eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/derivateSearch/DerivateLabelProvider.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2013 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10 package eu.etaxonomy.taxeditor.view.derivateSearch;
  11
  12 import java.util.List;
  13 import java.util.Set;
  14 import java.util.UUID;
  15
  16 import org.eclipse.jface.viewers.ColumnLabelProvider;
  17 import org.eclipse.jface.viewers.TreeNode;
  18 import org.eclipse.swt.graphics.Image;
  19 import org.hibernate.LazyInitializationException;
  20
  21 import eu.etaxonomy.cdm.api.conversation.ConversationHolder;
  22 import eu.etaxonomy.cdm.api.service.IOccurrenceService;
  23 import eu.etaxonomy.cdm.model.common.DefinedTerm;
  24 import eu.etaxonomy.cdm.model.molecular.DnaSample;
  25 import eu.etaxonomy.cdm.model.molecular.Sequence;
  26 import eu.etaxonomy.cdm.model.molecular.SingleRead;
  27 import eu.etaxonomy.cdm.model.occurrence.Collection;
  28 import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
  29 import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
  30 import eu.etaxonomy.cdm.model.occurrence.GatheringEvent;
  31 import eu.etaxonomy.cdm.model.occurrence.MediaSpecimen;
  32 import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
  33 import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
  34 import eu.etaxonomy.taxeditor.model.ImageResources;
  35 import eu.etaxonomy.taxeditor.store.CdmStore;
  36
  37 /**
  38  * Label provider for the views to show {@link SpecimenOrObservationBase}s.<br>
  39  * <br>
  40  * <b>Note:</b> If you use this label provider you need to assure that you
  41  * created a {@link ConversationHolder} resp. have an open session because
  42  * the labels are generated from various fields of the derivate hierarchy which
  43  * are lazy loaded and could therefore throw a {@link LazyInitializationException}.<br>
  44  * Use <b>{@link #setConversation(ConversationHolder)}</b> to assign the session to this provider.
  45  */
  46 public class DerivateLabelProvider extends ColumnLabelProvider {
  47
  48     private Set<SingleRead> multiLinkSingleReads;
  49
  50     private ConversationHolder conversation;
  51
  52     private static DefinedTerm photoTerm = null;
  53     private static DefinedTerm drawingTerm = null;
  54     private static DefinedTerm specimenScanTerm = null;
  55     private static DefinedTerm detailImageTerm = null;
  56
  57     private static void initializeTerms() {
  58         List<DefinedTerm> preferredTerms = CdmStore.getTermManager().getPreferredTerms(DefinedTerm.class);
  59         for (DefinedTerm definedTerm : preferredTerms) {
  60             if(definedTerm.getUuid().equals(UUID.fromString("c5c59c42-f254-471e-96c6-09f459f7c903"))){
  61                 photoTerm = definedTerm;
  62             }
  63             else if(definedTerm.getUuid().equals(UUID.fromString("669b0409-4aa4-4695-aae4-a95ed27bad4c"))){
  64                 drawingTerm = definedTerm;
  65             }
  66             else if(definedTerm.getUuid().equals(UUID.fromString("acda15be-c0e2-4ea8-8783-b9b0c4ad7f03"))){
  67                 specimenScanTerm = definedTerm;
  68             }
  69             else if(definedTerm.getUuid().equals(UUID.fromString("31eb8d02-bf5d-437c-bcc6-87a626445f34"))){
  70                 detailImageTerm = definedTerm;
  71             }
  72         }
  73     }
  74
  75     public static DefinedTerm getLivingPlantPhotoTerm(){
  76         if(photoTerm==null){
  77             initializeTerms();
  78         }
  79         return photoTerm;
  80     }
  81
  82     public static DefinedTerm getArtworkTerm(){
  83         if(drawingTerm==null){
  84             initializeTerms();
  85         }
  86         return drawingTerm;
  87     }
  88
  89     public static DefinedTerm getSpecimenScanTerm(){
  90         if(specimenScanTerm==null){
  91             initializeTerms();
  92         }
  93         return specimenScanTerm;
  94     }
  95
  96     public static DefinedTerm getDetailImageTerm(){
  97         if(detailImageTerm==null){
  98             initializeTerms();
  99         }
 100         return detailImageTerm;
 101     }
 102
 103
 104     /** {@inheritDoc} */
 105     @Override
 106     public String getText(Object element) {
 107         return getDerivateText(element);
 108     }
 109
 110     /** {@inheritDoc} */
 111     @Override
 112     public String getToolTipText(Object element) {
 113         return getDerivateText(element);
 114     }
 115
 116     /**
 117      * @param conversation the conversation to set
 118      */
 119     public void setConversation(ConversationHolder conversation) {
 120         this.conversation = conversation;
 121     }
 122
 123     /**
 124      *
 125      * @param element
 126      * @return
 127      */
 128     public String getDerivateText(Object element){
 129         if(element instanceof TreeNode){
 130             //unwrap specimen from TreeNode
 131             element = ((TreeNode) element).getValue();
 132         }
 133
 134         conversation.bind();
 135
 136         String label = "";
 137         if(element instanceof FieldUnit){
 138             FieldUnit fieldUnit = (FieldUnit)element;
 139             if(fieldUnit.getGatheringEvent()!=null){
 140                 GatheringEvent gatheringEvent = fieldUnit.getGatheringEvent();
 141                 if(!conversation.getSession().contains(gatheringEvent)){
 142                     fieldUnit = (FieldUnit) CdmStore.getService(IOccurrenceService.class).load(fieldUnit.getUuid());
 143                     gatheringEvent = fieldUnit.getGatheringEvent();
 144                 }
 145                 label += gatheringEvent.getCountry()!=null?gatheringEvent.getCountry().getLabel()+", ":"";
 146                 label += gatheringEvent.getLocality()!=null?gatheringEvent.getLocality().getText()+", ":"";
 147                 label += gatheringEvent.getGatheringDate()!=null?gatheringEvent.getGatheringDate()+", ":"";
 148                 label += gatheringEvent.getCollector()!=null?gatheringEvent.getCollector()+", ":"";
 149             }
 150             label += fieldUnit.getFieldNumber()!=null?fieldUnit.getFieldNumber():"";
 151         }
 152         else if(element instanceof MediaSpecimen){
 153             MediaSpecimen mediaSpecimen = (MediaSpecimen)element;
 154             if(mediaSpecimen.getMediaSpecimen()!=null){
 155                 label += mediaSpecimen.getMediaSpecimen().getTitle()!=null?mediaSpecimen.getMediaSpecimen().getTitle().getText()+", ":"[no motif]";
 156                 label += mediaSpecimen.getMediaSpecimen().getArtist()!=null?mediaSpecimen.getMediaSpecimen().getArtist()+", ":"";
 157             }
 158             label += mediaSpecimen.getAccessionNumber()!=null?mediaSpecimen.getAccessionNumber()+", ":"";
 159             Collection collection = mediaSpecimen.getCollection();
 160             if(collection!=null){
 161                 label += collection.getName()!=null?collection.getName()+" ":"";
 162             }
 163         }
 164         else if(element instanceof DnaSample
 165                 || (element instanceof DerivedUnit
 166                         && ((SpecimenOrObservationBase<?>) element).getRecordBasis()==SpecimenOrObservationType.DnaSample)){
 167             //TODO implement
 168             label += element.toString();
 169
 170         }
 171         else if(element instanceof DerivedUnit){
 172             DerivedUnit derivedUnit = (DerivedUnit)element;
 173             if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.PreservedSpecimen){
 174                 java.util.Collection<FieldUnit> fieldUnits = CdmStore.getService(IOccurrenceService.class).getFieldUnits(derivedUnit.getUuid());
 175                 if(fieldUnits!=null && !fieldUnits.isEmpty()){
 176                     FieldUnit fieldUnit = fieldUnits.iterator().next();
 177                     GatheringEvent gatheringEvent = fieldUnit.getGatheringEvent();
 178                     if(gatheringEvent!=null){
 179                         label += gatheringEvent.getCollector()!=null?gatheringEvent.getCollector()+", ":"";
 180                     }
 181                     label += fieldUnit.getFieldNumber()!=null?fieldUnit.getFieldNumber()+", ":"";
 182                 }
 183                 Collection collection = derivedUnit.getCollection();
 184                 if(collection!=null){
 185                     label += collection.getName()!=null?collection.getName()+" ":"";
 186                     label += collection.getCode()!=null?"("+collection.getCode()+"), ":"";
 187                 }
 188                 label += derivedUnit.getAccessionNumber()!=null?derivedUnit.getAccessionNumber()+", ":"";
 189                 label += derivedUnit.getBarcode()!=null?derivedUnit.getBarcode():"";
 190             }
 191             else if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.TissueSample){
 192                 //TODO: implement
 193 //                kindofTissue + SampleDesignation
 194             }
 195         }
 196         else if(element instanceof Sequence){
 197             Sequence sequence = (Sequence)element;
 198             label += "SampleDesignation?"+", ";
 199             label += sequence.getDnaMarker()!=null?sequence.getDnaMarker():"";
 200         }
 201         else if(element instanceof SingleRead){
 202             SingleRead singleRead = (SingleRead)element;
 203             label += singleRead.getPrimer()!=null?singleRead.getPrimer().getLabel()+", ":"";
 204             label += "Marker?";
 205         }
 206         else if(element instanceof SpecimenOrObservationBase){
 207             SpecimenOrObservationBase<?> derivate = (SpecimenOrObservationBase<?>) element;
 208             SpecimenOrObservationType type = derivate.getRecordBasis();
 209             return derivate.getTitleCache() + (type!=null?" ["+type.toString()+"]":"");
 210         }
 211         if(label.isEmpty()){
 212             label = element.toString();
 213         }
 214         //remove last comma
 215         else if(label.endsWith(", ")){
 216             label = label.substring(0, label.length()-2);
 217         }
 218         return label;
 219     }
 220
 221     /* (non-Javadoc)
 222      * @see org.eclipse.jface.viewers.ColumnLabelProvider#getImage(java.lang.Object)
 223      */
 224     @Override
 225     public Image getImage(Object element) {
 226         if(element instanceof TreeNode){
 227             element = ((TreeNode) element).getValue();
 228         }
 229         if(element instanceof FieldUnit){
 230             return ImageResources.getImage(ImageResources.FIELD_UNIT);
 231         }
 232         else if(element instanceof DerivedUnit){
 233             DerivedUnit derivedUnit = (DerivedUnit)element;
 234             if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.FieldUnit){
 235                 return ImageResources.getImage(ImageResources.FIELD_UNIT);
 236             }
 237             else if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.DnaSample){
 238                 return ImageResources.getImage(ImageResources.DNA_SAMPLE_DERIVATE);
 239             }
 240             else if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.TissueSample){
 241                 return ImageResources.getImage(ImageResources.TISSUE_SAMPLE_DERIVATE);
 242             }
 243             else if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.PreservedSpecimen){
 244                 return ImageResources.getImage(ImageResources.SPECIMEN_DERIVATE);
 245             }
 246             else if(derivedUnit.getRecordBasis()==SpecimenOrObservationType.Media){
 247                 if(derivedUnit.getKindOfUnit()!=null){
 248                     if(derivedUnit.getKindOfUnit().equals(getArtworkTerm())){
 249                         return ImageResources.getImage(ImageResources.ARTWORK_DERIVATE);
 250                     }
 251                     else if(derivedUnit.getKindOfUnit().equals(getLivingPlantPhotoTerm())){
 252                         return ImageResources.getImage(ImageResources.LIVING_PLANT_PHOTO_DERIVATE);
 253                     }
 254                     else if(derivedUnit.getKindOfUnit().equals(getSpecimenScanTerm())){
 255                         return ImageResources.getImage(ImageResources.SPECIMEN_SCAN_DERIVATE);
 256                     }
 257                     else if(derivedUnit.getKindOfUnit().equals(getDetailImageTerm())){
 258                         return ImageResources.getImage(ImageResources.DETAIL_IMAGE_DERIVATE);
 259                     }
 260                 }
 261             }
 262         }
 263         else if(element instanceof Sequence){
 264             return ImageResources.getImage(ImageResources.SEQUENCE_DERIVATE);
 265         }
 266
 267         else if(element instanceof SingleRead){
 268             if(multiLinkSingleReads.contains(element)){
 269                 return ImageResources.getImage(ImageResources.SINGLE_READ_DERIVATE_MULTILINK);
 270             }
 271             else{
 272                 return ImageResources.getImage(ImageResources.SINGLE_READ_DERIVATE);
 273             }
 274         }
 275         return super.getImage(element);
 276     }
 277
 278     /**
 279      * @param multiLinkSingleReads2
 280      */
 281     public void setMultiLinkSingleReads(Set<SingleRead> multiLinkSingleReads) {
 282         this.multiLinkSingleReads = multiLinkSingleReads;
 283     }
 284
 285 }