65445fc57b90c4dc08ea76a465c5ffe9b96c54ca
[taxeditor.git] / eu.etaxonomy.taxeditor.test / src / test / java / eu / etaxonomy / taxeditor / session / CdmEntitySessionAwareTest.java
1 // $Id$
2 /**
3 * Copyright (C) 2014 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
6 *
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
9 */
10 package eu.etaxonomy.taxeditor.session;
11
12 import java.util.ArrayList;
13 import java.util.Iterator;
14 import java.util.List;
15 import java.util.Map;
16 import java.util.Set;
17 import java.util.UUID;
18
19 import org.apache.log4j.Logger;
20 import org.hibernate.collection.spi.PersistentCollection;
21 import org.junit.Assert;
22 import org.junit.BeforeClass;
23 import org.junit.Ignore;
24 import org.junit.Test;
25 import org.unitils.dbunit.annotation.DataSet;
26
27 import eu.etaxonomy.cdm.api.application.CdmApplicationState;
28 import eu.etaxonomy.cdm.api.service.ICommonService;
29 import eu.etaxonomy.cdm.api.service.IPolytomousKeyNodeService;
30 import eu.etaxonomy.cdm.api.service.IPolytomousKeyService;
31 import eu.etaxonomy.cdm.api.service.ITaxonService;
32 import eu.etaxonomy.cdm.api.service.ITermService;
33 import eu.etaxonomy.cdm.api.service.IUserService;
34 import eu.etaxonomy.cdm.api.service.IVocabularyService;
35 import eu.etaxonomy.cdm.model.agent.AgentBase;
36 import eu.etaxonomy.cdm.model.agent.Person;
37 import eu.etaxonomy.cdm.model.common.CdmBase;
38 import eu.etaxonomy.cdm.model.common.Credit;
39 import eu.etaxonomy.cdm.model.common.DefinedTermBase;
40 import eu.etaxonomy.cdm.model.common.Extension;
41 import eu.etaxonomy.cdm.model.common.IdentifiableSource;
42 import eu.etaxonomy.cdm.model.common.Language;
43 import eu.etaxonomy.cdm.model.common.LanguageString;
44 import eu.etaxonomy.cdm.model.common.TermType;
45 import eu.etaxonomy.cdm.model.common.TermVocabulary;
46 import eu.etaxonomy.cdm.model.description.KeyStatement;
47 import eu.etaxonomy.cdm.model.description.PolytomousKey;
48 import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
49 import eu.etaxonomy.cdm.model.media.Rights;
50 import eu.etaxonomy.cdm.model.taxon.Taxon;
51 import eu.etaxonomy.taxeditor.httpinvoker.RemotingSessionAwareTest;
52
53 /**
54 * @author cmathew
55 * @date 7 Oct 2014
56 *
57 */
58 @DataSet
59 public class CdmEntitySessionAwareTest extends RemotingSessionAwareTest {
60
61 private static final Logger logger = Logger.getLogger(CdmEntitySessionAwareTest.class);
62
63 UUID polytomousKeyUuid = UUID.fromString("0d53ba20-7de4-4baa-bd8a-401048447d66");
64 UUID subKeyUuid = UUID.fromString("9d8bf4f6-a70a-4b80-8556-2ccfb436ff01");
65 //UUID polytomousKeyUuid = UUID.fromString("bab66772-2c83-428a-bb6d-655d12ac6097");
66 UUID taxon1Uuid = UUID.fromString("2b336df7-29e8-4f79-985f-66502739d22f");
67 UUID personUuid = UUID.fromString("945d08f2-eb92-45b6-9252-6275ea6d338b");
68
69
70
71 IPolytomousKeyService polytomousKeyService = getRemoteApplicationController().getPolytomousKeyService();
72 IPolytomousKeyNodeService polytomousKeyNodeService = getRemoteApplicationController().getPolytomousKeyNodeService();
73 ICommonService commonService = getRemoteApplicationController().getCommonService();
74 ITaxonService taxonService = getRemoteApplicationController().getTaxonService();
75 IVocabularyService vocabularyService = getRemoteApplicationController().getVocabularyService();
76 ITermService termService = getRemoteApplicationController().getTermService();
77 IUserService userService = getRemoteApplicationController().getUserService();
78
79 //Language english = Language.getLanguageFromUuid(Language.uuidEnglish);
80
81
82
83 @BeforeClass
84 public static void initializePolytomousKeyTest() {
85 }
86
87
88 @Test
89 public void readAllPolytomousKeys() {
90 List<PolytomousKey> pKeys = polytomousKeyService.list(PolytomousKey.class, null, null, null, null);
91 Iterator<PolytomousKey> pKeysItr = pKeys.iterator();
92 Assert.assertEquals(pKeysItr.next().getUuid(),UUID.fromString("9d8bf4f6-a70a-4b80-8556-2ccfb436ff01"));
93 Assert.assertEquals(pKeysItr.next().getUuid(),UUID.fromString("0d53ba20-7de4-4baa-bd8a-401048447d66"));
94 }
95
96
97 @Test
98 //@DataSet("PolytomousKeyTest.readPolytmousKeyData.xml")
99 public void readPolytmousKeyData() {
100 PolytomousKey pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
101 Set<Taxon> taxonomicScope = pKey.getTaxonomicScope();
102 Iterator<Taxon> tsItr = taxonomicScope.iterator();
103 Taxon taxon = tsItr.next();
104
105 Assert.assertEquals("Achillea sec. Cyprus", taxon.getTitleCache());
106 Assert.assertEquals(tsItr.hasNext(), false);
107
108 List<Credit> credits = pKey.getCredits();
109 AgentBase agent = credits.get(0).getAgent();
110 Assert.assertEquals(agent.getId(),4809);
111 Assert.assertEquals(agent.getTitleCache(),"R. A. Graham");
112 Assert.assertEquals(credits.get(0).getText(),"Credits Text Test");
113
114 Set<Extension> exts = pKey.getExtensions();
115 Iterator<Extension> extItr = exts.iterator();
116 Extension ext = extItr.next();
117 Assert.assertEquals(ext.getValue(), "http://test.com");
118
119 Set<Rights> rights = pKey.getRights();
120 Iterator<Rights> rightsItr = rights.iterator();
121 Rights right = rightsItr.next();
122 Assert.assertEquals(right.getText(),"Rights Text Test");
123
124 Set<IdentifiableSource> sources = pKey.getSources();
125 Iterator<IdentifiableSource> sourcesItr = sources.iterator();
126 IdentifiableSource source = sourcesItr.next();
127 Assert.assertEquals(source.getId(), 23710);
128 source = sourcesItr.next();
129 Assert.assertEquals(source.getId(), 23711);
130
131 // TO DO : Added tests for Annotations , Markers
132 }
133
134
135
136 @Test
137 public void readPolytomousKeyDataFromNodes() {
138 PolytomousKey pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
139 PolytomousKeyNode rootNode = pKey.getRoot();
140
141
142 Assert.assertEquals(rootNode.getId(), 2750);
143
144 Assert.assertEquals(rootNode.getChildAt(0).getId(), 2751);
145 Assert.assertEquals(rootNode.getChildAt(0).getParent().getId(), rootNode.getId());
146 Assert.assertEquals(rootNode.getKey().getId(), pKey.getId());
147 Integer sortIndex = (Integer)getFieldValueViaReflection(rootNode.getChildAt(0), "sortIndex");
148 Assert.assertEquals(sortIndex, new Integer(0));
149 String statement = "Capitula without ligulate ray-florets; leaves entire or subentire";
150 Assert.assertEquals(rootNode.getChildAt(0).getStatement().getLabelText(Language.ENGLISH()), statement);
151
152 Assert.assertEquals(rootNode.getChildAt(1).getId(), 2753);
153 Assert.assertEquals(rootNode.getChildAt(1).getParent().getId(), rootNode.getId());
154 Assert.assertEquals(rootNode.getChildAt(1).getKey().getId(), pKey.getId());
155 sortIndex = (Integer)getFieldValueViaReflection(rootNode.getChildAt(1), "sortIndex");
156 Assert.assertEquals(sortIndex, new Integer(1));
157 statement = "Capitula with ligulate ray-florets; leaves pinnatisect";
158 Assert.assertEquals(rootNode.getChildAt(1).getStatement().getLabelText(Language.ENGLISH()), statement);
159
160 Assert.assertEquals(rootNode.getChildAt(1).getChildAt(0).getId(), 2754);
161 Assert.assertEquals(rootNode.getChildAt(1).getChildAt(0).getParent().getId(), rootNode.getChildAt(1).getId());
162 Assert.assertEquals(rootNode.getChildAt(1).getChildAt(0).getKey().getId(), pKey.getId());
163 sortIndex = (Integer)getFieldValueViaReflection(rootNode.getChildAt(1).getChildAt(0), "sortIndex");
164 Assert.assertEquals(sortIndex, new Integer(0));
165 statement = "Ray-florets yellow";
166 Assert.assertEquals(rootNode.getChildAt(1).getChildAt(0).getStatement().getLabelText(Language.ENGLISH()), statement);
167 Assert.assertEquals(rootNode.getChildAt(1).getChildAt(0).getChildAt(0).getTaxon().getTitleCache(), "Achillea arabica Kotschy sec. Cyprus");
168 }
169
170 @Test
171 public void addGreatGrandChildPolytomousKeyNode() {
172
173 PolytomousKey pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
174 PolytomousKeyNode rootChildNode = pKey.getRoot().getChildAt(0);
175 PolytomousKeyNode grandChildNode = PolytomousKeyNode.NewInstance();
176 rootChildNode.addChild(grandChildNode);
177
178 grandChildNode = polytomousKeyNodeService.merge(grandChildNode);
179
180 PolytomousKeyNode greatGrandChildNode = PolytomousKeyNode.NewInstance();
181 grandChildNode.addChild(greatGrandChildNode);
182
183 Assert.assertFalse(pKey.getRoot().getChildAt(0).getChildAt(0).getId() == 0);
184 }
185
186 @Test
187 public void savePolytomousKeyNodeData() {
188 PolytomousKey pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
189
190 PolytomousKeyNode pkeynode = pkey.getRoot();
191 String newQuestion = "New Question";
192 String newStatement = "New Statement";
193
194 Assert.assertEquals("Question 1",pkeynode.getQuestion().getLabel().get(Language.ENGLISH()).getText());
195 for(PolytomousKeyNode node : pkeynode.getChildren()) {
196
197 node.setQuestion(null);
198 node.setStatement(null);
199 }
200 //FIXME:Remoting Add tests for feature after fixing problem
201
202 //Feature feature = pkeynode.getFeature();
203 //Assert.assertEquals(feature.getTitleCache(),"Systematics");
204 //pkeynode.setFeature(null);
205
206 Assert.assertEquals(pkeynode.getChildAt(0).getModifyingText().get(Language.ENGLISH()).getText(),"Modifying Text 1a");
207 String modifyingText = "Modifying Text 1a updated";
208
209 //pkeynode.getChildAt(0).putModifyingText(Language.ENGLISH(), modifyingText);
210
211 Assert.assertEquals(pkeynode.getChildAt(0).getSubkey().getId(),751);
212 Assert.assertEquals("Asphodeline", pkeynode.getChildAt(0).getSubkey().getTitleCache());
213 Assert.assertNull(pkeynode.getChildAt(1).getTaxon());
214 Taxon taxon = CdmBase.deproxy(taxonService.find(taxon1Uuid),Taxon.class);
215 pkeynode.getChildAt(1).setTaxon(taxon);
216
217 polytomousKeyService.merge(pkey);
218
219 pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
220
221
222 pkeynode = pkey.getRoot();
223 for(PolytomousKeyNode node : pkeynode.getChildren()) {
224 Assert.assertNull(node.getQuestion());
225 node.setQuestion(KeyStatement.NewInstance(Language.ENGLISH(),newQuestion));
226 Assert.assertNull(node.getStatement());
227 node.setStatement(KeyStatement.NewInstance(Language.ENGLISH(),newStatement));
228 }
229
230 Assert.assertEquals(pkeynode.getChildAt(1).getTaxon(), taxon);
231
232 polytomousKeyService.merge(pkey);
233
234 pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
235
236 pkeynode = pkey.getRoot();
237 for(PolytomousKeyNode node : pkeynode.getChildren()) {
238 Assert.assertNotNull(node.getQuestion());
239 Map<Language, LanguageString> label = node.getQuestion().getLabel();
240 Assert.assertEquals(newQuestion, label.get(Language.ENGLISH()).getText());
241 Assert.assertNotNull(node.getStatement());
242 Assert.assertEquals(newStatement, node.getStatement().getLabel(Language.ENGLISH()).getText());
243 }
244 //Assert.assertEquals(pkeynode.getFeature().getId(), feature.getId());
245
246 }
247
248
249 @Test
250 public void savePolytomousKeyNodeDataWithSameSubKey() {
251
252 PolytomousKey pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
253
254
255 PolytomousKeyNode pkeynode = pkey.getRoot();
256
257 PolytomousKey subkey1 = CdmBase.deproxy(pkeynode.getChildAt(0).getSubkey(), PolytomousKey.class);
258 String subkey1title = subkey1.getTitleCache();
259 subkey1.setTitleCache(subkey1title + "test", true);
260
261
262 PolytomousKey subkey2 = CdmBase.deproxy(pkeynode.getChildAt(1).getChildAt(0).getSubkey(), PolytomousKey.class);
263 String subkey2title = subkey2.getTitleCache();
264 subkey2.setTitleCache(subkey2title + "test", true);
265
266 Assert.assertSame(subkey1, subkey2);
267
268 polytomousKeyService.merge(pkey);
269 }
270
271 @Test
272 public void savePolytomousKeyNodeDataWithSameSubKeyUsingService() {
273
274 PolytomousKey pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
275
276
277 PolytomousKeyNode pkeynode = pkey.getRoot();
278
279 PersistentCollection children = (PersistentCollection) pkeynode.getChildren();
280 PolytomousKeyNode childNode0 = (PolytomousKeyNode)commonService.get(pkeynode.getUuid(), "children", 0);
281 PolytomousKey subkey1 = CdmBase.deproxy(childNode0.getSubkey(),PolytomousKey.class);
282 String subkey1title = subkey1.getTitleCache();
283 subkey1.setTitleCache(subkey1title + "test", true);
284
285 PolytomousKeyNode childNode1 = (PolytomousKeyNode)commonService.get(pkeynode.getUuid(), "children", 1);
286 PolytomousKey subkey2 = CdmBase.deproxy(childNode1.getSubkey(),PolytomousKey.class);
287 String subkey2title = subkey2.getTitleCache();
288 subkey2.setTitleCache(subkey2title + "test", true);
289
290 Assert.assertNotSame(childNode0, childNode1);
291
292 Assert.assertSame(subkey1, subkey2);
293
294 polytomousKeyService.merge(pkey);
295 }
296
297
298
299 @Test
300 public void savePolytomousKeyNodeDataWithSameLanguageInLabel() {
301
302 PolytomousKey pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
303 PolytomousKeyNode pkeynode = pkey.getRoot();
304
305 Map<Language, LanguageString> label1 = pkeynode.getQuestion().getLabel();
306 label1.size();
307
308
309 Map<Language, LanguageString> label2 = pkeynode.getChildAt(0).getStatement().getLabel();
310 label2.size();
311
312
313 polytomousKeyService.merge(pkey);
314 }
315
316 @Test
317 public void deleteSubKeyInPolytomousSubKeyWithoutInitializing() {
318 PolytomousKey pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
319
320
321 PolytomousKeyNode rootNode = pKey.getRoot();
322 PolytomousKeyNode child = rootNode.getChildAt(0);
323 PolytomousKey subKey = child.getSubkey();
324
325 polytomousKeyService.delete(subKey);
326
327 // since subKey was not initialized before the delete, an attempt
328 // to initialize it after will lead to an NPE
329 try {
330 PolytomousKeyNode subKeyRootNode = subKey.getRoot();
331 Assert.fail("A NullPointerException indicating null root node should be thrown here");
332 } catch(NullPointerException npe) {
333
334 }
335 // retrieving subkey shows its null
336 subKey = CdmBase.deproxy(polytomousKeyService.find(subKeyUuid),PolytomousKey.class);
337 Assert.assertNull(subKey);
338
339 pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
340
341
342 rootNode = pKey.getRoot();
343 child = rootNode.getChildAt(0);
344 subKey = child.getSubkey();
345 // subkey will not be null, because the delete functionality of the subkey
346 // does not currently delete it from a polytomous key node
347 Assert.assertNotNull(subKey);
348 // after reloading the object graph, accessing subKey should throw a null pointer exception
349 try {
350 PolytomousKeyNode subKeyRootNode = subKey.getRoot();
351 Assert.fail("A NullPointerException indicating null root node should be thrown here");
352 } catch(NullPointerException npe) {
353
354 }
355
356 }
357
358
359 @Test
360 public void deleteSubKeyInPolytomousNode() {
361 PolytomousKey pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
362
363
364 PolytomousKeyNode rootNode = pKey.getRoot();
365 List<PolytomousKeyNode> children = rootNode.getChildren();
366 PolytomousKeyNode child = rootNode.getChildAt(0);
367 polytomousKeyNodeService.delete(child.getUuid(), true);
368
369 pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
370
371 rootNode = pKey.getRoot();
372 children = rootNode.getChildren();
373 Assert.assertFalse(children.contains(child));
374 }
375
376 @Test
377 public void deleteSubKeyInPolytomousSubKeyAfterInitializing() {
378 PolytomousKey pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
379
380
381 PolytomousKeyNode rootNode = pKey.getRoot();
382 PolytomousKeyNode child = rootNode.getChildAt(0);
383 PolytomousKey subKey = child.getSubkey();
384 // this call initializes the subkey
385 subKey.getRoot();
386
387 polytomousKeyService.delete(subKey);
388
389 // since subKey was initialized before the delete, it will be
390 // accesible even after the delete. This behaviour is similar
391 // to hibernate session delete where the deleted object is
392 // made transient, but not deleted from the object graph
393
394 PolytomousKeyNode subKeyRootNode = subKey.getRoot();
395 Assert.assertNotNull(subKey);
396 }
397
398 @Test
399 public void saveNewTermVocabulary() {
400 TermVocabulary termVocabulary =
401 TermVocabulary.NewInstance(TermType.Feature,
402 null,
403 "Untitled",
404 null,
405 null);
406 try {
407 List<TermVocabulary<DefinedTermBase>> vocabularies = vocabularyService.findByTermType(TermType.Feature);
408
409 for(TermVocabulary vocab : vocabularies) {
410 vocab.getTermsOrderedByLabels(Language.ENGLISH());
411 }
412
413 termVocabulary = vocabularyService.merge(termVocabulary);
414 vocabularies.add(termVocabulary);
415 termVocabulary.setLabel("Test");
416 vocabularyService.merge(new ArrayList<TermVocabulary>(vocabularies));
417 } finally {
418 vocabularyService.delete(termVocabulary);
419 }
420 }
421
422 @Ignore // should be enabled once resolution of #5066 is merged into cdmlib main branch
423 @Test
424 public void saveNewTerm() {
425 UUID vocNameFeatureUuid = UUID.fromString("fa7ca3eef-4092-49e1-beec-ed5096193e5e");
426 UUID vocFeatureUuid = UUID.fromString("b187d555-f06f-4d65-9e53-da7c93f8eaa8");
427 DefinedTermBase newTerm = TermType.Feature.getEmptyDefinedTermBase();
428 newTerm.setLabel("CreateTest");
429
430 try {
431
432 Assert.assertNotNull(newTerm);
433 TermVocabulary vocNameFeature = vocabularyService.find(vocNameFeatureUuid);
434 TermVocabulary vocFeature = vocabularyService.find(vocFeatureUuid);
435
436 List<TermVocabulary> vocs = new ArrayList<TermVocabulary>();
437
438 vocs.add(vocNameFeature);
439 vocs.add(vocFeature);
440
441 vocNameFeature.addTerm(newTerm);
442
443 vocs = vocabularyService.merge(vocs);
444 for(TermVocabulary voc : vocs) {
445 if(voc.getUuid().equals(vocNameFeatureUuid)) {
446 vocNameFeature = voc;
447 }
448 }
449
450 Assert.assertTrue(vocNameFeature.getTerms().contains(newTerm));
451
452 for(Object obj : vocNameFeature.getTerms()) {
453 DefinedTermBase dtb = (DefinedTermBase)obj;
454 if("CreateTest".equals(dtb.getLabel())) {
455 newTerm = dtb;
456 Assert.assertNotNull(dtb.getCreatedBy());
457 Assert.assertNotNull(dtb.getCreated());
458 } else {
459 Assert.assertNull(dtb.getCreatedBy());
460 }
461 }
462 newTerm.setLabel("UpdateTest");
463 newTerm = termService.merge(newTerm);
464 Assert.assertNotNull(newTerm.getUpdatedBy());
465 Assert.assertNotNull(newTerm.getUpdated());
466
467 Assert.assertNull(vocNameFeature.getCreatedBy());
468 Assert.assertNull(vocFeature.getCreatedBy());
469 } finally {
470 if(termService.find(newTerm.getUuid()) != null) {
471 termService.delete(newTerm.getUuid());
472 }
473 }
474 }
475
476 @Ignore // activate after fixing #5138
477 @Test
478 public void updatePerson() {
479 Person person = (Person) CdmApplicationState.getCurrentAppConfig().getAgentService().load(personUuid);
480 // Note : at this point the contact field in Person (AgentBase) is initialized even though no
481 // data related to the Contact class exists in the database.
482 person.setFirstname("Me");
483 CdmApplicationState.getCurrentAppConfig().getAgentService().merge(person);
484
485 }
486
487 @Ignore // activate after fixing #5138
488 @Test
489 public void createPerson() {
490
491 Person person = Person.NewInstance();
492 //person.setTitleCache("New Person", true);
493 person = (Person) CdmApplicationState.getCurrentAppConfig().getAgentService().merge(person);
494 //Note : at this point the contact field in Person (AgentBase) is set to null which is
495 // different behaviour as compared to a load call on an existing Person entity.
496 // The fact that the contact is null will lead to the all-delete-orphan error.
497 person = (Person) CdmApplicationState.getCurrentAppConfig().getAgentService().load(person.getUuid());
498 person.setFirstname("Some");
499 CdmApplicationState.getCurrentAppConfig().getAgentService().merge(person);
500 }
501 }