revert the changes in ImportManager
[taxeditor.git] / eu.etaxonomy.taxeditor.molecular / plugin.xml
1 <?xml version="1.0" encoding="UTF-8"?>
2 <?eclipse version="3.4"?>
3 <plugin>
4 <extension
5 point="org.eclipse.ui.editors">
6 <editor
7 class="eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor"
8 default="false"
9 id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor"
10 name="%editor.ALIGNMENT_EDITOR">
11 </editor>
12 </extension>
13 <extension
14 point="org.eclipse.ui.views">
15 <view
16 allowMultiple="true"
17 class="eu.etaxonomy.taxeditor.molecular.editor.PherogramViewPart"
18 id="eu.etaxonomy.taxeditor.molecular.PherogramView"
19 name="%view.PHEROGRAM_VIEW"
20 restorable="true">
21 </view>
22 </extension>
23 <extension
24 point="org.eclipse.ui.commands">
25 <command
26 defaultHandler="eu.etaxonomy.taxeditor.molecular.handler.EditSequenceHandler"
27 id="eu.etaxonomy.taxeditor.molecular.editSequence"
28 name="%command.EDIT_SEQUENCE">
29 </command>
30 <command
31 defaultHandler="eu.etaxonomy.taxeditor.molecular.handler.ShowPherogramHandler"
32 id="eu.etaxonomy.taxeditor.molecular.showPherogram"
33 name="%command.name.SHOW_PHEROGRAM">
34 </command>
35 <command
36 id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft"
37 name="%command.name.CUT_PHEROGRAM_LEFT">
38 </command>
39 <command
40 id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight"
41 name="%command.name.CUT_PHEROGRAM_RIGHT">
42 </command>
43 <command
44 id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows"
45 name="%command.name.REVERSE_COMPLEMENT_SELECTED_ROWS">
46 </command>
47 <command
48 id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus"
49 name="%command.name.CREATE_CONSENUS_SEQUENCE">
50 </command>
51 <command
52 id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus"
53 name="%command.name.UPDATE_CONSENSUS_SEQUENCE">
54 </command>
55 <command
56 id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities"
57 name="%command.name.TOGGLE_SHOW_PROBABILITY_VALUES">
58 </command>
59 <command
60 id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines"
61 name="%command.name.TOGGLE_SHOW_BASE_CALL_LINES">
62 </command>
63 <command
64 id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput"
65 name="%command.name.CHANGE_QUALITY_OUTPUT">
66 </command>
67 <command
68 id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram"
69 name="%command.name.LOAD_PHEROGRAM">
70 </command>
71 <command
72 id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite"
73 name="%command.name.TOGGLE_INSERT_OVERWRITE">
74 </command>
75 <command
76 id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleLeftRightInsertion"
77 name="%command.name.TOGGLE_LEFT_RIGHT_INSERTION">
78 </command>
79 </extension>
80 <extension
81 point="org.eclipse.ui.menus">
82 <menuContribution
83 locationURI="toolbar:org.eclipse.ui.main.toolbar?after=eu.etaxonomy.taxeditor.navigation.search.toolbar">
84 <toolbar
85 id="eu.etaxonomy.taxeditor.molecular.alignmentToolbar">
86 <command
87 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite"
88 label="%command.TOGGLE_INSERT_OVERWRITE"
89 style="push">
90 <visibleWhen
91 checkEnabled="true">
92 <with
93 variable="activePartId">
94 <equals
95 value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
96 </equals>
97 </with>
98 </visibleWhen>
99 </command>
100 <command
101 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleLeftRightInsertion"
102 icon="icons/pherogram-insert-left-16x16.png"
103 style="push">
104 <visibleWhen
105 checkEnabled="true">
106 <with
107 variable="activePartId">
108 <equals
109 value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
110 </equals>
111 </with>
112 </visibleWhen>
113 </command>
114 </toolbar>
115 </menuContribution>
116 <menuContribution
117 allPopups="false"
118 locationURI="menu:org.eclipse.ui.main.menu">
119 <menu
120 label="%menu.ALIGNMENT_EDITOR">
121 <command
122 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram"
123 style="push">
124 </command>
125 <command
126 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft"
127 id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft"
128 name="Cut pherogram left">
129 </command>
130 <command
131 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight"
132 id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight"
133 style="push">
134 </command>
135 <command
136 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows"
137 mnemonic="r"
138 style="push">
139 </command>
140 <command
141 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus"
142 style="push">
143 </command>
144 <command
145 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus"
146 style="push">
147 </command>
148 <visibleWhen
149 checkEnabled="true">
150 <with
151 variable="activePartId">
152 <equals
153 value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
154 </equals>
155 </with>
156 </visibleWhen>
157 </menu>
158 <menu
159 label="%menu.label.PHEROGRAM_VIEW">
160 <command
161 commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput"
162 style="push">
163 </command>
164 <command
165 commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities"
166 style="push">
167 </command>
168 <command
169 commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines"
170 style="push">
171 </command>
172 <visibleWhen
173 checkEnabled="true">
174 <with
175 variable="activePartId">
176 <equals
177 value="eu.etaxonomy.taxeditor.molecular.PherogramView">
178 </equals>
179 </with>
180 </visibleWhen>
181 </menu>
182 </menuContribution>
183 <menuContribution
184 locationURI="popup:eu.etaxonomy.taxeditor.editor.view.derivate.DerivateView?before=eu.etaxonomy.taxeditor.editor.derivative.reuseSingleReadMenuItem">
185 <separator
186 name="eu.etaxonomy.taxeditor.molecular.separator5"
187 visible="true">
188 </separator>
189 <command
190 commandId="eu.etaxonomy.taxeditor.molecular.editSequence"
191 label="%command.label.EDIT_SEQUENCE"
192 style="push">
193 <visibleWhen
194 checkEnabled="true">
195 <reference
196 definitionId="isSequence">
197 </reference>
198 </visibleWhen>
199 </command>
200 <command
201 commandId="eu.etaxonomy.taxeditor.molecular.showPherogram"
202 label="%command.label.SHOW_PHEROGRAM"
203 style="push">
204 <visibleWhen
205 checkEnabled="true">
206 <reference
207 definitionId="isSingleRead">
208 </reference>
209 </visibleWhen>
210 </command>
211 </menuContribution>
212 </extension>
213 <extension
214 point="org.eclipse.ui.handlers">
215 <handler
216 class="eu.etaxonomy.taxeditor.molecular.handler.LoadPherogramHandler"
217 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram">
218 <activeWhen>
219 <with
220 variable="activePartId">
221 <equals
222 value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
223 </equals>
224 </with>
225 </activeWhen>
226 </handler>
227 <handler
228 class="eu.etaxonomy.taxeditor.molecular.handler.ToggleInsertOverwriteHandler"
229 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite">
230 </handler>
231 <handler
232 class="eu.etaxonomy.taxeditor.molecular.handler.ToggleLeftRightInsertionHandler"
233 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleLeftRightInsertion">
234 </handler>
235 <handler
236 class="eu.etaxonomy.taxeditor.molecular.handler.CutPherogramLeftHandler"
237 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft">
238 </handler>
239 <handler
240 class="eu.etaxonomy.taxeditor.molecular.handler.CutPherogramRightHandler"
241 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight">
242 </handler>
243 <handler
244 class="eu.etaxonomy.taxeditor.molecular.handler.ReverseComplementHandler"
245 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows">
246 </handler>
247 <handler
248 class="eu.etaxonomy.taxeditor.molecular.handler.CreateConsensusSequenceHandler"
249 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus">
250 </handler>
251 <handler
252 class="eu.etaxonomy.taxeditor.molecular.handler.UpdateConsensusSequenceHandler"
253 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus">
254 </handler>
255 <handler
256 class="eu.etaxonomy.taxeditor.molecular.handler.ToggleShowPherogramProbabilitiesHandler"
257 commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities">
258 </handler>
259 <handler
260 class="eu.etaxonomy.taxeditor.molecular.handler.ToggleShowPherogramBaseCallLinesHandler"
261 commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines">
262 </handler>
263 <handler
264 class="eu.etaxonomy.taxeditor.molecular.handler.ChangePherogramQualityOutputType"
265 commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput">
266 </handler>
267 <handler
268 class="eu.etaxonomy.taxeditor.molecular.handler.AlignmentEditorCopyHandler"
269 commandId="org.eclipse.ui.edit.copy">
270 <activeWhen>
271 <with
272 variable="activePartId">
273 <equals
274 value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
275 </equals>
276 </with>
277 </activeWhen>
278 </handler>
279 <handler
280 class="eu.etaxonomy.taxeditor.molecular.handler.AlignmentEditorCutHandler"
281 commandId="org.eclipse.ui.edit.cut">
282 <activeWhen>
283 <with
284 variable="activePartId">
285 <equals
286 value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
287 </equals>
288 </with>
289 </activeWhen>
290 </handler>
291 <handler
292 class="eu.etaxonomy.taxeditor.molecular.handler.AlignmentEditorPasteHandler"
293 commandId="org.eclipse.ui.edit.paste">
294 <activeWhen>
295 <with
296 variable="activePartId">
297 <equals
298 value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
299 </equals>
300 </with>
301 </activeWhen>
302 </handler>
303 </extension>
304 <extension
305 point="org.eclipse.ui.bindings">
306 <scheme
307 description="%scheme.description"
308 id="eu.etaxonomy.taxeditor.bindings.scheme.default"
309 name="%scheme.name">
310 </scheme>
311 <key
312 commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram"
313 schemeId="eu.etaxonomy.taxeditor.bindings.scheme.default"
314 sequence="M1+O">
315 </key>
316 </extension>
317
318 </plugin>