eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/PherogramViewPart.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9 package eu.etaxonomy.taxeditor.editor.molecular;
  10
  11
  12 import info.bioinfweb.libralign.pherogram.PherogramFormats.QualityOutputType;
  13 import info.bioinfweb.libralign.pherogram.model.PherogramComponentModel;
  14 import info.bioinfweb.libralign.pherogram.view.PherogramView;
  15 import info.bioinfweb.tic.SWTComponentFactory;
  16
  17 import org.eclipse.swt.SWT;
  18 import org.eclipse.swt.widgets.Composite;
  19 import org.eclipse.ui.PartInitException;
  20 import org.eclipse.ui.PlatformUI;
  21 import org.eclipse.ui.part.ViewPart;
  22
  23
  24
  25 /**
  26  * Component that allows to view a pherogram without the distortion due to aligning it to a sequence as in
  27  * {@link AlignmentEditor}.
  28  *
  29  * @author Ben Stöver
  30  * @date Nov 20, 2014
  31  */
  32 public class PherogramViewPart extends ViewPart {
  33     public static final String ID = "eu.etaxonomy.taxeditor.editor.molecular.PherogramView";
  34
  35     private PherogramView pherogramView = null;
  36
  37
  38     public static PherogramViewPart createView(PherogramComponentModel model) throws PartInitException {
  39         PherogramViewPart view = (PherogramViewPart)PlatformUI.getWorkbench().getActiveWorkbenchWindow().getActivePage().showView(ID);
  40         view.getPherogramView().getTraceCurveView().setModel(model);
  41         view.getPherogramView().assignSize();
  42         return view;
  43     }
  44
  45
  46         public PherogramView getPherogramView() {
  47                 if (pherogramView == null) {
  48                         pherogramView = new PherogramView();
  49                         pherogramView.getTraceCurveView().getFormats().setShowProbabilityValues(true);
  50                         pherogramView.getTraceCurveView().setHorizontalScale(1);
  51                         pherogramView.getTraceCurveView().setVerticalScale(100);
  52                         pherogramView.getTraceCurveView().getFormats().setQualityOutputType(QualityOutputType.NONE);  //TODO Make this user defined
  53                         pherogramView.getTraceCurveView().getFormats().setShowProbabilityValues(false);
  54                 }
  55                 return pherogramView;
  56         }
  57
  58
  59         @Override
  60         public void createPartControl(Composite parent) {
  61                 SWTComponentFactory.getInstance().getSWTComponent(getPherogramView(), parent, SWT.NONE);
  62                 getPherogramView().assignSize();
  63         }
  64
  65
  66         @Override
  67         public void setFocus() {}  // nothing to do
  68 }