eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/TissueSampleGeneralDetailElement.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2013 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10 package eu.etaxonomy.taxeditor.ui.section.occurrence.dna;
  11
  12 import org.apache.log4j.Logger;
  13
  14 import eu.etaxonomy.cdm.api.service.IVocabularyService;
  15 import eu.etaxonomy.cdm.model.agent.AgentBase;
  16 import eu.etaxonomy.cdm.model.agent.Institution;
  17 import eu.etaxonomy.cdm.model.common.DefinedTerm;
  18 import eu.etaxonomy.cdm.model.common.TermType;
  19 import eu.etaxonomy.cdm.model.common.TermVocabulary;
  20 import eu.etaxonomy.cdm.model.common.TimePeriod;
  21 import eu.etaxonomy.cdm.model.common.VocabularyEnum;
  22 import eu.etaxonomy.cdm.model.molecular.DnaSample;
  23 import eu.etaxonomy.cdm.model.occurrence.Collection;
  24 import eu.etaxonomy.cdm.model.occurrence.PreservationMethod;
  25 import eu.etaxonomy.taxeditor.store.CdmStore;
  26 import eu.etaxonomy.taxeditor.ui.combo.TermComboElement;
  27 import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory;
  28 import eu.etaxonomy.taxeditor.ui.element.CheckboxElement;
  29 import eu.etaxonomy.taxeditor.ui.element.ICdmFormElement;
  30 import eu.etaxonomy.taxeditor.ui.element.TextWithLabelElement;
  31 import eu.etaxonomy.taxeditor.ui.element.TimePeriodElement;
  32 import eu.etaxonomy.taxeditor.ui.section.AbstractCdmDetailElement;
  33 import eu.etaxonomy.taxeditor.ui.selection.EntitySelectionElement;
  34
  35 /**
  36  * @author pplitzner
  37  * @date 16.12.2013
  38  *
  39  */
  40 public class TissueSampleGeneralDetailElement extends AbstractCdmDetailElement<DnaSample> {
  41
  42     private final TermVocabulary plantKindOfUnitVocabulary = CdmStore.getService(IVocabularyService.class).find(VocabularyEnum.PlantKindOfUnit.getUuid());
  43
  44     static private final Logger logger = Logger.getLogger(TissueSampleGeneralDetailElement.class);
  45
  46     private TermComboElement<DefinedTerm> comboKindOfTissue;
  47     private EntitySelectionElement<Institution> selectionInstitution;
  48     private EntitySelectionElement<AgentBase> selectionStaff;
  49     private TimePeriodElement datePreparation;
  50     private TermComboElement<DefinedTerm> comboPreservationMedium;
  51     private EntitySelectionElement<Collection> selectionCollection;
  52     private TextWithLabelElement textAccessionNumber;
  53     private TextWithLabelElement textBarcode;
  54     private CheckboxElement checkIsPublish;
  55
  56
  57     /**
  58      * @param formFactory
  59      * @param formElement
  60      */
  61     public TissueSampleGeneralDetailElement(CdmFormFactory formFactory, ICdmFormElement formElement) {
  62         super(formFactory, formElement);
  63     }
  64
  65     /*
  66      * (non-Javadoc)
  67      *
  68      * @see
  69      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
  70      * (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
  71      */
  72     @Override
  73     protected void createControls(ICdmFormElement formElement, DnaSample entity, int style) {
  74         comboKindOfTissue = formFactory.createDefinedTermComboElement(plantKindOfUnitVocabulary, formElement, "Kind Of Tissue", entity.getKindOfUnit(), style);
  75         TimePeriod preparationDate = null;
  76         DefinedTerm preservationMedium = null;
  77         AgentBase<?> staff = null;
  78         Institution institution = null;
  79         if(entity.getDerivedFrom()!=null){
  80             staff = entity.getDerivedFrom().getActor();
  81             preparationDate = entity.getDerivedFrom().getTimeperiod();
  82             institution = entity.getDerivedFrom().getInstitution();
  83         }
  84         if(entity.getPreservation()!=null){
  85             preservationMedium = entity.getPreservation().getMedium();
  86         }
  87         selectionInstitution = formFactory.createSelectionElement(Institution.class, getConversationHolder(), formElement, "Institution", institution, EntitySelectionElement.ALL, style);
  88         selectionStaff = formFactory.createSelectionElement(AgentBase.class, getConversationHolder(), formElement, "Staff", staff, EntitySelectionElement.ALL,style);
  89         datePreparation = formFactory.createTimePeriodElement(formElement, "Preparation date", preparationDate, style);
  90         comboPreservationMedium = formFactory.createDefinedTermComboElement(TermType.MaterialOrMethod, formElement, "Preservation medium", preservationMedium, style);
  91         selectionCollection = formFactory.createSelectionElement(Collection.class, getConversationHolder(), formElement, "Collection", entity.getCollection(), EntitySelectionElement.ALL, style);
  92         textAccessionNumber = formFactory.createTextWithLabelElement(formElement, "Accession Number", entity.getAccessionNumber(), style);
  93         textBarcode = formFactory.createTextWithLabelElement(formElement, "Barcode", entity.getBarcode(), style);
  94         checkIsPublish = formFactory.createCheckbox(formElement, "Publish", entity.isPublish(), style);
  95
  96     }
  97
  98     /*
  99      * (non-Javadoc)
 100      *
 101      * @see
 102      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
 103      * .lang.Object)
 104      */
 105     @Override
 106     public void handleEvent(Object eventSource) {
 107         if(eventSource==comboKindOfTissue) {
 108             getEntity().setKindOfUnit(comboKindOfTissue.getSelection());
 109         }
 110         else if(eventSource==comboPreservationMedium) {
 111             addPreservationMethod().setMedium(comboPreservationMedium.getSelection());
 112         }
 113         else if(eventSource==selectionCollection){
 114             getEntity().setCollection(selectionCollection.getSelection());
 115         }
 116         else if(eventSource==textAccessionNumber){
 117             getEntity().setAccessionNumber(textAccessionNumber.getText());
 118         }
 119         else if(eventSource==textBarcode){
 120             getEntity().setBarcode(textBarcode.getText());
 121         }
 122         else if(eventSource==datePreparation){
 123             if(getEntity().getDerivedFrom()!=null){
 124                 getEntity().getDerivedFrom().setTimeperiod(datePreparation.getTimePeriod());
 125             }
 126         }
 127         else if(eventSource==selectionInstitution){
 128             if(getEntity().getDerivedFrom()!=null){
 129                 getEntity().getDerivedFrom().setInstitution(selectionInstitution.getSelection());
 130             }
 131         }
 132         else if(eventSource==selectionStaff){
 133             if(getEntity().getDerivedFrom()!=null){
 134                 getEntity().getDerivedFrom().setActor(selectionStaff.getSelection());
 135             }
 136         }
 137         else if(eventSource==checkIsPublish){
 138             getEntity().setPublish(checkIsPublish.getSelection());
 139         }
 140     }
 141
 142     private PreservationMethod addPreservationMethod(){
 143         PreservationMethod preservationMethod = null;
 144         preservationMethod = getEntity().getPreservation();
 145         if(getEntity().getPreservation()==null){
 146             preservationMethod = PreservationMethod.NewInstance();
 147             getEntity().setPreservation(preservationMethod);
 148         }
 149         return preservationMethod;
 150     }
 151 }