eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/dataimport/SpecimenSearchWizard.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2013 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10 package eu.etaxonomy.taxeditor.view.dataimport;
  11
  12 import java.io.IOException;
  13 import java.io.InputStream;
  14 import java.net.URI;
  15
  16 import org.apache.log4j.Logger;
  17 import org.eclipse.core.runtime.IProgressMonitor;
  18 import org.eclipse.core.runtime.IStatus;
  19 import org.eclipse.core.runtime.Status;
  20 import org.eclipse.core.runtime.jobs.Job;
  21 import org.eclipse.jface.viewers.IStructuredSelection;
  22 import org.eclipse.jface.wizard.Wizard;
  23 import org.eclipse.swt.widgets.Display;
  24 import org.eclipse.ui.IImportWizard;
  25 import org.eclipse.ui.IWorkbench;
  26 import org.eclipse.ui.IWorkbenchPage;
  27 import org.eclipse.ui.IWorkbenchWindow;
  28 import org.eclipse.ui.PartInitException;
  29 import org.eclipse.ui.PlatformUI;
  30 import org.w3c.dom.NodeList;
  31
  32 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  33 import eu.etaxonomy.cdm.ext.common.ServiceWrapperBase;
  34 import eu.etaxonomy.cdm.ext.occurrence.OccurenceQuery;
  35 import eu.etaxonomy.cdm.ext.occurrence.bioCase.BioCaseQueryServiceWrapper;
  36 import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
  37 import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportReport;
  38 import eu.etaxonomy.cdm.io.specimen.abcd206.in.AbcdParseUtility;
  39 import eu.etaxonomy.cdm.io.specimen.abcd206.in.UnitAssociationWrapper;
  40
  41 import eu.etaxonomy.taxeditor.store.CdmStore;
  42
  43 /**
  44  * Wizard for querying specimen provider.
  45  * @author pplitzner
  46  * @date 11.09.2013
  47  *
  48  */
  49 public class SpecimenSearchWizard extends Wizard implements IImportWizard {
  50     private static final Logger logger = Logger.getLogger(SpecimenSearchWizard.class);
  51
  52     private OccurenceQuery query = null;
  53     private SpecimenProviderSelectionWizardPage providerSelectionPage;
  54     private SpecimenSearchWizardPage searchPage;
  55
  56     /**
  57      * Creates a new SpecimenSearchWizard
  58      */
  59     public SpecimenSearchWizard() {
  60         //default constructor needed for RCP extension points
  61
  62         //check if connected to a data source. If not this will open an error dialog
  63         CdmStore.getCurrentApplicationConfiguration();
  64         this.setWindowTitle("Search Specimens");
  65     }
  66
  67
  68     /* (non-Javadoc)
  69      * @see org.eclipse.jface.wizard.Wizard#performFinish()
  70      */
  71     @Override
  72     public boolean performFinish() {
  73         searchPage.getController().saveLastSate();
  74         providerSelectionPage.getController().saveLastState();
  75         ServiceWrapperBase serviceWrapper;
  76         DataImportView<?> dataImportView = null;
  77         query = searchPage.getQuery();
  78         Abcd206ImportConfigurator configurator =  CdmStore.getImportManager().AbcdConfigurator();
  79         configurator.setOccurenceQuery(query);
  80         configurator.setSourceUri(providerSelectionPage.getEndPoint());
  81         configurator.setDbSchemaValidation(DbSchemaValidation.CREATE);
  82         if(CdmStore.getCurrentSessionManager().isRemoting() ) {
  83             //Job job = CdmStore.getImportManager().createIOServiceJob(configurator, new File(source), SOURCE_TYPE.INPUTSTREAM);
  84             //CdmStore.getImportManager().run(job);
  85             try {
  86                 serviceWrapper = providerSelectionPage.getQueryServiceWrapper();
  87                 InputStream stream = null;
  88
  89                 final IWorkbenchWindow window = PlatformUI.getWorkbench().getActiveWorkbenchWindow();
  90                 IWorkbenchPage activePart = window.getActivePage();
  91                 if (providerSelectionPage.getQueryType().equals(QueryType.BIOCASE)){
  92                     stream =((BioCaseQueryServiceWrapper) serviceWrapper).query(query, configurator.getSourceUri());
  93                     Abcd206ImportReport report = new Abcd206ImportReport();
  94                     UnitAssociationWrapper unitNodesList = AbcdParseUtility.parseUnitsNodeList(stream, report);
  95                     NodeList nodeList = unitNodesList.getAssociatedUnits();
  96                     String prefix = unitNodesList.getPrefix();
  97                     String associationType = unitNodesList.getAssociationType();
  98                     URI uri =AbcdParseUtility.parseFirstUri(nodeList, report);
  99                     String content = AbcdParseUtility.parseFirstTextContent(nodeList);
 100                     System.out.println(content);
 101
 102
 103                     SpecimenImportView specimenImportView = new SpecimenImportView();
 104                     try {
 105                         specimenImportView = (SpecimenImportView) activePart.showView(SpecimenImportView.ID);
 106                         specimenImportView.setEndpoint(providerSelectionPage.getEndPoint());
 107                         specimenImportView.setQuery(query);
 108                         dataImportView = specimenImportView;
 109                     } catch (PartInitException e) {
 110                         // TODO Auto-generated catch block
 111                         e.printStackTrace();
 112
 113                     }
 114
 115                 } else{
 116                     try {
 117
 118                         dataImportView = (GbifResponseImportView) activePart.showView(GbifResponseImportView.ID, "query_"+query.toString().replaceAll(",", ""), IWorkbenchPage.VIEW_ACTIVATE);
 119                         dataImportView.setQuery(query);
 120                                 //      (GbifResponseImportView) activePart.showView(GbifResponseImportView.ID);getWorkbench().getActiveWorkbenchWindow().getActivePage()
 121                              // .showView(GbifResponseImportView.ID, "query_"+query.toString().replaceAll(",", ""),IWorkbenchPage.VIEW_ACTIVATE);
 122
 123                     } catch (PartInitException e) {
 124                         // TODO Auto-generated catch block
 125                         e.printStackTrace();
 126                     }
 127
 128                 }
 129
 130
 131             } catch (IOException e) {
 132                 // TODO Auto-generated catch block
 133                 e.printStackTrace();
 134             }
 135            // CdmStore.getImportManager().run(configurator);
 136         }
 137 //        try {
 138 //            switch (providerSelectionPage.getQueryType()) {
 139 //            case BIOCASE:
 140 //                SpecimenImportView specimenImportView = (SpecimenImportView) TaxeditorEditorPlugin.getDefault().getWorkbench().getActiveWorkbenchWindow().getActivePage()
 141 //                        .showView(SpecimenImportView.ID, "query_"+query.toString().replaceAll(",", ""),IWorkbenchPage.VIEW_ACTIVATE);
 142 //                specimenImportView.setEndpoint(providerSelectionPage.getEndPoint());
 143 //                dataImportView = specimenImportView;
 144 //                break;
 145 //            case GBIF:
 146 //                dataImportView = (GbifResponseImportView) TaxeditorEditorPlugin.getDefault().getWorkbench().getActiveWorkbenchWindow().getActivePage()
 147 //                .showView(GbifResponseImportView.ID, "query_"+query.toString().replaceAll(",", ""),IWorkbenchPage.VIEW_ACTIVATE);
 148 //                break;
 149 //            }
 150 //        } catch ( PartInitException e ) {
 151 //            logger.error("Could not open import view for query: " + query.toString(), e);
 152 //        }
 153 //        if(dataImportView!=null){
 154 //            dataImportView.setQuery(query);
 155 ////            dataImportView.query();
 156 ////            Display.getDefault().asyncExec(new Runnable() {
 157 ////
 158 ////                @Override
 159 ////                public void run() {
 160 ////                    CdmStore.getContextManager().notifyContextRefresh();
 161 ////                }
 162 ////            });
 163             Job queryJob = new QueryJob("Query specimen provider", dataImportView);
 164             queryJob.schedule();
 165
 166         return true;
 167     }
 168
 169     /* (non-Javadoc)
 170      * @see org.eclipse.jface.wizard.Wizard#addPages()
 171      */
 172     @Override
 173     public void addPages() {
 174         addPage(providerSelectionPage);
 175         addPage(searchPage);
 176     }
 177
 178     /* (non-Javadoc)
 179      * @see org.eclipse.ui.IWorkbenchWizard#init(org.eclipse.ui.IWorkbench, org.eclipse.jface.viewers.IStructuredSelection)
 180      */
 181     @Override
 182     public void init(IWorkbench workbench, IStructuredSelection selection) {
 183         providerSelectionPage = new SpecimenProviderSelectionWizardPage("Select specimen provider");
 184         searchPage = new SpecimenSearchWizardPage("Specimen Search");
 185     }
 186
 187     private class QueryJob extends Job{
 188
 189         private final DataImportView<?> view;
 190
 191         /**
 192          * @param name
 193          */
 194         public QueryJob(String name, DataImportView<?> view) {
 195             super(name);
 196             this.view = view;
 197         }
 198
 199         /* (non-Javadoc)
 200          * @see org.eclipse.core.runtime.jobs.Job#run(org.eclipse.core.runtime.IProgressMonitor)
 201          */
 202         @Override
 203         protected IStatus run(IProgressMonitor monitor) {
 204             view.getConversationHolder().bind();
 205             view.query();
 206             Display.getDefault().asyncExec(new Runnable() {
 207
 208                 @Override
 209                 public void run() {
 210                     CdmStore.getContextManager().notifyContextRefresh();
 211                 }
 212             });
 213             return Status.OK_STATUS;
 214         }
 215
 216     }
 217 }