1 package eu
.etaxonomy
.taxeditor
.editor
.view
.derivate
;
3 import java
.util
.ArrayList
;
4 import java
.util
.Arrays
;
5 import java
.util
.Collection
;
6 import java
.util
.Collections
;
7 import java
.util
.HashMap
;
8 import java
.util
.HashSet
;
12 import java
.util
.UUID
;
14 import javax
.annotation
.PostConstruct
;
15 import javax
.annotation
.PreDestroy
;
16 import javax
.inject
.Inject
;
17 import javax
.inject
.Named
;
19 import org
.eclipse
.core
.runtime
.IProgressMonitor
;
20 import org
.eclipse
.e4
.core
.di
.annotations
.Optional
;
21 import org
.eclipse
.e4
.ui
.di
.Focus
;
22 import org
.eclipse
.e4
.ui
.di
.Persist
;
23 import org
.eclipse
.e4
.ui
.model
.application
.ui
.MDirtyable
;
24 import org
.eclipse
.e4
.ui
.model
.application
.ui
.basic
.MPart
;
25 import org
.eclipse
.e4
.ui
.services
.EMenuService
;
26 import org
.eclipse
.e4
.ui
.services
.IServiceConstants
;
27 import org
.eclipse
.e4
.ui
.workbench
.modeling
.ESelectionService
;
28 import org
.eclipse
.jface
.util
.LocalSelectionTransfer
;
29 import org
.eclipse
.jface
.viewers
.AbstractTreeViewer
;
30 import org
.eclipse
.jface
.viewers
.ISelection
;
31 import org
.eclipse
.jface
.viewers
.ISelectionChangedListener
;
32 import org
.eclipse
.jface
.viewers
.IStructuredSelection
;
33 import org
.eclipse
.jface
.viewers
.StructuredSelection
;
34 import org
.eclipse
.jface
.viewers
.TreeNode
;
35 import org
.eclipse
.jface
.viewers
.TreeSelection
;
36 import org
.eclipse
.jface
.viewers
.TreeViewer
;
37 import org
.eclipse
.swt
.SWT
;
38 import org
.eclipse
.swt
.dnd
.DND
;
39 import org
.eclipse
.swt
.dnd
.Transfer
;
40 import org
.eclipse
.swt
.layout
.GridData
;
41 import org
.eclipse
.swt
.layout
.GridLayout
;
42 import org
.eclipse
.swt
.widgets
.Composite
;
43 import org
.eclipse
.swt
.widgets
.Tree
;
44 import org
.eclipse
.ui
.IMemento
;
46 import eu
.etaxonomy
.cdm
.api
.conversation
.ConversationHolder
;
47 import eu
.etaxonomy
.cdm
.api
.conversation
.IConversationEnabled
;
48 import eu
.etaxonomy
.cdm
.api
.service
.IOccurrenceService
;
49 import eu
.etaxonomy
.cdm
.hibernate
.HibernateProxyHelper
;
50 import eu
.etaxonomy
.cdm
.model
.common
.CdmBase
;
51 import eu
.etaxonomy
.cdm
.model
.molecular
.SingleRead
;
52 import eu
.etaxonomy
.cdm
.model
.occurrence
.FieldUnit
;
53 import eu
.etaxonomy
.cdm
.model
.occurrence
.SpecimenOrObservationBase
;
54 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
55 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonNode
;
56 import eu
.etaxonomy
.cdm
.persistence
.hibernate
.CdmDataChangeMap
;
57 import eu
.etaxonomy
.taxeditor
.editor
.EditorUtil
;
58 import eu
.etaxonomy
.taxeditor
.editor
.MultiPageTaxonEditor
;
59 import eu
.etaxonomy
.taxeditor
.editor
.l10n
.Messages
;
60 import eu
.etaxonomy
.taxeditor
.editor
.view
.derivate
.searchFilter
.DerivateSearchCompositeController
;
61 import eu
.etaxonomy
.taxeditor
.model
.AbstractUtility
;
62 import eu
.etaxonomy
.taxeditor
.model
.IContextListener
;
63 import eu
.etaxonomy
.taxeditor
.model
.IDirtyMarkable
;
64 import eu
.etaxonomy
.taxeditor
.model
.IPartContentHasDetails
;
65 import eu
.etaxonomy
.taxeditor
.model
.IPartContentHasFactualData
;
66 import eu
.etaxonomy
.taxeditor
.model
.IPartContentHasMedia
;
67 import eu
.etaxonomy
.taxeditor
.model
.IPartContentHasSupplementalData
;
68 import eu
.etaxonomy
.taxeditor
.model
.MessagingUtils
;
69 import eu
.etaxonomy
.taxeditor
.operation
.IPostOperationEnabled
;
70 import eu
.etaxonomy
.taxeditor
.session
.ICdmEntitySession
;
71 import eu
.etaxonomy
.taxeditor
.session
.ICdmEntitySessionEnabled
;
72 import eu
.etaxonomy
.taxeditor
.store
.CdmStore
;
73 import eu
.etaxonomy
.taxeditor
.view
.derivateSearch
.DerivateContentProvider
;
74 import eu
.etaxonomy
.taxeditor
.view
.derivateSearch
.DerivateLabelProvider
;
75 import eu
.etaxonomy
.taxeditor
.workbench
.part
.IE4SavablePart
;
78 * Displays the derivate hierarchy of the specimen specified in the editor input.
81 public class DerivateView
implements IPartContentHasFactualData
, IConversationEnabled
,
82 ICdmEntitySessionEnabled
, IDirtyMarkable
, IPostOperationEnabled
, IPartContentHasDetails
, IPartContentHasSupplementalData
, IPartContentHasMedia
,
83 IContextListener
, IE4SavablePart
{
85 private static final String SPECIMEN_EDITOR
= Messages
.DerivateView_SPECIMEN_EDITOR
;
87 public static final String ID
= "eu.etaxonomy.taxeditor.editor.view.derivate.DerivateView"; //$NON-NLS-1$
88 public static final String INPUT_ID
= ID
+".editorInput"; //$NON-NLS-1$
90 public static final String YOU_NEED_TO_SAVE_BEFORE_PERFORMING_THIS_ACTION
= Messages
.DerivateView_YOU_NEED_TO_SAVE
;
91 public static final String VIEW_HAS_UNSAVED_CHANGES
= Messages
.DerivateView_UNSAVED_CHANGES
;
93 private static final List
<String
> SPECIMEN_INIT_STRATEGY
= Arrays
.asList(new String
[] {
94 "descriptions", //$NON-NLS-1$
95 "annotations", //$NON-NLS-1$
96 "markers", //$NON-NLS-1$
97 "credits", //$NON-NLS-1$
98 "extensions", //$NON-NLS-1$
99 "rights", //$NON-NLS-1$
100 "sources", //$NON-NLS-1$
101 "derivationEvents.derivatives.annotations", //$NON-NLS-1$
102 "derivationEvents.derivatives.markers", //$NON-NLS-1$
103 "derivationEvents.derivatives.credits", //$NON-NLS-1$
104 "derivationEvents.derivatives.extensions", //$NON-NLS-1$
105 "derivationEvents.derivatives.rights", //$NON-NLS-1$
106 "derivationEvents.derivatives.sources" //$NON-NLS-1$
109 private static final int WARN_THRESHOLD
= 200;
112 private ConversationHolder conversation
;
114 private TreeViewer viewer
;
116 private final int dndOperations
= DND
.DROP_MOVE
;
118 private DerivateLabelProvider labelProvider
;
120 private DerivateContentProvider contentProvider
;
122 private DerivateSearchCompositeController derivateSearchCompositeController
;
125 * A map with keys being the derivative entities belonging to the {@link UUID}s passed to the constructor
126 * and values being the root elements of the hierarchy (may be the same objects as the derivative entities)
128 private Map
<SpecimenOrObservationBase
<?
>, SpecimenOrObservationBase
<?
>> derivateToRootEntityMap
;
131 * The set of root elements
133 private Set
<SpecimenOrObservationBase
<?
>> rootElements
;
135 private ICdmEntitySession cdmEntitySession
;
138 * <code>true</code> if this view is listening to selection changes
140 private boolean listenToSelectionChange
;
142 private Taxon selectedTaxon
;
145 private ESelectionService selService
;
148 private MDirtyable dirty
;
150 private ISelectionChangedListener selectionChangedListener
;
153 * Default constructor
156 public DerivateView() {
162 public void init(DerivateViewEditorInput editorInput
){
163 this.derivateToRootEntityMap
= new HashMap
<>();
164 this.rootElements
= new HashSet
<>();
167 Collection
<UUID
> derivativeUuids
= editorInput
.getDerivativeUuids();
168 checkWarnThreshold(derivativeUuids
);
169 updateRootEntities(derivativeUuids
);
171 derivateSearchCompositeController
.setTaxonFilter(editorInput
.getTaxonUuid());
174 // getEditorSite().getActionBars().getStatusLineManager().setMessage(""); //$NON-NLS-1$
178 public void createPartControl(Composite parent
, EMenuService menuService
) {
179 if (CdmStore
.isActive()){
180 if(conversation
== null){
181 conversation
= CdmStore
.createConversation();
183 if(cdmEntitySession
!=null){
184 cdmEntitySession
= CdmStore
.getCurrentSessionManager().newSession(this, true);
190 //listen to context changes
191 CdmStore
.getContextManager().addContextListener(this);
193 parent
.setLayout(new GridLayout());
195 //---search and filter---
196 derivateSearchCompositeController
= new DerivateSearchCompositeController(parent
, this);
197 GridData gridDataSearchBar
= new GridData();
198 gridDataSearchBar
.horizontalAlignment
= GridData
.FILL
;
199 gridDataSearchBar
.grabExcessHorizontalSpace
= true;
200 derivateSearchCompositeController
.setLayoutData(gridDataSearchBar
);
201 derivateSearchCompositeController
.setEnabled(CdmStore
.isActive());
204 viewer
= new TreeViewer(new Tree(parent
, SWT
.MULTI
| SWT
.H_SCROLL
| SWT
.V_SCROLL
| SWT
.FULL_SELECTION
));
205 GridData gridDataTree
= new GridData();
206 gridDataTree
.horizontalAlignment
= GridData
.FILL
;
207 gridDataTree
.verticalAlignment
= GridData
.FILL
;
208 gridDataTree
.grabExcessVerticalSpace
= true;
209 gridDataTree
.grabExcessHorizontalSpace
= true;
210 viewer
.getTree().setLayoutData(gridDataTree
);
211 contentProvider
= new DerivateContentProvider();
212 viewer
.setContentProvider(contentProvider
);
213 labelProvider
= new DerivateLabelProvider();
214 labelProvider
.setConversation(conversation
);
215 viewer
.setLabelProvider(labelProvider
);
216 viewer
.setAutoExpandLevel(AbstractTreeViewer
.ALL_LEVELS
);
217 viewer
.getTree().setEnabled(CdmStore
.isActive());
219 //propagate selection
220 selectionChangedListener
= (event
-> selService
.setSelection(AbstractUtility
.getElementsFromSelectionChangedEvent(event
)));
221 viewer
.addSelectionChangedListener(selectionChangedListener
);
223 //create context menu
224 menuService
.registerContextMenu(viewer
.getControl(), "eu.etaxonomy.taxeditor.editor.popupmenu.specimeneditor");
226 //add drag'n'drop support
227 Transfer
[] transfers
= new Transfer
[] {LocalSelectionTransfer
.getTransfer(),};
228 viewer
.addDragSupport(dndOperations
, transfers
, new DerivateDragListener(this));
229 viewer
.addDropSupport(dndOperations
, transfers
, new DerivateDropListener(this));
232 public void updateRootEntities() {
233 updateRootEntities((Collection
)null);
236 public void updateRootEntities(Collection
<UUID
> derivativeUuids
) {
237 if(conversation
!=null){
238 if (!conversation
.isBound()) {
242 * If the active session is not the session of the Derivative Editor
243 * then we will save the active session for later, bind temporarily
244 * to our session and rebind to the original session when we are
245 * done. This happens e.g. if a selection change happens in the
246 * taxon editor and "Link with editor" is enabled. The selection
247 * change event and thus the loading in updateRootEntities() happens
248 * in the session of the taxon editor.
250 ICdmEntitySession previousCdmEntitySession
= CdmStore
.getCurrentSessionManager().getActiveSession();
251 if(cdmEntitySession
!= null) {
252 cdmEntitySession
.bind();
255 List
<SpecimenOrObservationBase
> derivates
= null;
256 if(derivativeUuids
!=null){
257 this.derivateToRootEntityMap
= new HashMap
<>();
258 this.rootElements
= new HashSet
<>();
259 derivates
= CdmStore
.getService(IOccurrenceService
.class).load(new ArrayList(derivativeUuids
), SPECIMEN_INIT_STRATEGY
);
261 updateRootEntities(derivates
);
262 previousCdmEntitySession
.bind();
267 public void updateRootEntities(List
<SpecimenOrObservationBase
> derivates
) {
269 this.derivateToRootEntityMap
= new HashMap
<>();
270 this.rootElements
= new HashSet
<>();
271 for (SpecimenOrObservationBase derivate
: derivates
) {
273 if(derivate
instanceof FieldUnit
){
274 derivateToRootEntityMap
.put(derivate
, derivate
);
277 SpecimenOrObservationBase
<?
> topMostDerivate
= EditorUtil
.getTopMostDerivate(derivate
);
278 if(topMostDerivate
!=null){
279 derivateToRootEntityMap
.put(derivate
, topMostDerivate
);
282 derivateToRootEntityMap
.put(derivate
, derivate
);
286 for (SpecimenOrObservationBase
<?
> specimen
: derivateToRootEntityMap
.values()) {
287 rootElements
.add(specimen
);
290 labelProvider
.updateLabelCache(rootElements
);
291 viewer
.setInput(rootElements
);
294 // getEditorSite().getActionBars().getStatusLineManager().setMessage(String.format(Messages.DerivateView_CNT_DERIVATIVES_FOUND, rootElements.size()));
296 //set selection to derivatives if the filter criteria
297 //taxon assignment or derivative type are set
298 if(derivates
!=null && !derivateSearchCompositeController
.isDefaultSearch()){
299 List
<TreeNode
> nodesToSelect
= new ArrayList
<>();
300 for (SpecimenOrObservationBase specimenOrObservationBase
: derivates
) {
301 nodesToSelect
.add(new TreeNode(specimenOrObservationBase
));
303 setSelection(new StructuredSelection(nodesToSelect
));
310 private void setSelection(StructuredSelection selection
){
311 viewer
.removeSelectionChangedListener(selectionChangedListener
);
312 viewer
.setSelection(selection
);
313 viewer
.addSelectionChangedListener(selectionChangedListener
);
316 public void updateLabelCache(){
317 labelProvider
.updateLabelCache(rootElements
);
322 public void save(IProgressMonitor monitor
) {
323 String taskName
= Messages
.DerivateView_SAVING_HIERARCHY
;
324 monitor
.beginTask(taskName
, 3);
325 if (!conversation
.isBound()) {
330 // commit the conversation and start a new transaction immediately
331 conversation
.commit(true);
333 CdmStore
.getService(IOccurrenceService
.class).merge(new ArrayList
<>(rootElements
), true);
337 this.setDirty(false);
340 dirty
.setDirty(false);
345 * @param isDirty the isDirty to set
347 public void setDirty(boolean isDirty
) {
348 dirty
.setDirty(isDirty
);
352 public void setFocus() {
353 //make sure to bind again if maybe in another view the conversation was unbound
354 if(conversation
!=null && !conversation
.isBound()){
357 if(cdmEntitySession
!= null) {
358 cdmEntitySession
.bind();
361 viewer
.getControl().setFocus();
362 selService
.setSelection(viewer
.getSelection());
367 public void update(CdmDataChangeMap changeEvents
) {
371 public ConversationHolder
getConversationHolder() {
376 public void changed(Object element
) {
378 //firePropertyChange(IEditorPart.PROP_DIRTY);
379 viewer
.update(new TreeNode(element
), null);
383 public void forceDirty() {
388 public Map
<Object
, List
<String
>> getPropertyPathsMap() {
389 List
<String
> specimenPropertyPaths
= Arrays
.asList(new String
[] {
390 "descriptions", //$NON-NLS-1$
391 "derivationEvents.derivates", //$NON-NLS-1$
392 "annotations", //$NON-NLS-1$
393 "markers", //$NON-NLS-1$
394 "credits", //$NON-NLS-1$
395 "extensions", //$NON-NLS-1$
396 "rights", //$NON-NLS-1$
397 "sources" //$NON-NLS-1$
399 Map
<Object
, List
<String
>> specimenPropertyPathMap
=
401 specimenPropertyPathMap
.put(SpecimenOrObservationBase
.class,specimenPropertyPaths
);
402 return specimenPropertyPathMap
;
406 * Refreshes the derivate hierarchy tree and expands the tree
407 * to show and select the given object.
409 * @param expandTo the object to which the tree should be expanded
411 public void refreshTree(Object expandTo
){
413 TreeSelection selection
= (TreeSelection
) viewer
.getSelection();
414 viewer
.expandToLevel(selection
.getFirstElement(), 1);
415 viewer
.setSelection(new StructuredSelection(new TreeNode(expandTo
)));
419 * Refreshes the derivate hierarchy tree
421 public void refreshTree(){
422 if(!viewer
.getTree().isDisposed()){
427 //FIXME:Remoting hack to make this work for remoting
428 //This should actually be resolved using remoting post operations
429 public void remove(Object obj
) {
430 if (obj
instanceof TreeNode
){
431 obj
= ((TreeNode
)obj
).getValue();
433 rootElements
.remove(obj
);
434 Object o
= this.derivateToRootEntityMap
.remove(obj
);
435 viewer
.setInput(rootElements
);
439 * @return a set of {@link SingleRead}s that have multiple parents
441 public Set
<SingleRead
> getMultiLinkSingleReads() {
442 return DerivateLabelProvider
.getMultiLinkSingleReads();
445 public Object
getSelectionInput() {
446 return selectedTaxon
;
449 public DerivateLabelProvider
getLabelProvider() {
450 return labelProvider
;
454 public boolean postOperation(CdmBase objectAffectedByOperation
) {
456 if(objectAffectedByOperation
!=null){
457 changed(objectAffectedByOperation
);
463 public boolean onComplete() {
469 public boolean canAttachMedia() {
473 public void addFieldUnit(FieldUnit fieldUnit
) {
474 rootElements
.add(fieldUnit
);
475 derivateToRootEntityMap
.put(fieldUnit
, fieldUnit
);
479 public ICdmEntitySession
getCdmEntitySession() {
480 return cdmEntitySession
;
484 public void dispose() {
485 if(conversation
!=null){
486 conversation
.close();
488 if(cdmEntitySession
!= null) {
489 cdmEntitySession
.dispose();
496 public void selectionChanged(@Optional @Named(IServiceConstants
.ACTIVE_SELECTION
) ISelection selection
,
497 @Named(IServiceConstants
.ACTIVE_PART
) MPart activePart
, MPart thisPart
)
499 if(activePart
== thisPart
|| viewer
==null){
502 if(viewer
.getTree().isDisposed()){
505 if(listenToSelectionChange
){
506 selectedTaxon
= null;
507 if(activePart
instanceof MultiPageTaxonEditor
){
508 selectedTaxon
= ((MultiPageTaxonEditor
) activePart
).getTaxon();
510 else if(selection
instanceof IStructuredSelection
){
511 Object selectedElement
= ((IStructuredSelection
) selection
).getFirstElement();
512 if(selectedElement
instanceof CdmBase
){
513 if(((CdmBase
) selectedElement
).isInstanceOf(TaxonNode
.class)){
514 selectedTaxon
= HibernateProxyHelper
.deproxy(selectedElement
, TaxonNode
.class).getTaxon();
516 else if(((CdmBase
) selectedElement
).isInstanceOf(Taxon
.class)){
517 selectedTaxon
= HibernateProxyHelper
.deproxy(selectedElement
, Taxon
.class);
521 if(selectedTaxon
!=null){
522 Collection
<SpecimenOrObservationBase
> fieldUnits
= CdmStore
.getService(IOccurrenceService
.class).listFieldUnitsByAssociatedTaxon(selectedTaxon
, null, null);
523 Collection
<UUID
> uuids
= new HashSet
<>();
524 for (SpecimenOrObservationBase specimenOrObservationBase
: fieldUnits
) {
525 uuids
.add(specimenOrObservationBase
.getUuid());
527 checkWarnThreshold(uuids
);
528 updateRootEntities(uuids
);
530 thisPart
.setLabel(SPECIMEN_EDITOR
+": " + selectedTaxon
.getName()); //$NON-NLS-1$
533 updateRootEntities((Collection
<UUID
>)Collections
.EMPTY_LIST
);
538 private void checkWarnThreshold(Collection
<UUID
> uuids
) {
539 if(uuids
!=null && uuids
.size()>WARN_THRESHOLD
){
540 MessagingUtils
.warningDialog(Messages
.DerivateView_PERF_WARNING
, this.getClass(), String
.format(Messages
.DerivateView_PERF_WARNING_MESSAGE
, uuids
.size()));
545 public TreeViewer
getViewer() {
553 public List
<SpecimenOrObservationBase
<?
>> getRootEntities() {
554 return new ArrayList
<>(rootElements
);
557 public void toggleListenToSelectionChange(MPart part
) {
558 listenToSelectionChange
= !listenToSelectionChange
;
559 derivateSearchCompositeController
.setEnabled(!listenToSelectionChange
);
560 if(!listenToSelectionChange
){
561 selectedTaxon
= null;
562 part
.setLabel(SPECIMEN_EDITOR
);
564 else if(selectedTaxon
==null){
565 part
.setLabel(SPECIMEN_EDITOR
+Messages
.DerivateView_NO_TAXON_SELECTED
);
569 public boolean isListenToSelectionChange(){
570 return listenToSelectionChange
;
577 public void contextAboutToStop(IMemento memento
, IProgressMonitor monitor
) {
584 public void contextStop(IMemento memento
, IProgressMonitor monitor
) {
585 derivateSearchCompositeController
.setEnabled(false);
586 if(!viewer
.getTree().isDisposed()) {
587 viewer
.getTree().setEnabled(false);
588 viewer
.setInput(null);
596 public void contextStart(IMemento memento
, IProgressMonitor monitor
) {
597 derivateSearchCompositeController
.setEnabled(!listenToSelectionChange
);
598 if(!viewer
.getTree().isDisposed()){
599 viewer
.getTree().setEnabled(true);
608 public void contextRefresh(IProgressMonitor monitor
) {
615 public void workbenchShutdown(IMemento memento
, IProgressMonitor monitor
) {
619 public boolean isDirty() {
620 return dirty
.isDirty();