
 766         GroupsByUserDetailSection groupByUserDetailSection = formFactory.createGroupsByUserDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 767
 768         addPart(userDetailSection);
 769         addPart(groupByUserDetailSection);
 770     }
 771
 772     private void createTaxonRelationshipSection(RootElement parent) {
 773         destroySections();
 774
 775         TaxonRelationshipDetailSection taxonRelationshipDetailSection = formFactory.createTaxonRelationshipDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 776
 777         ReferencedEntityDetailSection referencedEntityBaseDetailSection = formFactory.createReferencedEntityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 778         addPart(taxonRelationshipDetailSection);
 779         addPart(referencedEntityBaseDetailSection);
 780     }
 781
 782     private void createTermVocabularySection(RootElement parent) {
 783         destroySections();
 784
 785         TermVocabularyDetailSection termVocabularyDetailSection = formFactory.createTermVocabularyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 786         addPart(termVocabularyDetailSection);
 787     }
 788
 789     private void createDefinedTermSection(RootElement parent) {
 790         destroySections();
 791
 792         AbstractFormSection<?> definedTermDetailSection = formFactory.createDefinedTermDetailSection(getInput().getClass(), getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 793         addPart(definedTermDetailSection);
 794     }
 795
 796         @Override
 797         public void update(CdmDataChangeMap arg0) {
 798
 799         }
 800
 801 }