eu.etaxonomy.taxeditor.molecular.lib/pom.xml

   1 <project>
   2   <modelVersion>4.0.0</modelVersion>
   3   <groupId>eu.etaxonomy.taxeditor</groupId>
   4   <artifactId>eu.etaxonomy.taxeditor.molecular.lib</artifactId>
   5   <packaging>eclipse-plugin</packaging>
   6
   7   <parent>
   8     <groupId>eu.etaxonomy</groupId>
   9     <artifactId>taxeditor-parent</artifactId>
  10     <version>5.42.0</version>
  11   </parent>
  12
  13   <name>Molecular Library Dependencies Bundle</name>
  14   <description>Plugin containing all the library dependencies</description>
  15
  16   <build>
  17     <plugins>
  18       <plugin>
  19         <groupId>org.apache.maven.plugins</groupId>
  20         <artifactId>maven-dependency-plugin</artifactId>
  21         <version>3.2.0</version>
  22         <executions>
  23           <execution>
  24             <id>copy-dependencies</id>
  25             <phase>validate</phase>
  26             <goals>
  27               <goal>copy-dependencies</goal>
  28             </goals>
  29             <configuration>
  30               <includeArtifactIds>libralign-core, libralign-swt, libralign-biojava1, libralign-io,
  31                 bioinfweb-commons-java-swt, bioinfweb-commons-java-core,
  32                 bioinfweb-commons-java-bio, bioinfweb-commons-java-swing,
  33                 tic-core, core, sequencing,
  34                 tic-swt, jphyloio-core, owlapi-xmlutils,
  35                 commons-lang3, commons-collections4, commons-beanutils</includeArtifactIds>
  36               <outputDirectory>lib</outputDirectory>
  37               <overWriteReleases>true</overWriteReleases>
  38               <overWriteSnapshots>true</overWriteSnapshots>
  39               <excludeTransitive>true</excludeTransitive>
  40             </configuration>
  41           </execution>
  42           <!-- <execution> -->
  43           <!-- <id>copy-dependencies-sources</id> -->
  44           <!-- <phase>validate</phase> -->
  45           <!-- <goals> -->
  46           <!-- <goal>copy-dependencies</goal> -->
  47           <!-- </goals> -->
  48           <!-- <configuration> -->
  49           <!-- <classifier>sources</classifier> -->
  50           <!-- <includeArtifactIds>cdmlib-commons,cdmlib-model,cdmlib-api,cdmlib-persistence,cdmlib-remote,cdmlib-print,cdmlib-services,cdmlib-ext,cdmlib-io</includeArtifactIds> -->
  51           <!-- <outputDirectory>lib</outputDirectory> -->
  52           <!-- <overWriteReleases>true</overWriteReleases> -->
  53           <!-- <overWriteSnapshots>true</overWriteSnapshots> -->
  54           <!-- <excludeTransitive>true</excludeTransitive> -->
  55           <!-- <failOnMissingClassifierArtifact>false</failOnMissingClassifierArtifact> -->
  56           <!-- </configuration> -->
  57           <!-- </execution> -->
  58         </executions>
  59       </plugin>
  60       <plugin>
  61         <groupId>org.apache.maven.plugins</groupId>
  62         <artifactId>maven-antrun-plugin</artifactId>
  63         <executions>
  64           <execution>
  65             <id>remove-existing-jars</id>
  66             <phase>clean</phase>
  67             <goals>
  68               <goal>run</goal>
  69             </goals>
  70             <configuration>
  71               <target>
  72                 <echo>Remove all jars</echo>
  73                 <delete>
  74                   <fileset dir="./lib" includes="*" />
  75                 </delete>
  76               </target>
  77             </configuration>
  78           </execution>
  79
  80           <!-- The following should not be necessary anymore. -->
  81           <execution>
  82             <id>update-snapshot-jar-names</id>
  83             <phase>validate</phase>
  84             <goals>
  85               <goal>run</goal>
  86             </goals>
  87             <configuration>
  88               <target>
  89                 <echo>Update jars to SNAPSHOT when build with
  90                   timestamp</echo>
  91                 <move todir="./lib">
  92                   <fileset dir="./lib" />
  93                   <mapper type="regexp" from="(^bioinfweb\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
  94                 </move>
  95                 <move todir="./lib">
  96                   <fileset dir="./lib" />
  97                   <mapper type="regexp" from="(^libralign\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
  98                 </move>
  99                 <move todir="./lib">
 100                   <fileset dir="./lib" />
 101                   <mapper type="regexp" from="(^tic\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
 102                 </move>
 103                 <move todir="./lib">
 104                   <fileset dir="./lib" />
 105                   <mapper type="regexp" from="(^jphyloio\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
 106                 </move>
 107               </target>
 108             </configuration>
 109           </execution>
 110         </executions>
 111       </plugin>
 112     </plugins>
 113   </build>
 114
 115   <dependencies>
 116     <!-- Apache commons -->
 117     <dependency>
 118         <groupId>org.apache.commons</groupId>
 119         <artifactId>commons-lang3</artifactId>
 120         <version>3.12.0</version>
 121     </dependency>
 122     <dependency>
 123       <groupId>org.apache.commons</groupId>
 124       <artifactId>commons-collections4</artifactId>
 125       <version>4.1</version>
 126     </dependency>
 127     <dependency>
 128       <groupId>commons-beanutils</groupId>
 129       <artifactId>commons-beanutils</artifactId>
 130       <version>1.9.4</version>
 131     </dependency>
 132
 133     <!-- bioinfweb.commons -->
 134     <dependency>
 135       <groupId>info.bioinfweb.commons.java</groupId>
 136       <artifactId>bioinfweb-commons-java-core</artifactId>
 137       <version>2.2.0</version>
 138     </dependency>
 139     <dependency>
 140       <groupId>info.bioinfweb.commons.java</groupId>
 141       <artifactId>bioinfweb-commons-java-swt</artifactId>
 142       <version>2.0.0</version>
 143     </dependency>
 144     <dependency>
 145       <groupId>info.bioinfweb.commons.java</groupId>
 146       <artifactId>bioinfweb-commons-java-bio</artifactId>
 147       <version>2.0.0</version>
 148     </dependency>
 149     <dependency>
 150       <groupId>info.bioinfweb.commons.java</groupId>
 151       <artifactId>bioinfweb-commons-java-swing</artifactId>
 152       <version>2.2.0</version>
 153     </dependency>
 154
 155     <!-- TIC -->
 156     <dependency>
 157       <groupId>info.bioinfweb.tic</groupId>
 158       <artifactId>tic-core</artifactId>
 159       <version>2.0.0</version>
 160     </dependency>
 161     <dependency>
 162       <groupId>info.bioinfweb.tic</groupId>
 163       <artifactId>tic-swt</artifactId>
 164       <version>2.0.0</version>
 165     </dependency>
 166
 167     <!-- BioJava -->
 168     <dependency>
 169       <groupId>org.biojava</groupId>
 170       <artifactId>core</artifactId>
 171       <version>1.9.2</version>
 172     </dependency>
 173     <dependency>
 174       <groupId>org.biojava</groupId>
 175       <artifactId>sequencing</artifactId>
 176       <version>1.9.2</version>
 177     </dependency>
 178
 179     <!-- LibrAlign -->
 180     <dependency>
 181       <groupId>info.bioinfweb.libralign</groupId>
 182       <artifactId>libralign-core</artifactId>
 183       <version>0.4.0</version>
 184     </dependency>
 185     <dependency>
 186       <groupId>info.bioinfweb.libralign</groupId>
 187       <artifactId>libralign-swt</artifactId>
 188       <version>0.4.0</version>
 189     </dependency>
 190     <dependency>
 191       <groupId>info.bioinfweb.libralign</groupId>
 192       <artifactId>libralign-biojava1</artifactId>
 193       <version>0.4.0</version>
 194     </dependency>
 195     <dependency>
 196       <groupId>info.bioinfweb.libralign</groupId>
 197       <artifactId>libralign-io</artifactId>
 198       <version>0.4.0</version>
 199     </dependency>
 200
 201     <!-- JPhyloIO -->
 202     <dependency>
 203       <groupId>info.bioinfweb.jphyloio</groupId>
 204       <artifactId>jphyloio-core</artifactId>
 205       <version>0.3.0</version>
 206     </dependency>
 207     <dependency>
 208       <groupId>info.bioinfweb.thirdparty.owlapi</groupId>
 209       <artifactId>owlapi-xmlutils</artifactId>
 210       <version>4.1.4</version>
 211     </dependency>
 212   </dependencies>
 213
 214   <repositories>
 215     <repository>
 216       <id>bioinfweb-maven-repo</id>
 217       <name>bioinfweb repository</name>
 218       <url>http://bioinfweb.info/MavenRepository/</url>
 219     </repository>
 220     <!-- <repository>
 221       <id>central-maven-repo</id>
 222       <name>Maven Central</name>
 223       <url>http://central.maven.org/maven2/</url>
 224     </repository> -->
 225   </repositories>
 226 </project>
 227