3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.editor
.view
.dataimport
.transientServices
;
12 import java
.io
.IOException
;
13 import java
.util
.Collection
;
14 import java
.util
.HashSet
;
15 import java
.util
.List
;
18 import java
.util
.UUID
;
20 import org
.apache
.lucene
.index
.CorruptIndexException
;
21 import org
.apache
.lucene
.queryParser
.ParseException
;
22 import org
.hibernate
.LockOptions
;
23 import org
.hibernate
.Session
;
24 import org
.hibernate
.criterion
.Criterion
;
25 import org
.hibernate
.envers
.query
.criteria
.AuditCriterion
;
26 import org
.hibernate
.search
.spatial
.impl
.Rectangle
;
28 import eu
.etaxonomy
.cdm
.api
.facade
.DerivedUnitFacade
;
29 import eu
.etaxonomy
.cdm
.api
.facade
.DerivedUnitFacadeNotSupportedException
;
30 import eu
.etaxonomy
.cdm
.api
.service
.DeleteResult
;
31 import eu
.etaxonomy
.cdm
.api
.service
.IOccurrenceService
;
32 import eu
.etaxonomy
.cdm
.api
.service
.config
.DeleteConfiguratorBase
;
33 import eu
.etaxonomy
.cdm
.api
.service
.config
.IIdentifiableEntityServiceConfigurator
;
34 import eu
.etaxonomy
.cdm
.api
.service
.pager
.Pager
;
35 import eu
.etaxonomy
.cdm
.api
.service
.search
.SearchResult
;
36 import eu
.etaxonomy
.cdm
.api
.service
.util
.TaxonRelationshipEdge
;
37 import eu
.etaxonomy
.cdm
.common
.monitor
.IProgressMonitor
;
38 import eu
.etaxonomy
.cdm
.model
.common
.Annotation
;
39 import eu
.etaxonomy
.cdm
.model
.common
.ICdmBase
;
40 import eu
.etaxonomy
.cdm
.model
.common
.ISourceable
;
41 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableSource
;
42 import eu
.etaxonomy
.cdm
.model
.common
.LSID
;
43 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
44 import eu
.etaxonomy
.cdm
.model
.common
.Marker
;
45 import eu
.etaxonomy
.cdm
.model
.common
.MarkerType
;
46 import eu
.etaxonomy
.cdm
.model
.common
.UuidAndTitleCache
;
47 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionBase
;
48 import eu
.etaxonomy
.cdm
.model
.location
.Country
;
49 import eu
.etaxonomy
.cdm
.model
.media
.Media
;
50 import eu
.etaxonomy
.cdm
.model
.media
.Rights
;
51 import eu
.etaxonomy
.cdm
.model
.molecular
.DnaSample
;
52 import eu
.etaxonomy
.cdm
.model
.molecular
.Sequence
;
53 import eu
.etaxonomy
.cdm
.model
.occurrence
.DerivationEvent
;
54 import eu
.etaxonomy
.cdm
.model
.occurrence
.DerivedUnit
;
55 import eu
.etaxonomy
.cdm
.model
.occurrence
.DeterminationEvent
;
56 import eu
.etaxonomy
.cdm
.model
.occurrence
.FieldUnit
;
57 import eu
.etaxonomy
.cdm
.model
.occurrence
.SpecimenOrObservationBase
;
58 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
59 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonBase
;
60 import eu
.etaxonomy
.cdm
.model
.view
.AuditEvent
;
61 import eu
.etaxonomy
.cdm
.model
.view
.AuditEventRecord
;
62 import eu
.etaxonomy
.cdm
.persistence
.dao
.common
.AuditEventSort
;
63 import eu
.etaxonomy
.cdm
.persistence
.query
.Grouping
;
64 import eu
.etaxonomy
.cdm
.persistence
.query
.MatchMode
;
65 import eu
.etaxonomy
.cdm
.persistence
.query
.OrderHint
;
66 import eu
.etaxonomy
.cdm
.strategy
.cache
.common
.IIdentifiableEntityCacheStrategy
;
67 import eu
.etaxonomy
.cdm
.strategy
.match
.IMatchStrategy
;
68 import eu
.etaxonomy
.cdm
.strategy
.merge
.IMergeStrategy
;
75 public class TransientOccurenceService
implements IOccurrenceService
{
77 private final IOccurrenceService defaultService
;
78 private final Collection
<SpecimenOrObservationBase
<?
>> units
;
81 * @param defaultService
83 public TransientOccurenceService(IOccurrenceService defaultService
) {
84 this.defaultService
= defaultService
;
85 this.units
= new HashSet
<SpecimenOrObservationBase
<?
>>();
93 * @param propertyPaths
95 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
98 public Pager
<AuditEventRecord
<SpecimenOrObservationBase
>> pageAuditEvents(SpecimenOrObservationBase t
, Integer pageSize
, Integer pageNumber
, AuditEventSort sort
, List
<String
> propertyPaths
) {
99 return defaultService
.pageAuditEvents(t
, pageSize
, pageNumber
, sort
, propertyPaths
);
103 * @param annotatedObj
108 * @param propertyPaths
110 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
113 public Pager
<Annotation
> getAnnotations(SpecimenOrObservationBase annotatedObj
, MarkerType status
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
114 return defaultService
.getAnnotations(annotatedObj
, status
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
119 * @see eu.etaxonomy.cdm.api.service.IService#clear()
122 public void clear() {
123 defaultService
.clear();
129 * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
132 public void lock(SpecimenOrObservationBase t
, LockOptions lockOptions
) {
133 defaultService
.lock(t
, lockOptions
);
139 * @param propertyPaths
140 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
143 public void refresh(SpecimenOrObservationBase t
, LockOptions lockOptions
, List
<String
> propertyPaths
) {
144 defaultService
.refresh(t
, lockOptions
, propertyPaths
);
149 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
152 public void updateTitleCache() {
153 defaultService
.updateTitleCache();
159 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
162 public AuditEventRecord
<SpecimenOrObservationBase
> getNextAuditEvent(SpecimenOrObservationBase t
) {
163 return defaultService
.getNextAuditEvent(t
);
167 * @param annotatableEntity
172 * @param propertyPaths
174 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
177 public Pager
<Marker
> getMarkers(SpecimenOrObservationBase annotatableEntity
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
178 return defaultService
.getMarkers(annotatableEntity
, technical
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
184 * @param cacheStrategy
186 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
189 public void updateTitleCache(Class
<?
extends SpecimenOrObservationBase
> clazz
, Integer stepSize
, IIdentifiableEntityCacheStrategy
<SpecimenOrObservationBase
> cacheStrategy
, IProgressMonitor monitor
) {
190 defaultService
.updateTitleCache(clazz
, stepSize
, cacheStrategy
, monitor
);
196 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
199 public AuditEventRecord
<SpecimenOrObservationBase
> getPreviousAuditEvent(SpecimenOrObservationBase t
) {
200 return defaultService
.getPreviousAuditEvent(t
);
206 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByIso(java.lang.String)
209 public Country
getCountryByIso(String iso639
) {
210 return defaultService
.getCountryByIso(iso639
);
216 * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
219 public int count(Class
<?
extends SpecimenOrObservationBase
> clazz
) {
220 return defaultService
.count(clazz
);
226 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByName(java.lang.String)
229 public List
<Country
> getCountryByName(String name
) {
230 return defaultService
.getCountryByName(name
);
235 * @param determinedAs
239 * @param propertyPaths
241 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#list(java.lang.Class, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
244 public Pager
<SpecimenOrObservationBase
> list(Class
<?
extends SpecimenOrObservationBase
> type
, TaxonBase determinedAs
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
245 return defaultService
.list(type
, determinedAs
, limit
, start
, orderHints
, propertyPaths
);
256 * @param propertyPaths
258 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
261 public Pager
<AuditEventRecord
<SpecimenOrObservationBase
>> pageAuditEvents(Class
<?
extends SpecimenOrObservationBase
> clazz
, AuditEvent from
, AuditEvent to
, List
<AuditCriterion
> criteria
, Integer pageSize
, Integer pageValue
, AuditEventSort sort
, List
<String
> propertyPaths
) {
262 return defaultService
.pageAuditEvents(clazz
, from
, to
, criteria
, pageSize
, pageValue
, sort
, propertyPaths
);
268 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
271 public SpecimenOrObservationBase
find(LSID lsid
) {
272 return defaultService
.find(lsid
);
276 * @param persistentObject
278 * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
281 public DeleteResult
delete(SpecimenOrObservationBase persistentObject
) {
282 return defaultService
.delete(persistentObject
);
290 * @param propertyPaths
292 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
295 public List
<Object
[]> groupMarkers(Class
<?
extends SpecimenOrObservationBase
> clazz
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
296 return defaultService
.groupMarkers(clazz
, technical
, pageSize
, pageNumber
, propertyPaths
);
302 * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
305 public boolean exists(UUID uuid
) {
306 return defaultService
.exists(uuid
);
313 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
316 public SpecimenOrObservationBase
replace(SpecimenOrObservationBase x
, SpecimenOrObservationBase y
) {
317 return defaultService
.replace(x
, y
);
323 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
326 public List
<SpecimenOrObservationBase
> find(Set
<UUID
> uuidSet
) {
327 return defaultService
.find(uuidSet
);
334 * @param propertyPaths
336 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
339 public Pager
<IdentifiableSource
> getSources(SpecimenOrObservationBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
340 return defaultService
.getSources(t
, pageSize
, pageNumber
, propertyPaths
);
346 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
349 public SpecimenOrObservationBase
find(UUID uuid
) {
350 return defaultService
.find(uuid
);
356 * @see eu.etaxonomy.cdm.api.service.IService#find(int)
359 public SpecimenOrObservationBase
find(int id
) {
360 return defaultService
.find(id
);
367 * @param propertyPaths
369 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
372 public Pager
<Rights
> getRights(SpecimenOrObservationBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
373 return defaultService
.getRights(t
, pageSize
, pageNumber
, propertyPaths
);
380 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
383 public int countMarkers(Class
<?
extends SpecimenOrObservationBase
> clazz
, Boolean technical
) {
384 return defaultService
.countMarkers(clazz
, technical
);
391 * @param propertyPaths
393 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getMedia(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
396 public Pager
<Media
> getMedia(SpecimenOrObservationBase occurence
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
397 return defaultService
.getMedia(occurence
, pageSize
, pageNumber
, propertyPaths
);
403 * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
406 public List
<SpecimenOrObservationBase
> findById(Set
<Integer
> idSet
) {
407 return defaultService
.findById(idSet
);
415 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
418 public ISourceable
getSourcedObjectByIdInSource(Class clazz
, String idInSource
, String idNamespace
) {
419 return defaultService
.getSourcedObjectByIdInSource(clazz
, idInSource
, idNamespace
);
424 * @see eu.etaxonomy.cdm.api.service.IService#getSession()
427 public Session
getSession() {
428 return defaultService
.getSession();
433 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
436 public List
<UuidAndTitleCache
<SpecimenOrObservationBase
>> getUuidAndTitleCache() {
437 return defaultService
.getUuidAndTitleCache();
445 * @param propertyPaths
447 * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
450 public List
<Object
[]> group(Class
<?
extends SpecimenOrObservationBase
> clazz
, Integer limit
, Integer start
, List
<Grouping
> groups
, List
<String
> propertyPaths
) {
451 return defaultService
.group(clazz
, limit
, start
, groups
, propertyPaths
);
459 * @param propertyPaths
461 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDeterminations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
464 public Pager
<DeterminationEvent
> getDeterminations(SpecimenOrObservationBase occurence
, TaxonBase taxonBase
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
465 return defaultService
.getDeterminations(occurence
, taxonBase
, pageSize
, pageNumber
, propertyPaths
);
476 * @param propertyPaths
478 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
481 public Pager
<SpecimenOrObservationBase
> findByTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
482 return defaultService
.findByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
489 * @param propertyPaths
491 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivationEvents(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
494 public Pager
<DerivationEvent
> getDerivationEvents(SpecimenOrObservationBase occurence
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
495 return defaultService
.getDerivationEvents(occurence
, pageSize
, pageNumber
, propertyPaths
);
503 * @param propertyPaths
505 * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
508 public <S
extends SpecimenOrObservationBase
> List
<S
> list(Class
<S
> type
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
509 return defaultService
.list(type
, limit
, start
, orderHints
, propertyPaths
);
518 * @param propertyPaths
520 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
523 public Pager
<SpecimenOrObservationBase
> search(Class
<?
extends SpecimenOrObservationBase
> clazz
, String query
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
524 return defaultService
.search(clazz
, query
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
528 * @param configurator
530 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
533 public Pager
<SpecimenOrObservationBase
> findByTitle(IIdentifiableEntityServiceConfigurator
<SpecimenOrObservationBase
> configurator
) {
534 return defaultService
.findByTitle(configurator
);
543 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
546 public Integer
countByTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
) {
547 return defaultService
.countByTitle(clazz
, queryString
, matchmode
, criteria
);
553 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
556 public SpecimenOrObservationBase
load(UUID uuid
) {
557 return defaultService
.load(uuid
);
562 * @param propertyPaths
564 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
567 public SpecimenOrObservationBase
load(UUID uuid
, List
<String
> propertyPaths
) {
568 return defaultService
.load(uuid
, propertyPaths
);
572 * @param configurator
574 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
577 public Integer
countByTitle(IIdentifiableEntityServiceConfigurator
<SpecimenOrObservationBase
> configurator
) {
578 return defaultService
.countByTitle(configurator
);
583 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnitUuidAndTitleCache()
586 public List
<UuidAndTitleCache
<FieldUnit
>> getFieldUnitUuidAndTitleCache() {
587 return defaultService
.getFieldUnitUuidAndTitleCache();
592 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitUuidAndTitleCache()
595 public List
<UuidAndTitleCache
<DerivedUnit
>> getDerivedUnitUuidAndTitleCache() {
596 return defaultService
.getDerivedUnitUuidAndTitleCache();
600 * @param transientObject
602 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
605 public SpecimenOrObservationBase
merge(SpecimenOrObservationBase transientObject
) {
606 return defaultService
.merge(transientObject
);
611 * @param propertyPaths
613 * @throws DerivedUnitFacadeNotSupportedException
614 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitFacade(eu.etaxonomy.cdm.model.occurrence.DerivedUnit, java.util.List)
617 public DerivedUnitFacade
getDerivedUnitFacade(DerivedUnit derivedUnit
, List
<String
> propertyPaths
) throws DerivedUnitFacadeNotSupportedException
{
618 return defaultService
.getDerivedUnitFacade(derivedUnit
, propertyPaths
);
629 * @param propertyPaths
631 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
634 public List
<SpecimenOrObservationBase
> listByTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
635 return defaultService
.listByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
640 * @param propertyPaths
642 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listDerivedUnitFacades(eu.etaxonomy.cdm.model.description.DescriptionBase, java.util.List)
645 public List
<DerivedUnitFacade
> listDerivedUnitFacades(DescriptionBase description
, List
<String
> propertyPaths
) {
646 return defaultService
.listDerivedUnitFacades(description
, propertyPaths
);
654 * @param propertyPaths
656 * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
659 public <S
extends SpecimenOrObservationBase
> Pager
<S
> page(Class
<S
> type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
660 return defaultService
.page(type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
665 * @param includeRelationships
666 * @param associatedTaxon
671 * @param propertyPaths
673 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
676 public <T
extends SpecimenOrObservationBase
> List
<T
> listByAssociatedTaxon(Class
<T
> type
, Set
<TaxonRelationshipEdge
> includeRelationships
, Taxon associatedTaxon
, Integer maxDepth
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
677 return defaultService
.listByAssociatedTaxon(type
, includeRelationships
, associatedTaxon
, maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
681 * @param persistentObject
683 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
686 public UUID
refresh(SpecimenOrObservationBase persistentObject
) {
687 return defaultService
.refresh(persistentObject
);
698 * @param propertyPaths
700 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
703 public List
<SpecimenOrObservationBase
> listByReferenceTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
704 return defaultService
.listByReferenceTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
712 * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
715 public List
<SpecimenOrObservationBase
> rows(String tableName
, int limit
, int start
) {
716 return defaultService
.rows(tableName
, limit
, start
);
720 * @param newInstances
722 * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
725 public Map
<UUID
, SpecimenOrObservationBase
> save(Collection
<SpecimenOrObservationBase
> newInstances
) {
726 for(SpecimenOrObservationBase unit
:newInstances
){
734 * @param includeRelationships
735 * @param associatedTaxon
740 * @param propertyPaths
742 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
745 public <T
extends SpecimenOrObservationBase
> Pager
<T
> pageByAssociatedTaxon(Class
<T
> type
, Set
<TaxonRelationshipEdge
> includeRelationships
, Taxon associatedTaxon
, Integer maxDepth
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
746 return defaultService
.pageByAssociatedTaxon(type
, includeRelationships
, associatedTaxon
, maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
752 * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
755 public UUID
save(SpecimenOrObservationBase newInstance
) {
756 units
.add(newInstance
);
761 * @param transientObject
763 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
766 public UUID
saveOrUpdate(SpecimenOrObservationBase transientObject
) {
767 units
.add(transientObject
);
772 * @param transientObjects
774 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
777 public Map
<UUID
, SpecimenOrObservationBase
> saveOrUpdate(Collection
<SpecimenOrObservationBase
> transientObjects
) {
778 for(SpecimenOrObservationBase unit
:transientObjects
){
789 * @param highlightFragments
793 * @param propertyPaths
795 * @throws CorruptIndexException
796 * @throws IOException
797 * @throws ParseException
798 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#findByFullText(java.lang.Class, java.lang.String, org.hibernate.search.spatial.impl.Rectangle, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
801 public Pager
<SearchResult
<SpecimenOrObservationBase
>> findByFullText(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, Rectangle boundingBox
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
802 return defaultService
.findByFullText(clazz
, queryString
, boundingBox
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
806 * @param transientObject
808 * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
811 public UUID
update(SpecimenOrObservationBase transientObject
) {
812 return defaultService
.update(transientObject
);
817 * @param includeProperties
821 * @param propertyPaths
823 * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
826 public List
<SpecimenOrObservationBase
> list(SpecimenOrObservationBase example
, Set
<String
> includeProperties
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
827 return defaultService
.list(example
, includeProperties
, limit
, start
, orderHints
, propertyPaths
);
832 * @param matchStrategy
833 * @param mergeStrategy
835 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
838 public int deduplicate(Class
<?
extends SpecimenOrObservationBase
> clazz
, IMatchStrategy matchStrategy
, IMergeStrategy mergeStrategy
) {
839 return defaultService
.deduplicate(clazz
, matchStrategy
, mergeStrategy
);
850 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
853 public Pager
<SpecimenOrObservationBase
> findTitleCache(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, MatchMode matchMode
) {
854 return defaultService
.findTitleCache(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, matchMode
);
860 public Collection
<SpecimenOrObservationBase
<?
>> getUnits() {
865 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnits(java.util.UUID)
868 public Collection
<FieldUnit
> getFieldUnits(UUID derivedUnitUuid
) {
869 return defaultService
.getFieldUnits(derivedUnitUuid
);
873 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, java.lang.String, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
876 public <T
extends SpecimenOrObservationBase
> Pager
<T
> pageByAssociatedTaxon(Class
<T
> type
,
877 Set
<TaxonRelationshipEdge
> includeRelationships
, String taxonUUID
, Integer maxDepth
, Integer pageSize
,
878 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
879 return defaultService
.pageByAssociatedTaxon(type
, includeRelationships
, taxonUUID
,
880 maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
884 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveDerivate(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.DerivedUnit)
887 public boolean moveDerivate(SpecimenOrObservationBase
<?
> from
, SpecimenOrObservationBase
<?
> to
, DerivedUnit derivate
) {
888 return defaultService
.moveDerivate(from
, to
, derivate
);
892 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveSequence(eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.Sequence)
895 public boolean moveSequence(DnaSample from
, DnaSample to
, Sequence sequence
) {
896 return defaultService
.moveSequence(from
, to
, sequence
);
900 public List
<String
> isDeletable(SpecimenOrObservationBase object
,
901 DeleteConfiguratorBase config
) {
902 return defaultService
.isDeletable(object
, config
);
906 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#countDeterminations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.taxon.TaxonBase)
909 public int countDeterminations(SpecimenOrObservationBase occurence
, TaxonBase taxonbase
) {
910 return defaultService
.countDeterminations(occurence
, taxonbase
);
914 public SpecimenOrObservationBase
findWithoutFlush(UUID uuid
) {
915 return defaultService
.findWithoutFlush(uuid
);
919 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getNonCascadedAssociatedElements(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.api.conversation.ConversationHolder)
922 public Collection
<ICdmBase
> getNonCascadedAssociatedElements(SpecimenOrObservationBase
<?
> specimen
) {
923 return defaultService
.getNonCascadedAssociatedElements(specimen
);