3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.editor
.view
.dataimport
.transientServices
;
12 import java
.io
.IOException
;
13 import java
.util
.Collection
;
14 import java
.util
.EnumSet
;
15 import java
.util
.List
;
18 import java
.util
.UUID
;
20 import org
.apache
.lucene
.index
.CorruptIndexException
;
21 import org
.apache
.lucene
.queryParser
.ParseException
;
22 import org
.hibernate
.LockOptions
;
23 import org
.hibernate
.Session
;
24 import org
.hibernate
.criterion
.Criterion
;
25 import org
.hibernate
.envers
.query
.criteria
.AuditCriterion
;
27 import eu
.etaxonomy
.cdm
.api
.service
.DeleteResult
;
28 import eu
.etaxonomy
.cdm
.api
.service
.ITaxonService
;
29 import eu
.etaxonomy
.cdm
.api
.service
.TaxaAndNamesSearchMode
;
30 import eu
.etaxonomy
.cdm
.api
.service
.UpdateResult
;
31 import eu
.etaxonomy
.cdm
.api
.service
.config
.DeleteConfiguratorBase
;
32 import eu
.etaxonomy
.cdm
.api
.service
.config
.IFindTaxaAndNamesConfigurator
;
33 import eu
.etaxonomy
.cdm
.api
.service
.config
.IIdentifiableEntityServiceConfigurator
;
34 import eu
.etaxonomy
.cdm
.api
.service
.config
.IncludedTaxonConfiguration
;
35 import eu
.etaxonomy
.cdm
.api
.service
.config
.MatchingTaxonConfigurator
;
36 import eu
.etaxonomy
.cdm
.api
.service
.config
.SynonymDeletionConfigurator
;
37 import eu
.etaxonomy
.cdm
.api
.service
.config
.TaxonDeletionConfigurator
;
38 import eu
.etaxonomy
.cdm
.api
.service
.dto
.FindByIdentifierDTO
;
39 import eu
.etaxonomy
.cdm
.api
.service
.dto
.IncludedTaxaDTO
;
40 import eu
.etaxonomy
.cdm
.api
.service
.exception
.DataChangeNoRollbackException
;
41 import eu
.etaxonomy
.cdm
.api
.service
.exception
.HomotypicalGroupChangeException
;
42 import eu
.etaxonomy
.cdm
.api
.service
.pager
.Pager
;
43 import eu
.etaxonomy
.cdm
.api
.service
.search
.LuceneMultiSearchException
;
44 import eu
.etaxonomy
.cdm
.api
.service
.search
.SearchResult
;
45 import eu
.etaxonomy
.cdm
.api
.service
.util
.TaxonRelationshipEdge
;
46 import eu
.etaxonomy
.cdm
.common
.monitor
.IProgressMonitor
;
47 import eu
.etaxonomy
.cdm
.model
.common
.Annotation
;
48 import eu
.etaxonomy
.cdm
.model
.common
.DefinedTerm
;
49 import eu
.etaxonomy
.cdm
.model
.common
.ISourceable
;
50 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableEntity
;
51 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableSource
;
52 import eu
.etaxonomy
.cdm
.model
.common
.LSID
;
53 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
54 import eu
.etaxonomy
.cdm
.model
.common
.Marker
;
55 import eu
.etaxonomy
.cdm
.model
.common
.MarkerType
;
56 import eu
.etaxonomy
.cdm
.model
.common
.OrderedTermVocabulary
;
57 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
;
58 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
.Direction
;
59 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionElementBase
;
60 import eu
.etaxonomy
.cdm
.model
.description
.Feature
;
61 import eu
.etaxonomy
.cdm
.model
.description
.PresenceAbsenceTerm
;
62 import eu
.etaxonomy
.cdm
.model
.location
.NamedArea
;
63 import eu
.etaxonomy
.cdm
.model
.media
.Media
;
64 import eu
.etaxonomy
.cdm
.model
.media
.MediaRepresentation
;
65 import eu
.etaxonomy
.cdm
.model
.media
.Rights
;
66 import eu
.etaxonomy
.cdm
.model
.name
.HomotypicalGroup
;
67 import eu
.etaxonomy
.cdm
.model
.name
.Rank
;
68 import eu
.etaxonomy
.cdm
.model
.name
.TaxonNameBase
;
69 import eu
.etaxonomy
.cdm
.model
.reference
.Reference
;
70 import eu
.etaxonomy
.cdm
.model
.taxon
.Classification
;
71 import eu
.etaxonomy
.cdm
.model
.taxon
.Synonym
;
72 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationship
;
73 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationshipType
;
74 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
75 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonBase
;
76 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonNode
;
77 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationship
;
78 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationshipType
;
79 import eu
.etaxonomy
.cdm
.model
.view
.AuditEvent
;
80 import eu
.etaxonomy
.cdm
.model
.view
.AuditEventRecord
;
81 import eu
.etaxonomy
.cdm
.persistence
.dao
.common
.AuditEventSort
;
82 import eu
.etaxonomy
.cdm
.persistence
.dto
.MergeResult
;
83 import eu
.etaxonomy
.cdm
.persistence
.dto
.UuidAndTitleCache
;
84 import eu
.etaxonomy
.cdm
.persistence
.fetch
.CdmFetch
;
85 import eu
.etaxonomy
.cdm
.persistence
.query
.Grouping
;
86 import eu
.etaxonomy
.cdm
.persistence
.query
.MatchMode
;
87 import eu
.etaxonomy
.cdm
.persistence
.query
.OrderHint
;
88 import eu
.etaxonomy
.cdm
.strategy
.cache
.common
.IIdentifiableEntityCacheStrategy
;
89 import eu
.etaxonomy
.cdm
.strategy
.match
.IMatchStrategy
;
90 import eu
.etaxonomy
.cdm
.strategy
.merge
.IMergeStrategy
;
97 public class TransientTaxonService
implements ITaxonService
{
99 private final ITaxonService defaultService
;
102 * @param defaultTaxonService
104 public TransientTaxonService(ITaxonService defaultTaxonService
) {
105 this.defaultService
= defaultTaxonService
;
113 * @param propertyPaths
115 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
118 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(TaxonBase t
, Integer pageSize
, Integer pageNumber
, AuditEventSort sort
, List
<String
> propertyPaths
) {
119 return defaultService
.pageAuditEvents(t
, pageSize
, pageNumber
, sort
, propertyPaths
);
123 * @param annotatedObj
128 * @param propertyPaths
130 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
133 public Pager
<Annotation
> getAnnotations(TaxonBase annotatedObj
, MarkerType status
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
134 return defaultService
.getAnnotations(annotatedObj
, status
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
139 * @see eu.etaxonomy.cdm.api.service.IService#clear()
142 public void clear() {
143 defaultService
.clear();
149 * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
152 public void lock(TaxonBase t
, LockOptions lockOptions
) {
153 defaultService
.lock(t
, lockOptions
);
159 * @param propertyPaths
160 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
163 public void refresh(TaxonBase t
, LockOptions lockOptions
, List
<String
> propertyPaths
) {
164 defaultService
.refresh(t
, lockOptions
, propertyPaths
);
169 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
172 public void updateTitleCache() {
173 defaultService
.updateTitleCache();
179 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
182 public AuditEventRecord
<TaxonBase
> getNextAuditEvent(TaxonBase t
) {
183 return defaultService
.getNextAuditEvent(t
);
187 * @param annotatableEntity
192 * @param propertyPaths
194 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
197 public Pager
<Marker
> getMarkers(TaxonBase annotatableEntity
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
198 return defaultService
.getMarkers(annotatableEntity
, technical
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
204 * @param cacheStrategy
206 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
209 public void updateTitleCache(Class
<?
extends TaxonBase
> clazz
, Integer stepSize
, IIdentifiableEntityCacheStrategy
<TaxonBase
> cacheStrategy
, IProgressMonitor monitor
) {
210 defaultService
.updateTitleCache(clazz
, stepSize
, cacheStrategy
, monitor
);
216 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
219 public AuditEventRecord
<TaxonBase
> getPreviousAuditEvent(TaxonBase t
) {
220 return defaultService
.getPreviousAuditEvent(t
);
226 * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
229 public int count(Class
<?
extends TaxonBase
> clazz
) {
230 return defaultService
.count(clazz
);
241 * @param propertyPaths
243 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
246 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(Class
<?
extends TaxonBase
> clazz
, AuditEvent from
, AuditEvent to
, List
<AuditCriterion
> criteria
, Integer pageSize
, Integer pageValue
, AuditEventSort sort
, List
<String
> propertyPaths
) {
247 return defaultService
.pageAuditEvents(clazz
, from
, to
, criteria
, pageSize
, pageValue
, sort
, propertyPaths
);
253 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
256 public TaxonBase
find(LSID lsid
) {
257 return defaultService
.find(lsid
);
261 * @param persistentObject
263 * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
266 public DeleteResult
delete(TaxonBase persistentObject
) {
267 return defaultService
.delete(persistentObject
);
275 * @param propertyPaths
277 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
280 public List
<Object
[]> groupMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
281 return defaultService
.groupMarkers(clazz
, technical
, pageSize
, pageNumber
, propertyPaths
);
287 * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
290 public boolean exists(UUID uuid
) {
291 return defaultService
.exists(uuid
);
299 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
302 public TaxonBase
replace(TaxonBase x
, TaxonBase y
) {
303 return defaultService
.replace(x
, y
);
309 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
312 public List
<TaxonBase
> find(Set
<UUID
> uuidSet
) {
313 return defaultService
.find(uuidSet
);
320 * @param propertyPaths
322 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
325 public Pager
<IdentifiableSource
> getSources(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
326 return defaultService
.getSources(t
, pageSize
, pageNumber
, propertyPaths
);
332 * @param onlyWithChildren
335 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.reference.Reference, eu.etaxonomy.cdm.persistence.fetch.CdmFetch, boolean)
339 public List
<Taxon
> getRootTaxa(Reference sec
, CdmFetch cdmFetch
, boolean onlyWithChildren
) {
340 return defaultService
.getRootTaxa(sec
, cdmFetch
, onlyWithChildren
);
346 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
349 public TaxonBase
find(UUID uuid
) {
350 return defaultService
.find(uuid
);
356 * @param onlyWithChildren
357 * @param withMisapplications
358 * @param propertyPaths
361 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.name.Rank, eu.etaxonomy.cdm.model.reference.Reference, boolean, boolean, java.util.List)
365 public List
<Taxon
> getRootTaxa(Rank rank
, Reference sec
, boolean onlyWithChildren
, boolean withMisapplications
, List
<String
> propertyPaths
) {
366 return defaultService
.getRootTaxa(rank
, sec
, onlyWithChildren
, withMisapplications
, propertyPaths
);
372 * @see eu.etaxonomy.cdm.api.service.IService#find(int)
375 public TaxonBase
find(int id
) {
376 return defaultService
.find(id
);
383 * @param propertyPaths
385 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
388 public Pager
<Rights
> getRights(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
389 return defaultService
.getRights(t
, pageSize
, pageNumber
, propertyPaths
);
396 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
399 public int countMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
) {
400 return defaultService
.countMarkers(clazz
, technical
);
406 * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
409 public List
<TaxonBase
> findById(Set
<Integer
> idSet
) {
410 return defaultService
.findById(idSet
);
418 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
421 public ISourceable
getSourcedObjectByIdInSource(Class clazz
, String idInSource
, String idNamespace
) {
422 return defaultService
.getSourcedObjectByIdInSource(clazz
, idInSource
, idNamespace
);
427 * @see eu.etaxonomy.cdm.api.service.IService#getSession()
430 public Session
getSession() {
431 return defaultService
.getSession();
436 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
439 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCache() {
440 return defaultService
.getUuidAndTitleCache();
448 * @param propertyPaths
450 * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
453 public List
<Object
[]> group(Class
<?
extends TaxonBase
> clazz
, Integer limit
, Integer start
, List
<Grouping
> groups
, List
<String
> propertyPaths
) {
454 return defaultService
.group(clazz
, limit
, start
, groups
, propertyPaths
);
461 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllRelationships(int, int)
464 public List
<RelationshipBase
> getAllRelationships(int limit
, int start
) {
465 return defaultService
.getAllRelationships(limit
, start
);
476 * @param propertyPaths
478 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
481 public Pager
<TaxonBase
> findByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
482 return defaultService
.findByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
488 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getTaxonRelationshipTypeVocabulary()
492 public OrderedTermVocabulary
<TaxonRelationshipType
> getTaxonRelationshipTypeVocabulary() {
493 return defaultService
.getTaxonRelationshipTypeVocabulary();
500 * @see eu.etaxonomy.cdm.api.service.ITaxonService#searchTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)
503 public List
<TaxonBase
> searchTaxaByName(String name
, Reference sec
) {
504 return defaultService
.searchTaxaByName(name
, sec
);
512 public UpdateResult
swapSynonymAndAcceptedTaxon(Synonym arg0
, Taxon arg1
) {
513 return defaultService
.swapSynonymAndAcceptedTaxon(arg0
, arg1
);
522 * @param propertyPaths
524 * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
527 public <S
extends TaxonBase
> List
<S
> list(Class
<S
> type
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
528 return defaultService
.list(type
, limit
, start
, orderHints
, propertyPaths
);
532 * @param configurator
534 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
537 public Pager
<TaxonBase
> findByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
538 return defaultService
.findByTitle(configurator
);
543 * @param acceptedTaxon
544 * @param deleteSynonym
545 * @param copyCitationInfo
547 * @param microCitation
549 * @throws HomotypicalGroupChangeException
550 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
553 public Taxon
changeSynonymToAcceptedTaxon(Synonym synonym
, Taxon acceptedTaxon
, boolean deleteSynonym
, boolean copyCitationInfo
, Reference citation
, String microCitation
) throws HomotypicalGroupChangeException
{
554 return defaultService
.changeSynonymToAcceptedTaxon(synonym
, acceptedTaxon
, deleteSynonym
, copyCitationInfo
, citation
, microCitation
);
563 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
566 public Integer
countByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
) {
567 return defaultService
.countByTitle(clazz
, queryString
, matchmode
, criteria
);
573 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
576 public TaxonBase
load(UUID uuid
) {
577 return defaultService
.load(uuid
);
582 * @param propertyPaths
584 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
587 public TaxonBase
load(UUID uuid
, List
<String
> propertyPaths
) {
588 return defaultService
.load(uuid
, propertyPaths
);
592 * @param configurator
594 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
597 public Integer
countByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
598 return defaultService
.countByTitle(configurator
);
602 * @param transientObject
604 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
607 public TaxonBase
merge(TaxonBase transientObject
) {
608 return defaultService
.merge(transientObject
);
619 * @param propertyPaths
621 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
624 public List
<TaxonBase
> listByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
625 return defaultService
.listByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
633 * @param propertyPaths
635 * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
638 public <S
extends TaxonBase
> Pager
<S
> page(Class
<S
> type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
639 return defaultService
.page(type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
643 * @param persistentObject
645 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
648 public UUID
refresh(TaxonBase persistentObject
) {
649 return defaultService
.refresh(persistentObject
);
655 * @param taxonRelationshipType
657 * @param microReference
659 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToRelatedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
662 public Taxon
changeSynonymToRelatedTaxon(Synonym synonym
, Taxon toTaxon
, TaxonRelationshipType taxonRelationshipType
, Reference reference
, String microReference
) {
663 return defaultService
.changeSynonymToRelatedTaxon(synonym
, toTaxon
, taxonRelationshipType
, reference
, microReference
);
674 * @param propertyPaths
676 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
679 public List
<TaxonBase
> listByReferenceTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
680 return defaultService
.listByReferenceTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
688 * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
691 public List
<TaxonBase
> rows(String tableName
, int limit
, int start
) {
692 return defaultService
.rows(tableName
, limit
, start
);
696 * @param newInstances
698 * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
701 public Map
<UUID
, TaxonBase
> save(Collection
<TaxonBase
> newInstances
) {
709 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
712 public long deleteSynonymRelationships(Synonym syn
, Taxon taxon
) {
713 return defaultService
.deleteSynonymRelationships(syn
, taxon
);
719 * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
722 public TaxonBase
save(TaxonBase newInstance
) {
727 * @param transientObject
729 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
732 public UUID
saveOrUpdate(TaxonBase transientObject
) {
738 * @param newHomotypicalGroup
740 * @param removeFromOtherTaxa
741 * @param setBasionymRelationIfApplicable
742 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeHomotypicalGroupOfSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.name.HomotypicalGroup, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean)
745 public void changeHomotypicalGroupOfSynonym(Synonym synonym
, HomotypicalGroup newHomotypicalGroup
, Taxon targetTaxon
, boolean removeFromOtherTaxa
, boolean setBasionymRelationIfApplicable
) {
746 defaultService
.changeHomotypicalGroupOfSynonym(synonym
, newHomotypicalGroup
, targetTaxon
, removeFromOtherTaxa
, setBasionymRelationIfApplicable
);
750 * @param transientObjects
752 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
755 public Map
<UUID
, TaxonBase
> saveOrUpdate(Collection
<TaxonBase
> transientObjects
) {
760 * @param transientObject
762 * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
765 public UUID
update(TaxonBase transientObject
) {
766 return defaultService
.update(transientObject
);
771 * @param includeProperties
775 * @param propertyPaths
777 * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
780 public List
<TaxonBase
> list(TaxonBase example
, Set
<String
> includeProperties
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
781 return defaultService
.list(example
, includeProperties
, limit
, start
, orderHints
, propertyPaths
);
785 * @param oldSynonymRelation
787 * @param moveHomotypicGroup
788 * @param newSynonymRelationshipType
789 * @param newReference
790 * @param newReferenceDetail
791 * @param keepReference
793 * @throws HomotypicalGroupChangeException
794 * @see eu.etaxonomy.cdm.api.service.ITaxonService#moveSynonymToAnotherTaxon(eu.etaxonomy.cdm.model.taxon.SynonymRelationship, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String, boolean)
797 public SynonymRelationship
moveSynonymToAnotherTaxon(SynonymRelationship oldSynonymRelation
, Taxon newTaxon
, boolean moveHomotypicGroup
, SynonymRelationshipType newSynonymRelationshipType
, Reference newReference
, String newReferenceDetail
, boolean keepReference
) throws HomotypicalGroupChangeException
{
798 return defaultService
.moveSynonymToAnotherTaxon(oldSynonymRelation
, newTaxon
, moveHomotypicGroup
, newSynonymRelationshipType
, newReference
, newReferenceDetail
, keepReference
);
803 * @param matchStrategy
804 * @param mergeStrategy
806 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
809 public int deduplicate(Class
<?
extends TaxonBase
> clazz
, IMatchStrategy matchStrategy
, IMergeStrategy mergeStrategy
) {
810 return defaultService
.deduplicate(clazz
, matchStrategy
, mergeStrategy
);
821 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
824 public Pager
<TaxonBase
> findTitleCache(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, MatchMode matchMode
) {
825 return defaultService
.findTitleCache(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, matchMode
);
834 * @param propertyPaths
836 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
839 public List
<TaxonRelationship
> listToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
840 return defaultService
.listToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
849 * @param propertyPaths
851 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
854 public Pager
<TaxonRelationship
> pageToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
855 return defaultService
.pageToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
864 * @param propertyPaths
866 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
869 public List
<TaxonRelationship
> listFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
870 return defaultService
.listFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
879 * @param propertyPaths
881 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
884 public Pager
<TaxonRelationship
> pageFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
885 return defaultService
.pageFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
890 * @param includeRelationships
894 * @param propertyPaths
896 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listRelatedTaxa(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List)
899 public Set
<Taxon
> listRelatedTaxa(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Integer maxDepth
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
900 return defaultService
.listRelatedTaxa(taxon
, includeRelationships
, maxDepth
, limit
, start
, propertyPaths
);
907 * @param propertyPaths
909 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listClassifications(eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
912 public List
<Classification
> listClassifications(TaxonBase taxonBase
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
913 return defaultService
.listClassifications(taxonBase
, limit
, start
, propertyPaths
);
922 * @param propertyPaths
924 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
927 public Pager
<SynonymRelationship
> getSynonyms(Synonym synonym
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
928 return defaultService
.getSynonyms(synonym
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
937 * @param propertyPaths
939 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
942 public Pager
<SynonymRelationship
> getSynonyms(Taxon taxon
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
943 return defaultService
.getSynonyms(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
948 * @param propertyPaths
950 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHomotypicSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
953 public List
<Synonym
> getHomotypicSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
954 return defaultService
.getHomotypicSynonymsByHomotypicGroup(taxon
, propertyPaths
);
959 * @param propertyPaths
961 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHeterotypicSynonymyGroups(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
964 public List
<List
<Synonym
>> getHeterotypicSynonymyGroups(Taxon taxon
, List
<String
> propertyPaths
) {
965 return defaultService
.getHeterotypicSynonymyGroups(taxon
, propertyPaths
);
974 * @param propertyPaths
976 * @see eu.etaxonomy.cdm.api.service.ITaxonService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
979 public Pager
<TaxonBase
> search(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
980 return defaultService
.search(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
986 * @param infragenericEpithet
987 * @param specificEpithet
988 * @param infraspecificEpithet
993 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
996 public Pager
<TaxonBase
> findTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
997 return defaultService
.findTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
1003 * @param infragenericEpithet
1004 * @param specificEpithet
1005 * @param infraspecificEpithet
1010 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
1013 public List
<TaxonBase
> listTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
1014 return defaultService
.listTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
1018 * @param configurator
1020 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNames(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1023 public Pager
<IdentifiableEntity
> findTaxaAndNames(IFindTaxaAndNamesConfigurator configurator
) {
1024 return defaultService
.findTaxaAndNames(configurator
);
1028 * @param queryString
1029 * @param classification
1031 * @param highlightFragments
1035 * @param propertyPaths
1037 * @throws CorruptIndexException
1038 * @throws IOException
1039 * @throws ParseException
1040 * @throws LuceneMultiSearchException
1042 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByEverythingFullText(java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1046 public Pager
<SearchResult
<TaxonBase
>> findByEverythingFullText(String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1047 return defaultService
.findByEverythingFullText(queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1052 * @param queryString
1053 * @param classification
1055 * @param highlightFragments
1059 * @param propertyPaths
1061 * @throws CorruptIndexException
1062 * @throws IOException
1063 * @throws ParseException
1064 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1067 public Pager
<SearchResult
<TaxonBase
>> findByFullText(Class
<?
extends TaxonBase
> clazz
, String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1068 return defaultService
.findByFullText(clazz
, queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1073 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDistribution(java.util.List, java.util.List, eu.etaxonomy.cdm.model.taxon.Classification, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1076 public Pager
<SearchResult
<TaxonBase
>> findByDistribution(List
<NamedArea
> areaFilter
,
1077 List
<PresenceAbsenceTerm
> statusFilter
, Classification classification
, Integer pageSize
,
1078 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws IOException
,
1080 return defaultService
.findByDistribution(areaFilter
, statusFilter
, classification
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1085 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesByFullText(java.util.EnumSet, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.Set, java.util.Set, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1088 public Pager
<SearchResult
<TaxonBase
>> findTaxaAndNamesByFullText(EnumSet
<TaxaAndNamesSearchMode
> searchModes
,
1089 String queryString
, Classification classification
, Set
<NamedArea
> namedAreas
,
1090 Set
<PresenceAbsenceTerm
> distributionStatus
, List
<Language
> languages
, boolean highlightFragments
,
1091 Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
)
1092 throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1093 return defaultService
.findTaxaAndNamesByFullText(searchModes
, queryString
, classification
, namedAreas
, distributionStatus
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1098 * @param queryString
1099 * @param classification
1102 * @param highlightFragments
1106 * @param propertyPaths
1108 * @throws CorruptIndexException
1109 * @throws IOException
1110 * @throws ParseException
1111 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDescriptionElementFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1114 public Pager
<SearchResult
<TaxonBase
>> findByDescriptionElementFullText(Class
<?
extends DescriptionElementBase
> clazz
, String queryString
, Classification classification
, List
<Feature
> features
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1115 return defaultService
.findByDescriptionElementFullText(clazz
, queryString
, classification
, features
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1122 * @param widthOrDuration
1126 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllMedia(eu.etaxonomy.cdm.model.taxon.Taxon, int, int, int, java.lang.String[])
1130 public List
<MediaRepresentation
> getAllMedia(Taxon taxon
, int size
, int height
, int widthOrDuration
, String
[] mimeTypes
) {
1131 return defaultService
.getAllMedia(taxon
, size
, height
, widthOrDuration
, mimeTypes
);
1136 * @param includeRelationships
1137 * @param limitToGalleries
1138 * @param propertyPath
1141 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxonDescriptionMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, boolean, java.util.List)
1145 public List
<Media
> listTaxonDescriptionMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, boolean limitToGalleries
, List
<String
> propertyPath
) {
1146 return defaultService
.listTaxonDescriptionMedia(taxon
, includeRelationships
, limitToGalleries
, propertyPath
);
1151 * @param includeRelationships
1152 * @param limitToGalleries
1153 * @param includeTaxonDescriptions
1154 * @param includeOccurrences
1155 * @param includeTaxonNameDescriptions
1156 * @param propertyPath
1158 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.util.List)
1161 public List
<Media
> listMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Boolean limitToGalleries
, Boolean includeTaxonDescriptions
, Boolean includeOccurrences
, Boolean includeTaxonNameDescriptions
, List
<String
> propertyPath
) {
1162 return defaultService
.listMedia(taxon
, includeRelationships
, limitToGalleries
, includeTaxonDescriptions
, includeOccurrences
, includeTaxonNameDescriptions
, propertyPath
);
1168 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByID(java.util.Set)
1171 public List
<TaxonBase
> findTaxaByID(Set
<Integer
> listOfIDs
) {
1172 return defaultService
.findTaxaByID(listOfIDs
);
1177 * @param propertyPaths
1179 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxonByUuid(java.util.UUID, java.util.List)
1182 public TaxonBase
findTaxonByUuid(UUID uuid
, List
<String
> propertyPaths
) {
1183 return defaultService
.findTaxonByUuid(uuid
, propertyPaths
);
1188 * @see eu.etaxonomy.cdm.api.service.ITaxonService#countAllRelationships()
1191 public int countAllRelationships() {
1192 return defaultService
.countAllRelationships();
1196 * @param propertyPath
1198 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNames(java.util.List)
1201 public List
<TaxonNameBase
> findIdenticalTaxonNames(List
<String
> propertyPath
) {
1202 return defaultService
.findIdenticalTaxonNames(propertyPath
);
1206 * @param propertyPath
1208 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNameIds(java.util.List)
1211 public List
<TaxonNameBase
> findIdenticalTaxonNameIds(List
<String
> propertyPath
) {
1212 return defaultService
.findIdenticalTaxonNameIds(propertyPath
);
1218 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getPhylumName(eu.etaxonomy.cdm.model.name.TaxonNameBase)
1221 public String
getPhylumName(TaxonNameBase name
) {
1222 return defaultService
.getPhylumName(name
);
1228 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym)
1231 public long deleteSynonymRelationships(Synonym syn
) {
1232 return defaultService
.deleteSynonymRelationships(syn
);
1241 * @param propertyPaths
1244 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listSynonymRelationships(eu.etaxonomy.cdm.model.taxon.TaxonBase, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List, eu.etaxonomy.cdm.model.common.RelationshipBase.Direction)
1247 public List
<SynonymRelationship
> listSynonymRelationships(TaxonBase taxonBase
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
, Direction direction
) {
1248 return defaultService
.listSynonymRelationships(taxonBase
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
, direction
);
1254 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(java.lang.String)
1257 public Taxon
findBestMatchingTaxon(String taxonName
) {
1258 return defaultService
.findBestMatchingTaxon(taxonName
);
1264 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
1267 public Taxon
findBestMatchingTaxon(MatchingTaxonConfigurator config
) {
1268 return defaultService
.findBestMatchingTaxon(config
);
1274 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingSynonym(java.lang.String)
1277 public Synonym
findBestMatchingSynonym(String taxonName
) {
1278 return defaultService
.findBestMatchingSynonym(taxonName
);
1283 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheTaxon()
1286 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheTaxon() {
1287 return defaultService
.getUuidAndTitleCacheTaxon();
1292 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheSynonym()
1295 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheSynonym() {
1296 return defaultService
.getUuidAndTitleCacheSynonym();
1300 * @param configurator
1302 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesForEditor(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1305 public List
<UuidAndTitleCache
<IdentifiableEntity
>> findTaxaAndNamesForEditor(IFindTaxaAndNamesConfigurator configurator
) {
1306 return defaultService
.findTaxaAndNamesForEditor(configurator
);
1313 * @param doWithMisappliedNames
1315 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, boolean)
1318 public List
<Synonym
> createInferredSynonyms(Taxon taxon
, Classification tree
, SynonymRelationshipType type
, boolean doWithMisappliedNames
) {
1319 return defaultService
.createInferredSynonyms(taxon
, tree
, type
, doWithMisappliedNames
);
1325 * @param doWithMisappliedNames
1327 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createAllInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, boolean)
1330 public List
<Synonym
> createAllInferredSynonyms(Taxon taxon
, Classification tree
, boolean doWithMisappliedNames
) {
1331 return defaultService
.createAllInferredSynonyms(taxon
, tree
, doWithMisappliedNames
);
1335 public DeleteResult
deleteSynonym(Synonym arg0
, SynonymDeletionConfigurator arg1
) {
1336 return defaultService
.deleteSynonym(arg0
, arg1
);
1340 public DeleteResult
deleteSynonym(Synonym arg0
, Taxon arg1
, SynonymDeletionConfigurator arg2
) {
1341 return defaultService
.deleteSynonym(arg0
, arg1
, arg2
);
1345 public List
<List
<Synonym
>> getSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
1346 return defaultService
.getSynonymsByHomotypicGroup(taxon
, propertyPaths
);
1350 public Synonym
changeRelatedTaxonToSynonym(Taxon fromTaxon
, Taxon toTaxon
,
1351 TaxonRelationshipType oldRelationshipType
,
1352 SynonymRelationshipType synonymRelationshipType
)
1353 throws DataChangeNoRollbackException
{
1355 return defaultService
.changeRelatedTaxonToSynonym(fromTaxon
, toTaxon
, oldRelationshipType
, synonymRelationshipType
);
1359 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1362 public Pager
<Taxon
> pageAcceptedTaxaFor(UUID synonymUuid
, UUID classificationUuid
, Integer pageSize
,
1363 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
1364 return defaultService
.pageAcceptedTaxaFor(synonymUuid
, classificationUuid
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1368 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1371 public List
<Taxon
> listAcceptedTaxaFor(UUID synonymUuid
, UUID classificationUuid
, Integer pageSize
,
1372 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
1373 return defaultService
.listAcceptedTaxaFor(synonymUuid
, classificationUuid
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1377 public DeleteResult
isDeletable(TaxonBase object
,
1378 DeleteConfiguratorBase config
) {
1379 // TODO Auto-generated method stub
1384 public IncludedTaxaDTO
listIncludedTaxa(UUID taxonUuid
,
1385 IncludedTaxonConfiguration configuration
) {
1386 // TODO Auto-generated method stub
1391 public TaxonBase
findWithoutFlush(UUID uuid
) {
1392 return defaultService
.findWithoutFlush(uuid
);
1396 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
1399 public List
<TaxonBase
> findTaxaByName(MatchingTaxonConfigurator config
) {
1400 return defaultService
.findTaxaByName(config
);
1404 public <S
extends TaxonBase
> Pager
<FindByIdentifierDTO
<S
>> findByIdentifier(Class
<S
> clazz
, String identifier
, DefinedTerm identifierType
, MatchMode matchmode
, boolean includeEntity
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
){
1405 return defaultService
.findByIdentifier(clazz
, identifier
, identifierType
, matchmode
, includeEntity
, pageSize
, pageNumber
, propertyPaths
);
1409 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByIdentifier(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.common.DefinedTerm, eu.etaxonomy.cdm.model.taxon.TaxonNode, eu.etaxonomy.cdm.persistence.query.MatchMode, boolean, java.lang.Integer, java.lang.Integer, java.util.List)
1412 public <S
extends TaxonBase
> Pager
<FindByIdentifierDTO
<S
>> findByIdentifier(Class
<S
> clazz
, String identifier
,
1413 DefinedTerm identifierType
, TaxonNode subtreeFilter
, MatchMode matchmode
, boolean includeEntity
,
1414 Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
1415 return defaultService
.findByIdentifier(clazz
, identifier
, identifierType
, subtreeFilter
, matchmode
, includeEntity
, pageSize
, pageNumber
, propertyPaths
);
1421 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(java.util.UUID, java.util.UUID, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
1424 public DeleteResult
deleteSynonym(UUID synonymUuid
, UUID taxonUuid
, SynonymDeletionConfigurator config
) {
1425 return defaultService
.deleteSynonym(synonymUuid
, taxonUuid
, config
);
1434 public UpdateResult
swapSynonymAndAcceptedTaxon(UUID synonymUUid
, UUID acceptedTaxonUuid
) {
1435 return defaultService
.swapSynonymAndAcceptedTaxon(synonymUUid
, acceptedTaxonUuid
);
1439 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteTaxon(java.util.UUID, eu.etaxonomy.cdm.api.service.config.TaxonDeletionConfigurator, java.util.UUID)
1442 public DeleteResult
deleteTaxon(UUID taxonUuid
, TaxonDeletionConfigurator config
, UUID classificationUuid
) {
1443 return defaultService
.deleteTaxon(taxonUuid
, config
, classificationUuid
);
1448 public UpdateResult
moveFactualDateToAnotherTaxon(UUID arg0
, UUID arg1
) {
1449 return defaultService
.moveFactualDateToAnotherTaxon(arg0
, arg1
);
1457 public UpdateResult
moveSynonymToAnotherTaxon(
1458 SynonymRelationship oldSynonymRelation
, UUID newTaxonUUID
,
1459 boolean moveHomotypicGroup
,
1460 SynonymRelationshipType newSynonymRelationshipType
,
1461 Reference reference
, String referenceDetail
, boolean keepReference
)
1462 throws HomotypicalGroupChangeException
{
1464 return defaultService
.moveSynonymToAnotherTaxon(oldSynonymRelation
, newTaxonUUID
, moveHomotypicGroup
, newSynonymRelationshipType
, reference
, referenceDetail
, keepReference
);
1469 * @see eu.etaxonomy.cdm.api.service.IService#delete(java.util.UUID)
1472 public DeleteResult
delete(UUID uuid
) {
1473 return defaultService
.delete(uuid
);
1478 * @see eu.etaxonomy.cdm.api.service.IService#delete(java.util.Collection)
1481 public DeleteResult
delete(Collection
<UUID
> arg0
) {
1482 return defaultService
.delete(arg0
);
1486 * @see eu.etaxonomy.cdm.api.service.IService#merge(java.util.List)
1489 public List
<TaxonBase
> merge(List
<TaxonBase
> arg0
) {
1490 return defaultService
.merge(arg0
);
1494 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(java.util.UUID, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
1497 public DeleteResult
deleteSynonym(UUID arg0
, SynonymDeletionConfigurator arg1
) {
1498 return defaultService
.deleteSynonym(arg0
, arg1
);
1502 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToRelatedTaxon(java.util.UUID, java.util.UUID, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
1505 public UpdateResult
changeSynonymToRelatedTaxon(UUID arg0
, UUID arg1
, TaxonRelationshipType arg2
, Reference arg3
,
1507 return defaultService
.changeSynonymToRelatedTaxon(arg0
, arg1
, arg2
, arg3
, arg4
);
1511 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeRelatedTaxonToSynonym(java.util.UUID, java.util.UUID, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType)
1514 public UpdateResult
changeRelatedTaxonToSynonym(UUID arg0
, UUID arg1
, TaxonRelationshipType arg2
,
1515 SynonymRelationshipType arg3
) throws DataChangeNoRollbackException
{
1516 return defaultService
.changeRelatedTaxonToSynonym(arg0
, arg1
, arg2
, arg3
);
1521 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToAcceptedTaxon(java.util.UUID, java.util.UUID, java.util.UUID, boolean, boolean, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
1524 public UpdateResult
changeSynonymToAcceptedTaxon(UUID arg0
, UUID arg1
, UUID arg2
, boolean arg3
, boolean arg4
,
1525 Reference arg5
, String arg6
) throws HomotypicalGroupChangeException
{
1526 return defaultService
.changeSynonymToAcceptedTaxon(arg0
, arg1
, arg2
, arg3
, arg4
, arg5
, arg6
);
1530 * @see eu.etaxonomy.cdm.api.service.IService#merge(java.util.List, boolean)
1533 public List
<MergeResult
<TaxonBase
>> merge(List
<TaxonBase
> arg0
, boolean arg1
) {
1534 return defaultService
.merge(arg0
, arg1
);
1538 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase, boolean)
1541 public MergeResult
<TaxonBase
> merge(TaxonBase arg0
, boolean arg1
) {
1542 return defaultService
.merge(arg0
, arg1
);